Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7057564 .. 7058640

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1089200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCAGGTTTTATATTATAAGGCACTCAGTAGTGATCAGAAAGTGATGGCAGTTTCGCAATGGATTGCGTTCATTCTATCATTCCTAGCAACCATTTACAACCACAACATAGAAATTGTGGAAGCTAAGATGACATTTGACATCGGTGTTAACTATGGGACGTTGGGGGATAACCTCCCTTCTCACGAAGACGTGGTTCAGCTCTTCAAAGACAACCATATTAACAAGATGAGGCTGTTCAATCCTAATCCGGAGGTACTCAAAGCGCTGATGGGGCAAGGAATCTCCATAGTGCTAGGCATTCCTAACGAAGACTTAGCCAGTTTGTCAGAAAGTCAAGAAGCTGTGGATCAATGGTTTGCTGTCAATGTACAGCCCTACATAGATGACATTGAATTCAACTACATTGCCGTTGGAAACGAGGTTATACCCGGGGAATTAGGCAGCTATGTTTGGCAAGTAATGCAGTATCTACAGCACACCATCGACGAATACCACTACCAAAGCCTAAAGGTGACCACTGTTTTGCCAGCTACTGCCTTGGGAGTTTCATATCCACCTTCAGCCGGTCAGTTCAGCGGAGAGGCTGCCGGTATCATGGCTTCCATTTGTCCCTTTTTGAATTATCAAGGGTCGCCCCTTATGATCAACGTGTATCCTTACTTTGCCTATGCGTCAAAAGCTTCCGATATTCCCTTAGACTACGCTCAATTTACGGCAACAAAACCCTGGTTACAAGATGGGAACTTGAGCTATTACAACCTATTTGATGCCACAGTTGATGCTTTTTTCTCAGCAATAGAGAAATCCGGGGGACCCGATGTAGCCGTGGTGGTGTCCGAGAGTGGTTGGCCATCTGCTGGGAACGGAGATTTCACTGATACAGAACTTGCTGGGACGTATGTTAGAAATTTCGTAAGACATATAACCTCGAACGTAGGAACGCCGAAAAGACCCGGTGCTTACATAGAAGGCTTCGTCTTTGCAATGTTTAATGAGAATCAGAAACCCAGCGAAGAGGAGCAAAACTTCGGAATATTTTATCCCAACAAGAAACCTGTGTATCCTGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

359

Amino Acids

39.8

Weight (kDa)

