Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7121362 .. 7122393

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1089600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCAGTACTGCATTGGATTGCACTCATTTTATCCTTTGTAGCAACCATCCACAACCATTTAGGCCTCGTCGAAGCTTCGCCCGACATAGGTGTTTGCTATGGAATGATAGGAAATGACCTGCCTTCTGCAACAGAAGTGGTTAATCTCTACAAAACTTACGGAATCGGGAAGATGAGGCTCTTTGATCGCAACCCCTCAGCACTCCAAGCACTGAGAGGGAGACAAATCAATGTCACGCTAGGCATTCGTAACGAAGACTTACCAAATTTAGCTGTTAGTCAAGATGCTGTGAACTCATGGTTTGCATCCAATGTAGAGCCTTACTTAAATGATATCATATTCAACTACATTTCAGTTGGTAACGAGGTTATTCCTGGCGCCTTGGGTGACTATGTTTTGCCGGTAATGCTTTCTCTACAGAACATCCTAGATGAAAAAAATTTGGCCTGTATTAAGGTCACCACAGTTGTGCCAGGGTCTGCTTTGGGAGTTTCATACCCACCTTCGAGTGGTGAGTTTACGTCCGAGGTAAGTAGTATTATGAGTGGCATTGTTCCATTTTTAGCGCAACAATCTTCGCCTCTTATGATCAACGTGTACCCTTACTTTGCCTATGCATCGGACCCTGCAAACATTCGGTTAGACTACGCTCAGTTTACTGCGACAAGTCCCGTGGTTCAGGATGGGAGCTTGAGCTATTATAACATGTTTGATGCCATGGTTGATGCATTTTTGGCAGCAATGGAGAAAATAGATGGTGTTGGGGCGAATGTGGTTGATGTGGTGGTGTCTGAGAGCGGTTGGCCTTCAGATGGGAACGGAAATTTCACCACTCCAGGACTTGCTGCAACATATAACAAGAACTACATGAACCACATAACGTCGATAGCAGGGACACCGAAAAGACCTGGTGCTTACATTGAAGGGTACATGTTTGCCATGTTCAATGAGAATCAGAAACCTAATGGTGTGGAGCAACATTTTGGACTTTTTCATCCTAACATGCAACCTGTTTATCCTGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

344

Amino Acids

37.26

Weight (kDa)

