Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

84933475 .. 84934497

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAGTACTCGATTGGATTGCACTCATTCTGTGTGTTTTAGCAAGCTTTGACAACCATGTAGGCCGTGTGGGAGCTTTAGACATAGGTGTTTGCTATGGGACGCAGGGAAATGACCTTCCTGCAGCAACAGATGTTATCAATCTCTACAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACCTAACCATGCAGCGCTCGATGCCCTGAAAGGGAGTGGAATCGGTGTCACGATAGGCATTCCGAACGATGAGTTGGCGCATTTGGCAACAGGCCAAGCTGCTGTGGACATATGGTTCAACGACAATGTAGCTCCTTATATAAATGACGGTAACATCAATTACATCGCCGTCGGTAACGAGCCCGACCTTCCCGGGTCAGTAGGCATCAATAATATCTTGCCGGTAATGAAGTTGTTTCACAACATAGTTAGTGACAAAGGGATTAAGGTGACCACAGTTGTGTCAACATTTATCCTAGGATCTTCATACCCACCTTCGAGTGGTGCATTCACATCAGAGGCTAGTAGTGTAATGTCCGGCATTCTTGAGTTTTTAGCATCAACCGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAAACCCTGGCAGTATTCGCTTAGACTATGCTCAATTCACTGCAACAGACGTGGTGGTGCAAGACGGAGCATACAGCTACCACAATTTGTTTGATGCCATGGTCGATTCTTTCGTAGCAGCGATGGAGAAAGCAGGCGGCGGAAATGTCAAAGTTGCGGTGGCTGAAAGTGGTTGGCCTTCTGATGGCAGCGGAAATATCAGCACTCCACAACTCGCAGCCACATATAACAAGAATTTCATGAATCATATCCTTAAAAAGGAAGGGACGCCAAGAAGACCTGGTGAAAACATTGAAGGGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAATGGGGAGGACGAAAAACACTATGGTCTTTTTTATCCCAACATGCAACCTGTTTATGATGTATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

340

Amino Acids

36.57

Weight (kDa)

