Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7078391 .. 7079608

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1089400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCTTTCTAAGAGAGTTTGTATGTATATAGAAGGTTGTCCTCCGTTTAAGCTATATATAGTTTCGTATTATACTATTTCGGTCCTTTTGGACAGGATGCTAGCTCCACAGTTTTTGCTTTCTGTCCCATCTCTCATTAGTTTATTATGTACACTTATGAAGGTTTACATATATAACAGGCACTCGATGGGTTATCAGAAGGCGATGGCAATTTTGCAATGGATTGCGCTCATTCTGTCGTTTCTAGCAGCGATTCAAGGTGTTGTGGATGGTTATTCGGTTGACATTGGTGTTAACTATGGATTGTTAGGGGATGACCTGCCTAAACCTAGAGAAGTGGTTAACCTCTTCAAAGCGTATGGTATTGGCAAGGTAAGGCTGTTCAATCCTGATCCAGATGTACTCTGGGCACTGAGGGGGCAAGACATCGATGTCATGGTAGGCGTTCCTAATGAAAACTTAAACGCTTTGGCAGAAAACCAAGGTGCTGTGAACAACTGGTTTGATAACAATATAGAGCCCTACCTAAATGACGTTAACATCTACTTCATCACCGTTGGCAACGAGGTTATTCCCGGTCCCTTAGGAAACTCCGTTTGGCAAGTAATGCAGTATCTACAAAACATCCTCGACGAAAGGAGCTACCGTGGTATTAAAATCTCCACTGTTTTACCAGGGACTGCCTTAAAAACTTCATTTCCACCTTCAAAGGGTGAATTCAACGGAGAGTCGAGCGGTGTCATGACTTCCATTTGTGGGTTTTTACTTTTTCGAGGATCGCCACTTTTGATCAATGTGTATCCTTACTTTGCCTATGCATCAAACCCTACCAAAATTCCCTTGCAATATGCTCTATTTAATTCATCAACACCCGTACAAGACGGGAACTTGAGCTATTACAACCTGTTTGATGCCACCGTTGATGCTTTTATCTCAGCAATGGAGAGAGTCGGGGGAGCTGGTGTCGAGGTGGCGGTAACGGAGAGTGGCTGGCCTTCTGCCGGGAACGGAATTTTCACTAGTCCGGAGCTTGCTGGTACATATAACCGGAATTTCATGAAACACGTAACCTCCCTGAAAGGGACACCTAAACGACCTGGTCATTACATCGAAGGCTTTATCTTTGCCCTGTTCAACGAGAATCAGAAACCCGCTGGTGTGGAGCAAAACTTCGGACTGTTTTATCCTACCATGAAACCTGTTTACACTGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

406

Amino Acids

44.9

Weight (kDa)

