Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00129

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

19503 .. 20525

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTGTGCTACAGTGGATTGCATTCATTCTGGGTGTTGTAGCAACCCTTAACAACCATATAGGCCTTGTGGGAGCATCAAAAATAGGCGTTTGCTATGGAATGCTGGGAAGTGACCTCCCTGCAGCAACAGAAGTTGTCAATCTCTACAAACAATACCACATTGGCAAAATGAGGCTCTTCGATCCTAACCAAGCAGCGCTTGAAGCTCTAAGAGGGAGCGGAATTCGTGTCACAGTTGGCATTCCGAACGAAGACTTGGCAGATTTAGCAAGAAGCCAGGATGCTGTGAACACATGGTTCAACAACAATATAGCTCCTTATCTACATGACATTATCTTCGACTACATAGCCGTTGGTAACGAGGTCATTCCCGGTTCATTAGGCAACTATGTCTTGCCTGTAATGGAGTCGTTACAAAACATCCTTAAAGATAAAGGGTATGTGACAAAGGTGACCACAGTTGTGCCATCAACTGCCCTAGGATCTTCATACCCGCCTTCTAGTGGGGAATTCACACAAGAGGCTAGCAGTGTCATGCCCGACATTCTCAAGTTTTTAGCATCAACCCTTTCACCCCTTATGATCAATGTGTATCCTTACTTTGCCCACAAGTCAGACCCTGCCCATGTTCCCTTAGACTACGCTCAGTTCACTTCGGATAAACCAGTGGTTCGAGACGGAAACTTAATGTACTTCTGCCTGTTTGATGCCATTGTGGATGCCTTTTTGGCAGCAATGGCGAAAGCAGGAAACGGGCATGTCAGAGTTGTGGTGTTGGAGAGTGGTTGGCCTTCGGACGGGAACGGAAATTTCACCACTCCAGAGCTTGCAATGACATATAACCAGAACTTCATGTACCATTGCCTTTCCATGGAAGGGACACCAAAAAGACCCGGTGAACCTATTGAAGCGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAAGGGCGAGGAGCAACATTTTGGTCTCTTCTATCCCAACATGGAACCTGTTTATTATATGCCTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

340

Amino Acids

37.39

Weight (kDa)