4.5

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	48 - 357	1.5e-87	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	860
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	851
AcsI	RAATTY	2 cut(s)	395, 910
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	2 cut(s)	258, 372
AfeI	AGCGCT	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	566, 860
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	5 cut(s)	208, 241, 395, 400, 622
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	7 cut(s)	125, 202, 344, 447, 533, 683, 753
AluI	AGCT	7 cut(s)	125, 202, 344, 447, 533, 683, 753
AlwI	GGATC	1 cut(s)	357
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	431
Aor13HI	TCCGGA	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	267
AoxI	GGCC	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	444, 587
ApoI	RAATTY	2 cut(s)	395, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	815
AsuC2I	CCSGG	4 cut(s)	432, 433, 811, 957
AsuHPI	GGTGA	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	815
BaeI	ACNNNNGTAYC	1 cut(s)	1046
BalI	TGGCCA	1 cut(s)	853
BarI	GAAGNNNNNNTAC	2 cut(s)	586, 618
BbsI	GAAGAC	2 cut(s)	195, 318
BbvI	GCAGC	2 cut(s)	456, 574
BccI	CCATC	5 cut(s)	40, 265, 491, 734, 862
BceAI	ACGGC	3 cut(s)	395, 732, 812
BciT130I	CCWGG	1 cut(s)	730
BciVI	GTATCC	2 cut(s)	666, 1074
BclI	TGATCA	2 cut(s)	34, 645
BcnI	CCSGG	4 cut(s)	432, 433, 811, 957
BfaI	CTAG	2 cut(s)	86, 296
BfmI	CTRYAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	269
BfuI	GTATCC	2 cut(s)	666, 1074
BisI	GCNGC	2 cut(s)	445, 588
BlsI	GCNGC	2 cut(s)	446, 589
Bme1390I	CCNGG	5 cut(s)	432, 433, 730, 811, 957
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	1 cut(s)	431
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	2 cut(s)	816, 817
BmrFI	CCNGG	5 cut(s)	432, 433, 730, 811, 957
BmsI	GCATC	2 cut(s)	760, 772
BpiI	GAAGAC	2 cut(s)	195, 318
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	4 cut(s)	432, 433, 811, 957
BsaJI	CCNNGG	6 cut(s)	431, 432, 540, 728, 810, 828
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 860
Bse118I	RCCGGY	2 cut(s)	566, 590
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	3 cut(s)	65, 405, 993
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	6 cut(s)	431, 432, 540, 728, 810, 828
BseLI	CCNNNNNNNGG	2 cut(s)	566, 860
BseMI	GCAATG	3 cut(s)	65, 405, 993
BseMII	CTCAG	2 cut(s)	40, 807
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	1034
BseXI	GCAGC	2 cut(s)	456, 574
BseYI	CCCAGC	3 cut(s)	860, 893, 1010
BshFI	GGCC	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	6 cut(s)	251, 432, 567, 591, 810, 957
BslFI	GGGAC	4 cut(s)	172, 597, 828, 910
BslI	CCNNNNNNNGG	2 cut(s)	566, 860
BsmFI	GGGAC	4 cut(s)	172, 597, 828, 910
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	853
BsoBI	CYCGRG	1 cut(s)	431
Bsp13I	TCCGGA	1 cut(s)	250
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	3 cut(s)	34, 349, 645
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	1 cut(s)	853
BspCNI	CTCAG	2 cut(s)	39, 806
BspEI	TCCGGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	816, 817
BspPI	GGATC	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	209
BsrDI	GCAATG	3 cut(s)	65, 405, 993
BsrFI	RCCGGY	2 cut(s)	566, 590
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	2 cut(s)	566, 590
BssECI	CCNNGG	6 cut(s)	431, 432, 540, 728, 810, 828
BssMI	GATC	3 cut(s)	34, 349, 645
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	2 cut(s)	523, 778
Bst6I	CTCTTC	2 cut(s)	209, 1011
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	5 cut(s)	26, 126, 316, 697, 793
BstDSI	CCRYGG	1 cut(s)	828
BstEII	GGTNACC	1 cut(s)	514
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	37, 352, 648
BstMBI	GATC	3 cut(s)	34, 349, 645
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 463, 680
BstNI	CCWGG	1 cut(s)	730
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	5 cut(s)	430, 431, 728, 809, 955
BstSFI	CTRYAG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	456, 574
BstV2I	GAAGAC	2 cut(s)	195, 318
BsuI	GTATCC	2 cut(s)	666, 1074
BsuRI	GGCC	1 cut(s)	853
BtgI	CCRYGG	1 cut(s)	828
BtrI	CACGTC	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	519, 876
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	2 cut(s)	566, 590
Cfr13I	GGNCC	1 cut(s)	815
Cfr9I	CCCGGG	1 cut(s)	431
CseI	GACGC	1 cut(s)	663
Csp6I	GTAC	2 cut(s)	257, 371
CviAII	CATG	1 cut(s)	598
CviQI	GTAC	2 cut(s)	257, 371
DdeI	CTNAG	5 cut(s)	26, 126, 316, 697, 793
DpnI	GATC	3 cut(s)	36, 351, 647
DpnII	GATC	3 cut(s)	34, 349, 645
EaeI	YGGCCR	1 cut(s)	851