4.85

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 338	5.6e-91	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	753, 756, 773, 807
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	850
AcyI	GRCGYC	1 cut(s)	884
AfaI	GTAC	1 cut(s)	9
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	216, 506, 800, 874
AgsI	TTSAA	3 cut(s)	304, 911, 934
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	2 cut(s)	622, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AleI	CACNNNNGTG	1 cut(s)	464
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	5 cut(s)	48, 77, 284, 317, 693
AluI	AGCT	5 cut(s)	48, 77, 284, 317, 693
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	377
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	3 cut(s)	64, 277, 791
ApeKI	GCWGC	6 cut(s)	125, 197, 284, 734, 804, 833
ApoI	RAATTY	1 cut(s)	850
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	202, 265
AsuC2I	CCSGG	2 cut(s)	378, 379
AsuHPI	GGTGA	2 cut(s)	466, 911
AsuII	TTCGAA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	898
BbvI	GCAGC	6 cut(s)	137, 209, 271, 746, 816, 845
BccI	CCATC	2 cut(s)	733, 794
BceAI	ACGGC	3 cut(s)	51, 175, 338
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	624, 897
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	378, 379
BfaI	CTAG	2 cut(s)	482, 528
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	7 cut(s)	126, 198, 285, 735, 754, 805, 834
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	7 cut(s)	127, 199, 286, 736, 755, 806, 835
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	4 cut(s)	378, 379, 624, 897
BmeT110I	CYCGRG	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	667
BmrFI	CCNGG	4 cut(s)	378, 379, 624, 897
BmsI	GCATC	4 cut(s)	196, 399, 572, 700
BpiI	GAAGAC	1 cut(s)	898
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	378, 379
BsaHI	GRCGYC	1 cut(s)	884
BsaJI	CCNNGG	4 cut(s)	377, 481, 622, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 506, 800, 874
Bse118I	RCCGGY	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	624, 897
BseDI	CCNNGG	4 cut(s)	377, 481, 622, 714
BseLI	CCNNNNNNNGG	4 cut(s)	216, 506, 800, 874
BseMI	GCAATG	1 cut(s)	162
BseXI	GCAGC	6 cut(s)	137, 209, 271, 746, 816, 845
BshFI	GGCC	3 cut(s)	66, 279, 793
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	378, 407, 543
BslFI	GGGAC	2 cut(s)	115, 895
BslI	CCNNNNNNNGG	4 cut(s)	216, 506, 800, 874
BsmFI	GGGAC	2 cut(s)	115, 895
BsmI	GAATGC	3 cut(s)	243, 512, 546
BsnI	GGCC	3 cut(s)	66, 279, 793
BsoBI	CYCGRG	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	485, 585
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	4 cut(s)	753, 756, 773, 807
BspANI	GGCC	3 cut(s)	66, 279, 793
BspHI	TCATGA	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	4 cut(s)	377, 481, 622, 714
BssMI	GATC	2 cut(s)	485, 585
BssNI	GRCGYC	1 cut(s)	884
BssT1I	CCWWGG	2 cut(s)	481, 714
Bst2UI	CCWGG	2 cut(s)	624, 897
Bst4CI	ACNGT	2 cut(s)	335, 463
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	884
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	46, 751
BstDEI	CTNAG	1 cut(s)	637
BstDSI	CCRYGG	1 cut(s)	714
BstEII	GGTNACC	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 265
BstKTI	GATC	2 cut(s)	488, 588
BstMBI	GATC	2 cut(s)	485, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 269, 633
BstNI	CCWGG	2 cut(s)	624, 897
BstNSI	RCATGY	1 cut(s)	997
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	4 cut(s)	376, 377, 622, 895
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	6 cut(s)	137, 209, 271, 746, 816, 845
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	66, 279, 793
BtgI	CCRYGG	1 cut(s)	714
BtgZI	GCGATG	2 cut(s)	334, 752
BtrI	CACGTC	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	46, 751
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	2 cut(s)	202, 265
Cfr10I	RCCGGY	1 cut(s)	406
Cfr9I	CCCGGG	1 cut(s)	377
CseI	GACGC	2 cut(s)	112, 892
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	6 cut(s)	59, 194, 715, 856, 928, 994
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	637
DpnI	GATC	2 cut(s)	487, 587
DpnII	GATC	2 cut(s)	485, 585
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	771
Eco130I	CCWWGG	2 cut(s)	481, 714
Eco24I	GRGCYC	1 cut(s)	369
Eco47III	AGCGCT	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoO65I	GGTNACC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	622, 895
EcoT14I	CCWWGG	2 cut(s)	481, 714