5.72

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	96 - 404	1.6e-82	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	735
AccIII	TCCGGA	1 cut(s)	1024
AciI	CCGC	3 cut(s)	735, 974, 1152
AclWI	GGATC	2 cut(s)	386, 784
AcsI	RAATTY	4 cut(s)	716, 834, 1011, 1051
AfaI	GTAC	4 cut(s)	151, 402, 876, 1039
AfiI	CCNNNNNNNGG	4 cut(s)	710, 756, 1001, 1080
AflIII	ACRYGT	1 cut(s)	1063
AgsI	TTSAA	6 cut(s)	257, 352, 385, 708, 721, 1135
AhlI	ACTAGT	1 cut(s)	1019
AjnI	CCWGG	2 cut(s)	673, 1096
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	6 cut(s)	52, 104, 642, 894, 959, 1030
AluI	AGCT	6 cut(s)	52, 104, 642, 894, 959, 1030
AlwI	GGATC	2 cut(s)	386, 784
AlwNI	CAGNNNCTG	1 cut(s)	680
Aor13HI	TCCGGA	1 cut(s)	1024
AoxI	GGCC	1 cut(s)	992
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	4 cut(s)	716, 834, 1011, 1051
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	82, 578
AsuC2I	CCSGG	2 cut(s)	576, 1003
AsuHPI	GGTGA	2 cut(s)	544, 725
AsuNHI	GCTAGC	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	82, 578
AxyI	CCTNAGG	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	4 cut(s)	136, 181, 199, 263
BciT130I	CCWGG	2 cut(s)	675, 1098
BciVI	GTATCC	1 cut(s)	810
BclI	TGATCA	1 cut(s)	789
BcnI	CCSGG	2 cut(s)	576, 1003
BcuI	ACTAGT	1 cut(s)	1019
BfaI	CTAG	4 cut(s)	101, 245, 330, 1020
BfuAI	ACCTGC	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	810
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	4 cut(s)	576, 675, 1003, 1098
Bme18I	GGWCC	2 cut(s)	82, 578
BmgT120I	GGNCC	2 cut(s)	82, 578
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	4 cut(s)	576, 675, 1003, 1098
BmsI	GCATC	4 cut(s)	87, 827, 901, 913
BmtI	GCTAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	910
BpuMI	CCSGG	2 cut(s)	576, 1003
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	1066
BsaJI	CCNNGG	3 cut(s)	481, 646, 674
BsaWI	WCCGGW	2 cut(s)	1024, 1047
BsaXI	ACNNNNNCTCC	6 cut(s)	631, 661, 948, 978, 1055, 1085
Bsc4I	CCNNNNNNNGG	4 cut(s)	710, 756, 1001, 1080
Bse1I	ACTGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	583
Bse3DI	GCAATG	2 cut(s)	224, 945
BseAI	TCCGGA	1 cut(s)	1024
BseBI	CCWGG	2 cut(s)	675, 1098
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	481, 646, 674
BseGI	GGATG	4 cut(s)	102, 274, 319, 624
BseLI	CCNNNNNNNGG	4 cut(s)	710, 756, 1001, 1080
BseMI	GCAATG	2 cut(s)	224, 945
BseMII	CTCAG	2 cut(s)	404, 948
BseNI	ACTGG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	994
BshVI	ATCGAT	1 cut(s)	429
BsiSI	CCGG	4 cut(s)	576, 1002, 1025, 1048
BslFI	GGGAC	4 cut(s)	110, 564, 691, 1096
BslI	CCNNNNNNNGG	4 cut(s)	710, 756, 1001, 1080
BsmFI	GGGAC	4 cut(s)	110, 564, 691, 1096
BsnI	GGCC	1 cut(s)	994
Bsp1286I	GDGCHC	2 cut(s)	412, 522
Bsp13I	TCCGGA	1 cut(s)	1024
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	391, 776, 789
BspACI	CCGC	3 cut(s)	735, 974, 1152
BspANI	GGCC	1 cut(s)	994
BspCNI	CTCAG	2 cut(s)	405, 947
BspDI	ATCGAT	1 cut(s)	429
BspEI	TCCGGA	1 cut(s)	1024
BspHI	TCATGA	2 cut(s)	741, 1056
BspLI	GGNNCC	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	327
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	386, 784
BsrBI	CCGCTC	1 cut(s)	735
BsrDI	GCAATG	2 cut(s)	224, 945
BsrGI	TGTACA	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	481, 646, 674
