Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7818673 .. 7819131

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG093400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAGTTTCGTACTGGATTGCAATCATTCTGTCACTTTTAGCAACAATTGACAACCATGTATTTCTACTGGAAGCTTCAGACGTAGGAGTTTGCTATGGAACGTTAGGGAATGACCTCCCTGCAGCAACAGAAGTAGTCAAACTCTACAAGAAACATAGTATCACCAAAATGAGGCTTTTTGATCCAAACACAGCAGCCCTTCAGGCACTGAAAGGGAGCGGAATCAGTGTCATACTTGGCATTCAAAACCAATACTTACCCGCACTGGCAGCAAGTCAAGAAGCTGTTAACGCATGGTTCACCACCAATGTTGAGCCTTACCTTGATGGAATTGAACTCAGTTATATTGCTGTTGGCAATGAGGTTATTCCCTGGCCCTTAGGCAACTACGTTTTTCCTGTAATGAGGTTTTACGGACTATGCTTGATGGCAGAGAGCTGTGTGGGATTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

152

Amino Acids

16.57

Weight (kDa)

4.97

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 140	1.3e-26	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AciI	CCGC	2 cut(s)	222, 264
AclI	AACGTT	1 cut(s)	104
AclWI	GGATC	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	63, 188
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	248, 338
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	3 cut(s)	77, 287, 441
AluI	AGCT	3 cut(s)	77, 287, 441
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	3 cut(s)	125, 197, 272
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	157, 295
AxyI	CCTNAGG	1 cut(s)	382
BbvI	GCAGC	3 cut(s)	137, 209, 284
BccI	CCATC	2 cut(s)	323, 424
BciT130I	CCWGG	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	126, 198, 273
BlsI	GCNGC	3 cut(s)	127, 199, 274
Bme1390I	CCNGG	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	3 cut(s)	20, 75, 273
Bse21I	CCTNAGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	374
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	3 cut(s)	20, 75, 273
BseXI	GCAGC	3 cut(s)	137, 209, 284
BshFI	GGCC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	222, 264
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	20, 75, 273
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	341, 382
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 272, 293
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	137, 209, 284
Bsu36I	CCTNAGG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	209, 235, 266
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	2 cut(s)	59, 297
CviJI	RGCY	7 cut(s)	77, 178, 200, 287, 319, 379, 441
CviKI_1	RGCY	7 cut(s)	77, 178, 200, 287, 319, 379, 441
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	341, 382
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco57I	CTGAAG	2 cut(s)	63, 188
Eco81I	CCTNAGG	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	374
FaeI	CATG	2 cut(s)	62, 300
FaiI	YATR	7 cut(s)	60, 99, 159, 236, 298, 348, 424
FatI	CATG	2 cut(s)	58, 296
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	126, 198, 273
Fsp4HI	GCNGC	3 cut(s)	126, 198, 273
GluI	GCNGC	3 cut(s)	126, 198, 273
HaeIII	GGCC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	62, 300
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	1 cut(s)	225
HpaI	GTTAAC	1 cut(s)	292
HphI	GGTGA	2 cut(s)	157, 295
Hpy166II	GTNNAC	2 cut(s)	292, 303
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	292, 303
HpyAV	CCTTC	1 cut(s)	212
HpyCH4IV	ACGT	3 cut(s)	84, 104, 393
HpyCH4V	TGCA	2 cut(s)	23, 125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 272, 293
HpyF3I	CTNAG	2 cut(s)	341, 382
HpySE526I	ACGT	3 cut(s)	84, 104, 393
Hsp92II	CATG	2 cut(s)	62, 300
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	56, 135, 191, 254, 361, 388, 414
Lsp1109I	GCAGC	3 cut(s)	137, 209, 284
MaeII	ACGT	3 cut(s)	84, 104, 393
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	1 cut(s)	186
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	1 cut(s)	184
MfeI	CAATTG	1 cut(s)	48
MluCI	AATT	2 cut(s)	48, 333
MnlI	CCTC	4 cut(s)	128, 168, 358, 402
MseI	TTAA	2 cut(s)	291, 452
MslI	CAYNNNNRTG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	3 cut(s)	206, 272, 293
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	62, 300
NmuCI	GTSAC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	127, 199, 274
Psp1406I	AACGTT	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	291, 452
SatI	GCNGC	3 cut(s)	126, 198, 273
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	48, 333
SsiI	CCGC	2 cut(s)	222, 264
StyD4I	CCNGG	1 cut(s)	374
TaiI	ACGT	3 cut(s)	87, 107, 396
TasI	AATT	2 cut(s)	48, 333
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	291, 452
Tru9I	TTAA	2 cut(s)	291, 452
TscAI	CASTG	3 cut(s)	216, 235, 273
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	3 cut(s)	125, 197, 272
Tsp45I	GTSAC	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	3 cut(s)	216, 235, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.