5.04

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 337	2.4e-89	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AciI	CCGC	2 cut(s)	222, 497
AclWI	GGATC	2 cut(s)	179, 493
AcsI	RAATTY	3 cut(s)	225, 512, 811
AfaI	GTAC	2 cut(s)	695, 860
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	506, 800, 874, 879
AgsI	TTSAA	4 cut(s)	206, 304, 911, 934
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	209, 317, 829
AluI	AGCT	3 cut(s)	209, 317, 829
Alw26I	GTCTC	2 cut(s)	672, 980
AlwI	GGATC	2 cut(s)	179, 493
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	2 cut(s)	64, 791
ApeKI	GCWGC	3 cut(s)	125, 197, 734
ApoI	RAATTY	3 cut(s)	225, 512, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	375, 897
AsuHPI	GGTGA	4 cut(s)	466, 567, 808, 911
AsuNHI	GCTAGC	1 cut(s)	527
AvrII	CCTAGG	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	951
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	137, 209, 746
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	375, 897
BcoDI	GTCTC	2 cut(s)	672, 980
BfaI	CTAG	3 cut(s)	482, 504, 528
BfmI	CTRYAG	2 cut(s)	11, 123
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	606
BglI	GCCNNNNNGGC	1 cut(s)	731
BisI	GCNGC	3 cut(s)	126, 198, 735
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	3 cut(s)	127, 199, 736
Bme1390I	CCNGG	3 cut(s)	281, 375, 897
BmiI	GGNNCC	1 cut(s)	996
BmrFI	CCNGG	3 cut(s)	281, 375, 897
BmsI	GCATC	5 cut(s)	86, 274, 572, 700, 712
BmtI	GCTAGC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	375, 897
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	2 cut(s)	481, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 800, 874, 879
Bse1I	ACTGG	1 cut(s)	668
Bse21I	CCTNAGG	1 cut(s)	951
Bse3DI	GCAATG	3 cut(s)	744, 840, 862
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	481, 873
BseGI	GGATG	3 cut(s)	289, 423, 727
BseLI	CCNNNNNNNGG	4 cut(s)	506, 800, 874, 879
BseMI	GCAATG	3 cut(s)	744, 840, 862
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	668
BseRI	GAGGAG	1 cut(s)	974
BseXI	GCAGC	3 cut(s)	137, 209, 746
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	66, 793
BsiSI	CCGG	2 cut(s)	375, 897
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	4 cut(s)	506, 800, 874, 879
BsmAI	GTCTC	2 cut(s)	672, 980
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	895
BsmI	GAATGC	3 cut(s)	23, 108, 243
BsnI	GGCC	2 cut(s)	66, 793
Bso31I	GGTCTC	1 cut(s)	980
Bsp143I	GATC	3 cut(s)	184, 485, 585
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	2 cut(s)	222, 497
BspANI	GGCC	2 cut(s)	66, 793
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	996
BspMAI	CTGCAG	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	179, 493
BspQI	GCTCTTC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	980
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	3 cut(s)	744, 840, 862
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	481, 873
BssMI	GATC	3 cut(s)	184, 485, 585
BssT1I	CCWWGG	2 cut(s)	481, 873
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	15, 238, 463
Bst6I	CTCTTC	2 cut(s)	185, 983
BstC8I	GCNNGC	2 cut(s)	529, 831
BstDEI	CTNAG	4 cut(s)	212, 637, 648, 951
BstDSI	CCRYGG	1 cut(s)	873
BstEII	GGTNACC	1 cut(s)	454
BstF5I	GGATG	3 cut(s)	289, 423, 727
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	187, 488, 588
BstMAI	GTCTC	2 cut(s)	672, 980
BstMBI	GATC	3 cut(s)	184, 485, 585
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 269, 731, 740
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	764
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	3 cut(s)	279, 373, 895
BstSFI	CTRYAG	2 cut(s)	11, 123
BstV1I	GCAGC	3 cut(s)	137, 209, 746
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu36I	CCTNAGG	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	66, 793
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	3 cut(s)	289, 423, 727
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	20, 538, 675
Cac8I	GCNNGC	2 cut(s)	529, 831
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	694, 859
CviAII	CATG	9 cut(s)	297, 329, 538, 629, 761, 856, 874, 928, 991
CviQI	GTAC	2 cut(s)	694, 859
DdeI	CTNAG	4 cut(s)	212, 637, 648, 951
DpnI	GATC	3 cut(s)	186, 487, 587
DpnII	GATC	3 cut(s)	184, 485, 585
Eam1104I	CTCTTC	2 cut(s)	185, 983
EarI	CTCTTC	2 cut(s)	185, 983
Eco130I	CCWWGG	2 cut(s)	481, 873
Eco147I	AGGCCT	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	980