BssMI	GATC	3 cut(s)	391, 776, 789
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	675, 1098
Bst4CI	ACNGT	7 cut(s)	111, 556, 647, 667, 919, 1179, 1210
Bst6I	CTCTTC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstAUI	TGTACA	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	1066
BstC8I	GCNNGC	3 cut(s)	102, 992, 1032
BstDEI	CTNAG	4 cut(s)	9, 413, 583, 934
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	4 cut(s)	102, 274, 319, 624
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	3 cut(s)	394, 779, 792
BstMBI	GATC	3 cut(s)	391, 776, 789
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstNI	CCWGG	2 cut(s)	675, 1098
BstSCI	CCNGG	4 cut(s)	574, 673, 1001, 1096
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	429
Bsu36I	CCTNAGG	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	810
BsuRI	GGCC	1 cut(s)	994
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	646
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	4 cut(s)	102, 274, 319, 624
BtsIMutI	CAGTG	3 cut(s)	410, 663, 1206
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	102, 992, 1032
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	2 cut(s)	741, 1056
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	82, 578
ClaI	ATCGAT	1 cut(s)	429
CsiI	ACCWGGT	1 cut(s)	1096
Csp6I	GTAC	4 cut(s)	150, 401, 875, 1038
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviAII	CATG	4 cut(s)	436, 742, 1057, 1192
CviQI	GTAC	4 cut(s)	150, 401, 875, 1038
DdeI	CTNAG	4 cut(s)	9, 413, 583, 934
DpnI	GATC	3 cut(s)	393, 778, 791
DpnII	GATC	3 cut(s)	391, 776, 789
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	82, 578
Eco81I	CCTNAGG	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	673, 1096
EcoT14I	CCWWGG	1 cut(s)	481
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	4 cut(s)	439, 745, 1060, 1195
FaqI	GGGAC	4 cut(s)	110, 564, 691, 1096
FatI	CATG	4 cut(s)	435, 741, 1056, 1191
FauI	CCCGC	1 cut(s)	1159
FbaI	TGATCA	1 cut(s)	789
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	4 cut(s)	109, 281, 326, 611
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	4 cut(s)	101, 245, 330, 1020
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	994
HapII	CCGG	4 cut(s)	576, 1002, 1025, 1048
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	439, 745, 1060, 1195
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	4 cut(s)	283, 295, 343, 538
HindII	GTYRAC	4 cut(s)	283, 295, 343, 538
HinfI	GANTC	4 cut(s)	253, 728, 948, 1141
HpaI	GTTAAC	3 cut(s)	295, 343, 538
HpaII	CCGG	4 cut(s)	576, 1002, 1025, 1048
HphI	GGTGA	2 cut(s)	544, 725
Hpy166II	GTNNAC	8 cut(s)	152, 166, 283, 295, 343, 493, 538, 1204
Hpy188I	TCNGA	3 cut(s)	198, 1146, 1175
Hpy188III	TCNNGA	5 cut(s)	389, 395, 742, 1025, 1057
Hpy8I	GTNNAC	8 cut(s)	152, 166, 283, 295, 343, 493, 538, 1204
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	6 cut(s)	26, 154, 193, 714, 1005, 1106
HpyCH4III	ACNGT	7 cut(s)	111, 556, 647, 667, 919, 1179, 1210
HpyCH4IV	ACGT	2 cut(s)	534, 1065
HpyCH4V	TGCA	4 cut(s)	217, 610, 818, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	4 cut(s)	9, 413, 583, 934
HpySE526I	ACGT	2 cut(s)	534, 1065
Hsp92II	CATG	4 cut(s)	439, 745, 1060, 1195