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	481, 714
FaeI	CATG	6 cut(s)	62, 197, 718, 859, 931, 997
FaqI	GGGAC	2 cut(s)	115, 895
FatI	CATG	6 cut(s)	58, 193, 714, 855, 927, 993
FauNDI	CATATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	7 cut(s)	126, 198, 285, 735, 754, 805, 834
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	7 cut(s)	126, 198, 285, 735, 754, 805, 834
FspBI	CTAG	2 cut(s)	482, 528
GlaI	GCGC	2 cut(s)	201, 264
GluI	GCNGC	7 cut(s)	126, 198, 285, 735, 754, 805, 834
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	66, 279, 793
HapII	CCGG	3 cut(s)	378, 407, 543
HgaI	GACGC	2 cut(s)	112, 892
HhaI	GCGC	2 cut(s)	202, 265
Hin1I	GRCGYC	1 cut(s)	884
Hin1II	CATG	6 cut(s)	62, 197, 718, 859, 931, 997
Hin6I	GCGC	2 cut(s)	200, 263
HinP1I	GCGC	2 cut(s)	200, 263
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	4 cut(s)	225, 572, 722, 859
HpaII	CCGG	3 cut(s)	378, 407, 543
HphI	GGTGA	2 cut(s)	466, 911
Hpy166II	GTNNAC	2 cut(s)	292, 471
Hpy188I	TCNGA	3 cut(s)	249, 523, 799
Hpy188III	TCNNGA	3 cut(s)	235, 551, 856
Hpy8I	GTNNAC	2 cut(s)	292, 471
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	6 cut(s)	128, 383, 510, 804, 872, 905
HpyCH4III	ACNGT	2 cut(s)	335, 463
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	8 cut(s)	23, 125, 167, 197, 512, 659, 676, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 269, 633
HpyF3I	CTNAG	1 cut(s)	637
HpySE526I	ACGT	1 cut(s)	666
Hsp92I	GRCGYC	1 cut(s)	884
Hsp92II	CATG	6 cut(s)	62, 197, 718, 859, 931, 997
HspAI	GCGC	2 cut(s)	200, 263
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	485, 585
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	74, 322, 683
Lsp1109I	GCAGC	6 cut(s)	137, 209, 271, 746, 816, 845
LweI	GCATC	4 cut(s)	196, 399, 572, 700
MabI	ACCWGGT	1 cut(s)	895
MaeI	CTAG	2 cut(s)	482, 528
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	5 cut(s)	232, 335, 359, 437, 454
MalI	GATC	2 cut(s)	487, 587
MboI	GATC	2 cut(s)	485, 585
MboII	GAAGA	3 cut(s)	172, 480, 903
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	5 cut(s)	171, 343, 650, 700, 850
MnlI	CCTC	2 cut(s)	517, 952
MseI	TTAA	2 cut(s)	450, 870
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	807
MspI	CCGG	3 cut(s)	378, 407, 543
MspR9I	CCNGG	4 cut(s)	378, 379, 624, 897
Mva1269I	GAATGC	3 cut(s)	243, 512, 546
MvaI	CCWGG	2 cut(s)	624, 897
MwoI	GCNNNNNNNGC	3 cut(s)	206, 269, 633
NciI	CCSGG	2 cut(s)	378, 379
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	2 cut(s)	485, 585
NlaIII	CATG	6 cut(s)	62, 197, 718, 859, 931, 997
NmuCI	GTSAC	3 cut(s)	232, 437, 454
NspI	RCATGY	1 cut(s)	997
NspV	TTCGAA	1 cut(s)	183
OliI	CACNNNNGTG	1 cut(s)	464
PagI	TCATGA	1 cut(s)	855
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PctI	GAATGC	3 cut(s)	243, 512, 546
PfeI	GAWTC	4 cut(s)	225, 572, 722, 859
PkrI	GCNGC	7 cut(s)	127, 199, 286, 736, 755, 806, 835
Psp6I	CCWGG	2 cut(s)	622, 895
PspEI	GGTNACC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	622, 895
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	450, 870
SatI	GCNGC	7 cut(s)	126, 198, 285, 735, 754, 805, 834
Sau3AI	GATC	2 cut(s)	485, 585
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	4 cut(s)	378, 379, 624, 897
SduI	GDGCHC	1 cut(s)	369
SexAI	ACCWGGT	1 cut(s)	895
SfaNI	GCATC	4 cut(s)	196, 399, 572, 700
SfcI	CTRYAG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	5 cut(s)	171, 343, 650, 700, 850
SsiI	CCGC	4 cut(s)	753, 756, 773, 807
SspMI	CTAG	2 cut(s)	482, 528
StyD4I	CCNGG	4 cut(s)	376, 377, 622, 895
StyI	CCWWGG	2 cut(s)	481, 714
TaaI	ACNGT	2 cut(s)	335, 463
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	5 cut(s)	12, 183, 204, 503, 720
TasI	AATT	5 cut(s)	171, 343, 650, 700, 850
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	756
TfiI	GAWTC	4 cut(s)	225, 572, 722, 859
Tru1I	TTAA	2 cut(s)	450, 870
Tru9I	TTAA	2 cut(s)	450, 870
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	3 cut(s)	232, 437, 454
TseI	GCWGC	6 cut(s)	125, 197, 284, 734, 804, 833
Tsp45I	GTSAC	3 cut(s)	232, 437, 454
TspDTI	ATGAA	4 cut(s)	428, 480, 844, 872
TspGWI	ACGGA	1 cut(s)	696
TspMI	CCCGGG	1 cut(s)	377
TspRI	CASTG	1 cut(s)	661
XagI	CCTNNNNNAGG	1 cut(s)	872
XapI	RAATTY	1 cut(s)	850
XceI	RCATGY	1 cut(s)	997
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XmaI	CCCGGG	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	2 cut(s)	482, 528
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.