Eco47III	AGCGCT	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	951
Eco91I	GGTNACC	1 cut(s)	454
EcoO65I	GGTNACC	1 cut(s)	454
EcoRI	GAATTC	2 cut(s)	225, 512
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	481, 873
ErhI	CCWWGG	2 cut(s)	481, 873
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	9 cut(s)	300, 332, 541, 632, 764, 859, 877, 931, 994
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	895
FatI	CATG	9 cut(s)	296, 328, 537, 628, 760, 855, 873, 927, 990
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	3 cut(s)	126, 198, 735
FokI	GGATG	3 cut(s)	296, 410, 734
Fsp4HI	GCNGC	3 cut(s)	126, 198, 735
FspBI	CTAG	3 cut(s)	482, 504, 528
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	3 cut(s)	126, 198, 735
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	807
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	66, 793
HapII	CCGG	2 cut(s)	375, 897
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	9 cut(s)	300, 332, 541, 632, 764, 859, 877, 931, 994
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	2 cut(s)	375, 897
HphI	GGTGA	4 cut(s)	466, 567, 808, 911
Hpy166II	GTNNAC	3 cut(s)	292, 654, 902
Hpy188I	TCNGA	5 cut(s)	249, 619, 661, 767, 799
Hpy188III	TCNNGA	2 cut(s)	677, 824
Hpy8I	GTNNAC	3 cut(s)	292, 654, 902
HpyAV	CCTTC	3 cut(s)	510, 804, 872
HpyCH4III	ACNGT	3 cut(s)	15, 238, 463
HpyCH4V	TGCA	3 cut(s)	23, 125, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 269, 731, 740
HpyF3I	CTNAG	4 cut(s)	212, 637, 648, 951
Hsp92II	CATG	9 cut(s)	300, 332, 541, 632, 764, 859, 877, 931, 994
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	184, 485, 585
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	4 cut(s)	74, 219, 322, 961
Lsp1109I	GCAGC	3 cut(s)	137, 209, 746
LweI	GCATC	5 cut(s)	86, 274, 572, 700, 712
MaeI	CTAG	3 cut(s)	482, 504, 528
MaeIII	GTNAC	6 cut(s)	113, 232, 359, 414, 445, 454
MalI	GATC	3 cut(s)	186, 487, 587
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	3 cut(s)	184, 485, 585
MboII	GAAGA	5 cut(s)	172, 266, 331, 480, 970
MflI	RGATCY	1 cut(s)	485
MluCI	AATT	3 cut(s)	225, 512, 811
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	6 cut(s)	128, 168, 209, 358, 517, 952
MseI	TTAA	3 cut(s)	51, 429, 689
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	2 cut(s)	375, 897
MspR9I	CCNGG	3 cut(s)	281, 375, 897
Mva1269I	GAATGC	3 cut(s)	23, 108, 243
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	206, 269, 731, 740
NciI	CCSGG	2 cut(s)	375, 897
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	3 cut(s)	184, 485, 585
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	9 cut(s)	300, 332, 541, 632, 764, 859, 877, 931, 994
NlaIV	GGNNCC	1 cut(s)	996
NmuCI	GTSAC	4 cut(s)	113, 232, 445, 454
NspI	RCATGY	1 cut(s)	764
OliI	CACNNNNGTG	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	185
PctI	GAATGC	3 cut(s)	23, 108, 243
PkrI	GCNGC	3 cut(s)	127, 199, 736
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	996
PsrI	GAACNNNNNNTAC	2 cut(s)	842, 874
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	2 cut(s)	695, 860
RsaNI	GTAC	2 cut(s)	694, 859
RseI	CAYNNNNRTG	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	51, 429, 689
SatI	GCNGC	3 cut(s)	126, 198, 735
Sau3AI	GATC	3 cut(s)	184, 485, 585
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	281, 375, 897
SetI	ASST	9 cut(s)	120, 211, 319, 369, 456, 831, 907, 952, 1000
SfaNI	GCATC	5 cut(s)	86, 274, 572, 700, 712
SfcI	CTRYAG	2 cut(s)	11, 123
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	3 cut(s)	225, 512, 811
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	222, 497
SspMI	CTAG	3 cut(s)	482, 504, 528
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	279, 373, 895
StyI	CCWWGG	2 cut(s)	481, 873
TaaI	ACNGT	3 cut(s)	15, 238, 463
TaqI	TCGA	3 cut(s)	183, 342, 676
TasI	AATT	3 cut(s)	225, 512, 811
TatI	WGTACW	1 cut(s)	693
Tru1I	TTAA	3 cut(s)	51, 429, 689
Tru9I	TTAA	3 cut(s)	51, 429, 689
TscAI	CASTG	3 cut(s)	20, 538, 675
TseFI	GTSAC	4 cut(s)	113, 232, 445, 454
TseI	GCWGC	3 cut(s)	125, 197, 734
Tsp45I	GTSAC	4 cut(s)	113, 232, 445, 454
TspDTI	ATGAA	4 cut(s)	16, 369, 480, 844
TspGWI	ACGGA	2 cut(s)	696, 822
TspRI	CASTG	3 cut(s)	20, 538, 675
XapI	RAATTY	3 cut(s)	225, 512, 811
XceI	RCATGY	1 cut(s)	764
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	3 cut(s)	482, 504, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.