Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7933938 .. 7938251

Gene Structure 4314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG096400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAGGCTCTTCGATCCTAACCAAGCAGCGCTTGAAGCTCTAAGAGGGAGCGGAATTCGTGTCACAATTGGCATTCCGAACGAAGACTTGGCAGATTTAGCAAGAAGCCAGGATGCTGTGAACACATGGTTGAACAACAATATAGCTCCTTATCTACATGACATTATCTTCGACTACATAGCCGTCGGTAACGAGGTCATTCCCGGTTCATTAGGCAACTATGTCTTGCCTGTAATGGATTCGTTACAAAACATCCTTAAAGACAAAGGCAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

92

Amino Acids

10.02

Weight (kDa)

4.43

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 89	8.1e-18	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	54
AfeI	AGCGCT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	35, 133
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	2 cut(s)	38, 146
AluI	AGCT	2 cut(s)	38, 146
AlwI	GGATC	1 cut(s)	8
Aor51HI	AGCGCT	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	54
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	110, 204
BmrFI	CCNGG	2 cut(s)	110, 204
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	118, 252
BseMI	GCAATG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	277
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	118, 252
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 98
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	108, 202
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	118, 252
CfoI	GCGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	126, 158
CviJI	RGCY	6 cut(s)	7, 38, 108, 146, 182, 276
CviKI_1	RGCY	6 cut(s)	7, 38, 108, 146, 182, 276
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco47III	AGCGCT	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	129, 161
FaiI	YATR	5 cut(s)	127, 143, 159, 179, 222
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	2 cut(s)	125, 157
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	125, 239
Fsp4HI	GCNGC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	32
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	129, 161
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	204
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 98
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	129, 161
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	48, 151
LpnPI	CCDG	4 cut(s)	95, 122, 217, 243
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	3 cut(s)	61, 188, 243
MalI	GATC	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	95, 160
MfeI	CAATTG	1 cut(s)	66
MluCI	AATT	2 cut(s)	54, 66
MnlI	CCTC	2 cut(s)	38, 187
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	110, 204
MunI	CAATTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	35, 98
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	129, 161
NmuCI	GTSAC	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	110, 204
SetI	ASST	3 cut(s)	40, 148, 198
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	54, 66
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	108, 202
TaqI	TCGA	2 cut(s)	12, 171
TasI	AATT	2 cut(s)	54, 66
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	198
XapI	RAATTY	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.