Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

96441 .. 97169

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcagtgcaacagtggattgcattcattctgggtgttgtagcaacccttaacaaccatataggccttgtgggagcatcaaaaataggcgtttgctatggaatgctgggaagtgacctccctgcagcaacagaagttgtcaatctctacaaacaataccacattggcaaaatgaggctcttcgatcctaaccaagcagcgcttgaagctctaagagggagcggaattcgtgtcacagttggcattccgaacgaagacttggcagatttagcaagaagccaggatgctgtgaacacatggttcaacaacaatatagctccttatctacatgacattatcttcgactacataactgttggtaacgaggtcattctcggttcattaggcaactatgtcttgcctgtaatggagtcattacaaaacatccttaaagataaagggtatgtgacaaaggtgaccacagttgtgccatcaactgccctaggatcttcatacccgccttctagtggggaattcacacaagaggctagcagtgtcatgcccgacattctcaagtttttagcatcaaccctttcaccccttatgatcaatgtgtatccttactttgcctacaagtcagaccctgcccatgttcccttagactatgctcagttcacttcggataaaccagtggttcgagacggaaacttaatgtacttcttgatagccatggcagtcaggatgagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

242

Amino Acids

26.4

Weight (kDa)

5.27

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AciI	CCGC	2 cut(s)	222, 497
AclWI	GGATC	2 cut(s)	179, 493
AcsI	RAATTY	2 cut(s)	225, 512
AfaI	GTAC	1 cut(s)	695
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	206, 304
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	209, 317, 726
AluI	AGCT	3 cut(s)	209, 317, 726
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	2 cut(s)	179, 493
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	125, 197
ApoI	RAATTY	2 cut(s)	225, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	466, 567
AsuNHI	GCTAGC	1 cut(s)	527
AvrII	CCTAGG	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	137, 209
BccI	CCATC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	3 cut(s)	482, 504, 528
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	2 cut(s)	126, 198
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	2 cut(s)	127, 199
Bme1390I	CCNGG	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	3 cut(s)	86, 274, 572
BmtI	GCTAGC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	481, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	481, 708
BseGI	GGATG	3 cut(s)	289, 423, 726
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	668
BseXI	GCAGC	2 cut(s)	137, 209
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	672
BsmBI	CGTCTC	1 cut(s)	672
BsmI	GAATGC	3 cut(s)	23, 108, 243
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	184, 485, 585
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	2 cut(s)	222, 497
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	661
BspMAI	CTGCAG	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	179, 493
BspQI	GCTCTTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	481, 708
BssMI	GATC	3 cut(s)	184, 485, 585
BssT1I	CCWWGG	2 cut(s)	481, 708
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	4 cut(s)	15, 238, 355, 463
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	3 cut(s)	212, 637, 648
BstDSI	CCRYGG	1 cut(s)	708
BstEII	GGTNACC	1 cut(s)	454
BstF5I	GGATG	3 cut(s)	289, 423, 726
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	187, 488, 588
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	3 cut(s)	184, 485, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 269
BstNI	CCWGG	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	137, 209
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	3 cut(s)	289, 423, 726
BtsI	GCAGTG	2 cut(s)	12, 538
BtsIMutI	CAGTG	4 cut(s)	12, 20, 538, 675
Cac8I	GCNNGC	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	5 cut(s)	297, 329, 538, 629, 709
CviJI	RGCY	8 cut(s)	66, 178, 209, 279, 317, 527, 707, 726
CviKI_1	RGCY	8 cut(s)	66, 178, 209, 279, 317, 527, 707, 726
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	3 cut(s)	212, 637, 648
DpnI	GATC	3 cut(s)	186, 487, 587
DpnII	GATC	3 cut(s)	184, 485, 585
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	481, 708
Eco147I	AGGCCT	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	454
EcoO65I	GGTNACC	1 cut(s)	454
EcoRI	GAATTC	2 cut(s)	225, 512
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	481, 708
ErhI	CCWWGG	2 cut(s)	481, 708
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	5 cut(s)	300, 332, 541, 632, 712
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	5 cut(s)	296, 328, 537, 628, 708
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	126, 198
FokI	GGATG	2 cut(s)	296, 410
Fsp4HI	GCNGC	2 cut(s)	126, 198
FspBI	CTAG	3 cut(s)	482, 504, 528
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	126, 198
GsaI	CCCAGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	300, 332, 541, 632, 712
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	410
HphI	GGTGA	2 cut(s)	466, 567
Hpy166II	GTNNAC	2 cut(s)	292, 654
Hpy188I	TCNGA	3 cut(s)	249, 619, 661
Hpy188III	TCNNGA	3 cut(s)	677, 700, 718
Hpy8I	GTNNAC	2 cut(s)	292, 654
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	4 cut(s)	15, 238, 355, 463
HpyCH4V	TGCA	3 cut(s)	10, 23, 125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 269
HpyF3I	CTNAG	3 cut(s)	212, 637, 648
Hsp92II	CATG	5 cut(s)	300, 332, 541, 632, 712
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	184, 485, 585
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	74, 219, 322
LpnPI	CCDG	9 cut(s)	17, 92, 135, 266, 293, 414, 636, 681, 703
Lsp1109I	GCAGC	2 cut(s)	137, 209
LweI	GCATC	3 cut(s)	86, 274, 572
MaeI	CTAG	3 cut(s)	482, 504, 528
MaeIII	GTNAC	5 cut(s)	113, 232, 359, 445, 454
MalI	GATC	3 cut(s)	186, 487, 587
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	3 cut(s)	184, 485, 585
MboII	GAAGA	4 cut(s)	172, 266, 331, 480
MflI	RGATCY	1 cut(s)	485
MluCI	AATT	2 cut(s)	225, 512
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	5 cut(s)	128, 168, 209, 358, 517
MseI	TTAA	3 cut(s)	51, 429, 689
MslI	CAYNNNNRTG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	3 cut(s)	23, 108, 243
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	206, 269
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	3 cut(s)	184, 485, 585
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	5 cut(s)	300, 332, 541, 632, 712
NmuCI	GTSAC	4 cut(s)	113, 232, 445, 454
OliI	CACNNNNGTG	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	185
PctI	GAATGC	3 cut(s)	23, 108, 243
PkrI	GCNGC	2 cut(s)	127, 199
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	51, 429, 689
SatI	GCNGC	2 cut(s)	126, 198
Sau3AI	GATC	3 cut(s)	184, 485, 585
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	6 cut(s)	120, 211, 319, 369, 456, 728
SfaNI	GCATC	3 cut(s)	86, 274, 572
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	2 cut(s)	225, 512
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	222, 497
SspMI	CTAG	3 cut(s)	482, 504, 528
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	481, 708
TaaI	ACNGT	4 cut(s)	15, 238, 355, 463
TaqI	TCGA	3 cut(s)	183, 342, 676
TasI	AATT	2 cut(s)	225, 512
TatI	WGTACW	1 cut(s)	693
Tru1I	TTAA	3 cut(s)	51, 429, 689
Tru9I	TTAA	3 cut(s)	51, 429, 689
TscAI	CASTG	4 cut(s)	12, 20, 538, 675
TseFI	GTSAC	4 cut(s)	113, 232, 445, 454
TseI	GCWGC	2 cut(s)	125, 197
Tsp45I	GTSAC	4 cut(s)	113, 232, 445, 454
TspDTI	ATGAA	3 cut(s)	16, 369, 480
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	4 cut(s)	12, 20, 538, 675
XapI	RAATTY	2 cut(s)	225, 512
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	3 cut(s)	482, 504, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.