HspAI	GCGC	1 cut(s)	227
Kpn2I	TCCGGA	1 cut(s)	1024
Ksp22I	TGATCA	1 cut(s)	789
KspAI	GTTAAC	3 cut(s)	295, 343, 538
Kzo9I	GATC	3 cut(s)	391, 776, 789
LmnI	GCTCC	5 cut(s)	109, 639, 956, 1027, 1162
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	4 cut(s)	87, 827, 901, 913
MabI	ACCWGGT	1 cut(s)	1096
MaeI	CTAG	4 cut(s)	101, 245, 330, 1020
MaeII	ACGT	2 cut(s)	534, 1065
MaeIII	GTNAC	2 cut(s)	976, 1066
MalI	GATC	3 cut(s)	393, 778, 791
MbiI	CCGCTC	1 cut(s)	735
MboI	GATC	3 cut(s)	391, 776, 789
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	412, 522
MluCI	AATT	6 cut(s)	210, 716, 834, 859, 1011, 1051
MlyI	GAGTC	2 cut(s)	737, 957
MnlI	CCTC	8 cut(s)	51, 356, 408, 559, 638, 767, 961, 1081
Mph1103I	ATGCAT	1 cut(s)	820
MroI	TCCGGA	1 cut(s)	1024
MseI	TTAA	9 cut(s)	48, 294, 342, 461, 537, 654, 686, 858, 1216
MspA1I	CMGCKG	1 cut(s)	1154
MspI	CCGG	4 cut(s)	576, 1002, 1025, 1048
MspR9I	CCNGG	4 cut(s)	576, 675, 1003, 1098
MvaI	CCWGG	2 cut(s)	675, 1098
MwoI	GCNNNNNNNGC	1 cut(s)	607
NciI	CCSGG	2 cut(s)	576, 1003
NdeII	GATC	3 cut(s)	391, 776, 789
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	439, 745, 1060, 1195
NlaIV	GGNNCC	1 cut(s)	580
NsiI	ATGCAT	1 cut(s)	820
PagI	TCATGA	2 cut(s)	741, 1056
PfeI	GAWTC	2 cut(s)	253, 1141
PflFI	GACNNNGTC	1 cut(s)	1098
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	736, 956
PpsI	GAGTC	2 cut(s)	736, 956
Ppu21I	YACGTR	1 cut(s)	1066
Psp6I	CCWGG	2 cut(s)	673, 1096
PspGI	CCWGG	2 cut(s)	673, 1096
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	82, 578
PstNI	CAGNNNCTG	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	1098
RsaI	GTAC	4 cut(s)	151, 402, 876, 1039
RsaNI	GTAC	4 cut(s)	150, 401, 875, 1038
SaqAI	TTAA	9 cut(s)	48, 294, 342, 461, 537, 654, 686, 858, 1216
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	391, 776, 789
Sau96I	GGNCC	2 cut(s)	82, 578
SchI	GAGTC	2 cut(s)	737, 957
ScrFI	CCNGG	4 cut(s)	576, 675, 1003, 1098
SduI	GDGCHC	2 cut(s)	412, 522
SexAI	ACCWGGT	1 cut(s)	1096
SfaNI	GCATC	4 cut(s)	87, 827, 901, 913
SinI	GGWCC	2 cut(s)	82, 578
SmlI	CTYRAG	1 cut(s)	889
SmoI	CTYRAG	1 cut(s)	889
SpeI	ACTAGT	1 cut(s)	1019
Sse9I	AATT	6 cut(s)	210, 716, 834, 859, 1011, 1051
SsiI	CCGC	3 cut(s)	735, 974, 1152
SspMI	CTAG	4 cut(s)	101, 245, 330, 1020
StyD4I	CCNGG	4 cut(s)	574, 673, 1001, 1096
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	7 cut(s)	111, 556, 647, 667, 919, 1179, 1210
TaiI	ACGT	2 cut(s)	537, 1068
TaqI	TCGA	7 cut(s)	185, 429, 630, 731, 772, 966, 1110
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	6 cut(s)	210, 716, 834, 859, 1011, 1051
TatI	WGTACW	2 cut(s)	149, 400
TfiI	GAWTC	2 cut(s)	253, 1141
Tru1I	TTAA	9 cut(s)	48, 294, 342, 461, 537, 654, 686, 858, 1216
Tru9I	TTAA	9 cut(s)	48, 294, 342, 461, 537, 654, 686, 858, 1216
TscAI	CASTG	3 cut(s)	417, 670, 1213
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	8 cut(s)	173, 468, 538, 684, 852, 1045, 1073, 1208
TspGWI	ACGGA	5 cut(s)	33, 583, 738, 995, 1023
TspRI	CASTG	3 cut(s)	417, 670, 1213
Tth111I	GACNNNGTC	1 cut(s)	1098
VpaK11BI	GGWCC	2 cut(s)	82, 578
XapI	RAATTY	4 cut(s)	716, 834, 1011, 1051
XcmI	CCANNNNNNNNNTGG	1 cut(s)	402
XspI	CTAG	4 cut(s)	101, 245, 330, 1020
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.