4.65

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	30 - 342	1.6e-91	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
Acc36I	ACCTGC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	801
AciI	CCGC	1 cut(s)	801
AcsI	RAATTY	3 cut(s)	268, 442, 826
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	3 cut(s)	9, 602, 932
AfiI	CCNNNNNNNGG	3 cut(s)	89, 512, 815
AflIII	ACRYGT	3 cut(s)	597, 708, 933
AgsI	TTSAA	3 cut(s)	346, 926, 949
AjnI	CCWGG	4 cut(s)	376, 475, 838, 910
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	4 cut(s)	77, 275, 693, 699
AluI	AGCT	4 cut(s)	77, 275, 693, 699
Alw26I	GTCTC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	3 cut(s)	64, 447, 806
ApeKI	GCWGC	2 cut(s)	740, 848
ApoI	RAATTY	3 cut(s)	268, 442, 826
AspLEI	GCGC	2 cut(s)	383, 571
AspS9I	GGNCC	1 cut(s)	625
AsuHPI	GGTGA	4 cut(s)	401, 454, 527, 823
AvaII	GGWCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	752, 835
BccI	CCATC	4 cut(s)	56, 680, 752, 809
BciT130I	CCWGG	4 cut(s)	378, 477, 840, 912
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	2 cut(s)	242, 431
BfmI	CTRYAG	1 cut(s)	419
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	129
BisI	GCNGC	2 cut(s)	741, 849
BlsI	GCNGC	2 cut(s)	742, 850
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	4 cut(s)	378, 477, 840, 912
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	2 cut(s)	382, 627
BmrFI	CCNGG	4 cut(s)	378, 477, 840, 912
BmsI	GCATC	5 cut(s)	277, 317, 629, 706, 718
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	822
Bpu10I	CCTNAGC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	715
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	5 cut(s)	384, 476, 528, 675, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 512, 815
Bse118I	RCCGGY	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	4 cut(s)	378, 477, 840, 912
BseDI	CCNNGG	5 cut(s)	384, 476, 528, 675, 720
BseGI	GGATG	5 cut(s)	48, 308, 426, 691, 997
BseLI	CCNNNNNNNGG	3 cut(s)	89, 512, 815
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	4 cut(s)	206, 213, 668, 786
BseXI	GCAGC	2 cut(s)	752, 835
BshFI	GGCC	3 cut(s)	66, 449, 808
BshNI	GGYRCC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	657, 910
BslI	CCNNNNNNNGG	3 cut(s)	89, 512, 815
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	657, 910
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	66, 449, 808
Bsp143I	GATC	2 cut(s)	187, 591
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	1 cut(s)	801
BspANI	GGCC	3 cut(s)	66, 449, 808
BspCNI	CTCAG	4 cut(s)	207, 212, 667, 787
BspLI	GGNNCC	2 cut(s)	382, 627
BspMI	ACCTGC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	801
BsrDI	GCAATG	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	5 cut(s)	384, 476, 528, 675, 720
BssMI	GATC	2 cut(s)	187, 591
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	384, 720
Bst2UI	CCWGG	4 cut(s)	378, 477, 840, 912
Bst4CI	ACNGT	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	199, 215, 654, 795
BstDSI	CCRYGG	2 cut(s)	675, 720
BstEII	GGTNACC	1 cut(s)	460
BstF5I	GGATG	5 cut(s)	48, 308, 426, 691, 997
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	383, 571
BstKTI	GATC	2 cut(s)	190, 594
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	2 cut(s)	187, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 409, 737
BstNI	CCWGG	4 cut(s)	378, 477, 840, 912
BstNSI	RCATGY	3 cut(s)	712, 937, 1009
BstPI	GGTNACC	1 cut(s)	460
BstSCI	CCNGG	4 cut(s)	376, 475, 838, 910
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	752, 835
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	66, 449, 808
BtgI	CCRYGG	2 cut(s)	675, 720
BtsCI	GGATG	5 cut(s)	48, 308, 426, 691, 997
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	2 cut(s)	383, 571
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	625
CsiI	ACCWGGT	1 cut(s)	910
Csp6I	GTAC	3 cut(s)	8, 601, 931
CspCI	CAANNNNNGTGG	4 cut(s)	120, 155, 657, 692
CviAII	CATG	7 cut(s)	300, 709, 721, 871, 934, 943, 1006
CviJI	RGCY	9 cut(s)	66, 77, 181, 275, 322, 449, 693, 699, 808
CviKI_1	RGCY	9 cut(s)	66, 77, 181, 275, 322, 449, 693, 699, 808
CviQI	GTAC	3 cut(s)	8, 601, 931
DdeI	CTNAG	4 cut(s)	199, 215, 654, 795
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	2 cut(s)	189, 593
DpnII	GATC	2 cut(s)	187, 591
Eco130I	CCWWGG	2 cut(s)	384, 720
Eco147I	AGGCCT	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	795
Eco91I	GGTNACC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	460
EcoRII	CCWGG	4 cut(s)	376, 475, 838, 910
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	384, 720
EcoT22I	ATGCAT	2 cut(s)	622, 733
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	384, 720