Eam1104I	CTCTTC	2 cut(s)	209, 1011
EarI	CTCTTC	2 cut(s)	209, 1011
Eco130I	CCWWGG	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	815
Eco47III	AGCGCT	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	815
EcoO65I	GGTNACC	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	1 cut(s)	601
FaqI	GGGAC	4 cut(s)	172, 597, 828, 910
FatI	CATG	1 cut(s)	597
FbaI	TGATCA	2 cut(s)	34, 645
Fnu4HI	GCNGC	2 cut(s)	445, 588
Fsp4HI	GCNGC	2 cut(s)	445, 588
FspBI	CTAG	2 cut(s)	86, 296
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	2 cut(s)	445, 588
GsaI	CCCAGC	3 cut(s)	864, 897, 1014
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	853
HapII	CCGG	6 cut(s)	251, 432, 567, 591, 810, 957
HgaI	GACGC	1 cut(s)	663
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	1 cut(s)	601
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	2 cut(s)	282, 1000
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	6 cut(s)	251, 432, 567, 591, 810, 957
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	6 cut(s)	39, 331, 688, 841, 1005, 1034
Hpy188III	TCNNGA	3 cut(s)	185, 251, 338
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	3 cut(s)	189, 570, 965
HpyCH4III	ACNGT	2 cut(s)	523, 778
HpyCH4IV	ACGT	5 cut(s)	161, 192, 651, 899, 936
HpyCH4V	TGCA	3 cut(s)	4, 466, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 463, 680
HpyF3I	CTNAG	5 cut(s)	26, 126, 316, 697, 793
HpySE526I	ACGT	5 cut(s)	161, 192, 651, 899, 936
Hsp92II	CATG	1 cut(s)	601
HspAI	GCGC	1 cut(s)	266
KflI	GGGWCCC	1 cut(s)	815
Kpn2I	TCCGGA	1 cut(s)	250
Ksp22I	TGATCA	2 cut(s)	34, 645
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	34, 349, 645
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	1021
Lsp1109I	GCAGC	2 cut(s)	456, 574
LweI	GCATC	2 cut(s)	760, 772
MaeI	CTAG	2 cut(s)	86, 296
MaeII	ACGT	5 cut(s)	161, 192, 651, 899, 936
MaeIII	GTNAC	2 cut(s)	514, 732
MalI	GATC	3 cut(s)	36, 351, 647
MboI	GATC	3 cut(s)	34, 349, 645
MboII	GAAGA	4 cut(s)	196, 200, 323, 1028
MlsI	TGGCCA	1 cut(s)	853
MluCI	AATT	6 cut(s)	114, 395, 437, 622, 710, 910
MluNI	TGGCCA	1 cut(s)	853
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	7 cut(s)	185, 225, 247, 415, 577, 940, 1012
Mox20I	TGGCCA	1 cut(s)	853
MroI	TCCGGA	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	853
MseI	TTAA	4 cut(s)	150, 222, 993, 1075
Msp20I	TGGCCA	1 cut(s)	853
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	6 cut(s)	251, 432, 567, 591, 810, 957
MspR9I	CCNGG	5 cut(s)	432, 433, 730, 811, 957
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	3 cut(s)	274, 463, 680
NciI	CCSGG	4 cut(s)	432, 433, 811, 957
NdeII	GATC	3 cut(s)	34, 349, 645
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	2 cut(s)	816, 817
NmuCI	GTSAC	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	282, 1000
PflMI	CCANNNNNTGG	1 cut(s)	860
PkrI	GCNGC	2 cut(s)	446, 589
PpuMI	RGGWCCY	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	815
Psp6I	CCWGG	1 cut(s)	728
PspEI	GGTNACC	1 cut(s)	514
PspFI	CCCAGC	3 cut(s)	860, 893, 1010
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	2 cut(s)	816, 817
PspPI	GGNCC	1 cut(s)	815
PspPPI	RGGWCCY	1 cut(s)	815
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	2 cut(s)	258, 372
RsaNI	GTAC	2 cut(s)	257, 371
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	4 cut(s)	150, 222, 993, 1075
SatI	GCNGC	2 cut(s)	445, 588
Sau3AI	GATC	3 cut(s)	34, 349, 645
Sau96I	GGNCC	1 cut(s)	815
ScrFI	CCNGG	5 cut(s)	432, 433, 730, 811, 957
SfaNI	GCATC	2 cut(s)	760, 772
SfcI	CTRYAG	1 cut(s)	473
SinI	GGWCC	1 cut(s)	815
SmaI	CCCGGG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	6 cut(s)	114, 395, 437, 622, 710, 910
SsiI	CCGC	1 cut(s)	579
SspI	AATATT	1 cut(s)	1038
SspMI	CTAG	2 cut(s)	86, 296
StyD4I	CCNGG	5 cut(s)	430, 431, 728, 809, 955
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	523, 778
TaiI	ACGT	5 cut(s)	164, 195, 654, 902, 939
TaqI	TCGA	2 cut(s)	486, 932
TasI	AATT	6 cut(s)	114, 395, 437, 622, 710, 910
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	282, 1000
Tru1I	TTAA	4 cut(s)	150, 222, 993, 1075
Tru9I	TTAA	4 cut(s)	150, 222, 993, 1075
TscAI	CASTG	2 cut(s)	526, 883
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	2 cut(s)	444, 587
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	61, 540
TspGWI	ACGGA	1 cut(s)	882
TspMI	CCCGGG	1 cut(s)	431
TspRI	CASTG	2 cut(s)	526, 883
Van91I	CCANNNNNTGG	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	2 cut(s)	395, 910
XmaI	CCCGGG	1 cut(s)	431
XspI	CTAG	2 cut(s)	86, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.