FaeI	CATG	7 cut(s)	303, 712, 724, 874, 937, 946, 1009
FaqI	GGGAC	2 cut(s)	657, 910
FatI	CATG	7 cut(s)	299, 708, 720, 870, 933, 942, 1005
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	2 cut(s)	741, 849
FokI	GGATG	5 cut(s)	35, 295, 413, 698, 984
Fsp4HI	GCNGC	2 cut(s)	741, 849
FspBI	CTAG	2 cut(s)	242, 431
GlaI	GCGC	2 cut(s)	382, 570
GluI	GCNGC	2 cut(s)	741, 849
GsuI	CTGGAG	1 cut(s)	822
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	66, 449, 808
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	2 cut(s)	383, 571
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	7 cut(s)	303, 712, 724, 874, 937, 946, 1009
Hin6I	GCGC	2 cut(s)	381, 569
HinP1I	GCGC	2 cut(s)	381, 569
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	165, 955
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	4 cut(s)	401, 454, 527, 823
Hpy166II	GTNNAC	4 cut(s)	295, 522, 601, 660
Hpy188I	TCNGA	5 cut(s)	529, 625, 796, 814, 960
Hpy188III	TCNNGA	3 cut(s)	169, 284, 683
Hpy8I	GTNNAC	4 cut(s)	295, 522, 601, 660
Hpy99I	CGWCG	2 cut(s)	74, 889
HpyAV	CCTTC	4 cut(s)	135, 516, 819, 920
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	3 cut(s)	524, 597, 884
HpyCH4V	TGCA	9 cut(s)	13, 23, 131, 308, 620, 632, 731, 851, 1009
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 409, 737
HpyF3I	CTNAG	4 cut(s)	199, 215, 654, 795
HpySE526I	ACGT	3 cut(s)	524, 597, 884
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	7 cut(s)	303, 712, 724, 874, 937, 946, 1009
HspAI	GCGC	2 cut(s)	381, 569
KasI	GGCGCC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	187, 591
LmnI	GCTCC	2 cut(s)	690, 976
Lsp1109I	GCAGC	2 cut(s)	752, 835
LweI	GCATC	5 cut(s)	277, 317, 629, 706, 718
MabI	ACCWGGT	1 cut(s)	910
MaeI	CTAG	2 cut(s)	242, 431
MaeII	ACGT	3 cut(s)	524, 597, 884
MaeIII	GTNAC	5 cut(s)	235, 251, 362, 389, 460
MalI	GATC	2 cut(s)	189, 593
MbiI	CCGCTC	1 cut(s)	801
MboI	GATC	2 cut(s)	187, 591
MboII	GAAGA	3 cut(s)	184, 269, 570
MluCI	AATT	3 cut(s)	268, 442, 826
Mly113I	GGCGCC	1 cut(s)	381
MnlI	CCTC	7 cut(s)	77, 171, 208, 212, 361, 523, 594
Mph1103I	ATGCAT	2 cut(s)	622, 733
MseI	TTAA	4 cut(s)	144, 329, 456, 1030
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	4 cut(s)	378, 477, 840, 912
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	4 cut(s)	378, 477, 840, 912
MwoI	GCNNNNNNNGC	3 cut(s)	209, 409, 737
NarI	GGCGCC	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	2 cut(s)	187, 591
NlaIII	CATG	7 cut(s)	303, 712, 724, 874, 937, 946, 1009
NlaIV	GGNNCC	2 cut(s)	382, 627
NmuCI	GTSAC	3 cut(s)	235, 389, 460
NsiI	ATGCAT	2 cut(s)	622, 733
NspI	RCATGY	3 cut(s)	712, 937, 1009
OliI	CACNNNNGTG	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	66
PciI	ACATGT	2 cut(s)	708, 933
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	165, 955
PfoI	TCCNGGA	1 cut(s)	838
PkrI	GCNGC	2 cut(s)	742, 850
PluTI	GGCGCC	1 cut(s)	384
PscI	ACATGT	2 cut(s)	708, 933
PsiI	TTATAA	1 cut(s)	705
Psp6I	CCWGG	4 cut(s)	376, 475, 838, 910
PspEI	GGTNACC	1 cut(s)	460
PspGI	CCWGG	4 cut(s)	376, 475, 838, 910
PspN4I	GGNNCC	2 cut(s)	382, 627
PspPI	GGNCC	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	9, 602, 932
RsaNI	GTAC	3 cut(s)	8, 601, 931
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	4 cut(s)	144, 329, 456, 1030
SatI	GCNGC	2 cut(s)	741, 849
Sau3AI	GATC	2 cut(s)	187, 591
Sau96I	GGNCC	1 cut(s)	625
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	4 cut(s)	378, 477, 840, 912
SexAI	ACCWGGT	1 cut(s)	910
SfaNI	GCATC	5 cut(s)	277, 317, 629, 706, 718
SfcI	CTRYAG	1 cut(s)	419
SfoI	GGCGCC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	3 cut(s)	268, 442, 826
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	801
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	242, 431
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	4 cut(s)	376, 475, 838, 910
StyI	CCWWGG	2 cut(s)	384, 720
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	3 cut(s)	527, 600, 887
TaqI	TCGA	3 cut(s)	72, 509, 887
TasI	AATT	3 cut(s)	268, 442, 826
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	165, 955
Tru1I	TTAA	4 cut(s)	144, 329, 456, 1030
Tru9I	TTAA	4 cut(s)	144, 329, 456, 1030
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	3 cut(s)	235, 389, 460
TseI	GCWGC	2 cut(s)	740, 848
Tsp45I	GTSAC	3 cut(s)	235, 389, 460
TspDTI	ATGAA	4 cut(s)	450, 486, 887, 986
TspGWI	ACGGA	2 cut(s)	177, 837
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	3 cut(s)	268, 442, 826
XceI	RCATGY	3 cut(s)	712, 937, 1009
XspI	CTAG	2 cut(s)	242, 431
ZrmI	AGTACT	1 cut(s)	9
Zsp2I	ATGCAT	2 cut(s)	622, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.