Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

6892700 .. 6894197

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTGTCATAGAAAGACGTTCTTGTTGAAGTTTTTGTGCGTGGCATTTCTGTTAAACTACAGCAATGTTGGCTTTGTAGACGCAGCAACAAACATTGGCTTGAACTACGGCCTCCTTGGAGACAACCTCCCGCCTCCATCTGAAGTTATCAACCTCTACAAGTCCTTAAGTGTTACCAATATTCGGATCTTCGACACAACTACGGATGTCCTTAACGCCTTTCGAGGGAATCGCAATATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCGAAGAAGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACATCACGTTCATTGCTGTCGGGAACGAAGTCATCCCAGGGGAAATCGGCTCTTATGTGCTACCCGTCATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCAGCACCACGGTGGCTATGACCAACCTTGGCCAGTCATATCCACCTTCGGCCGGAGATTTCATGCCTCAAGCACGTGAACAACTTACCCCGGTGCTGAAGTTTTTGTCTCAAACAAATACGCCTATCCTCGTCAACATCTACCCCTACTTCGCATATGCTGCTGATCCTATCAACATTCAGCTCGACTATGCCATCTTCAACACCAACAAGGTCGTGGTCCAAGACGGGCCACTTGGTTATACAAACATGTTCGATGTGATATTTGATGCGTTCGTATGGGCAATGGAGAAAGAAGGTGTGAAGGATTTACCAATGGTGGTAACAGAAACTGGATGGCCATCTGCTGGTAACGGAAACTTAACGACTCCAGATATCGCATCTATATACAATACCAATTTTGTTAAACATGTGGAAAGCGGTAAAGGGACGCCAAAGAGACCAAAGAGTGGCATTAGTGGATTTCTATTTGCGACGTTCAATGAGAATCAAAAGCCAGCGGGAACCGAACAAAATTTTGGGTTATATAATCCAACAGATATGAAGCCCATCTACAAGATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

344

Amino Acids

37.96

Weight (kDa)

4.96

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 342	2.8e-83	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	815, 917
AccI	GTMKAC	2 cut(s)	81, 255
AciI	CCGC	3 cut(s)	134, 888, 968
AclWI	GGATC	2 cut(s)	197, 629
AcoI	YGGCCR	3 cut(s)	499, 519, 806
AcsI	RAATTY	1 cut(s)	982
AcuI	CTGAAG	2 cut(s)	165, 587
AcvI	CACGTG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	899
AfiI	CCNNNNNNNGG	5 cut(s)	186, 228, 521, 815, 917
AflII	CTTAAG	1 cut(s)	169
AflIII	ACRYGT	2 cut(s)	717, 877
AgsI	TTSAA	4 cut(s)	31, 106, 670, 949
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	311, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	969, 1001
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	3 cut(s)	302, 344, 652
AluI	AGCT	3 cut(s)	302, 344, 652
Alw26I	GTCTC	4 cut(s)	117, 461, 582, 901
AlwI	GGATC	2 cut(s)	197, 629
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	5 cut(s)	112, 499, 519, 698, 806
ApeKI	GCWGC	2 cut(s)	86, 629
ApoI	RAATTY	1 cut(s)	982
AspS9I	GGNCC	2 cut(s)	688, 698
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	688
BalI	TGGCCA	2 cut(s)	501, 808
BarI	GAAGNNNNNNTAC	1 cut(s)	1004
BbrPI	CACGTG	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	98, 616
BccI	CCATC	5 cut(s)	148, 671, 798, 817, 1025
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	2 cut(s)	313, 390
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	4 cut(s)	117, 461, 582, 901
BfmI	CTRYAG	1 cut(s)	61
BfrI	CTTAAG	1 cut(s)	169
BisI	GCNGC	2 cut(s)	87, 630
BlsI	GCNGC	2 cut(s)	88, 631
Bme1390I	CCNGG	3 cut(s)	313, 390, 560
Bme18I	GGWCC	1 cut(s)	688
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	688, 698
BmiI	GGNNCC	1 cut(s)	973
BmrFI	CCNGG	3 cut(s)	313, 390, 560
BmsI	GCATC	2 cut(s)	727, 857
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpmI	CTGGAG	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	2 cut(s)	467, 808
BsaHI	GRCGYC	1 cut(s)	899
BsaI	GGTCTC	1 cut(s)	901
BsaJI	CCNNGG	6 cut(s)	118, 388, 389, 477, 496, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	5 cut(s)	186, 228, 521, 815, 917
Bse1I	ACTGG	2 cut(s)	502, 805
Bse3DI	GCAATG	3 cut(s)	73, 363, 759
Bse8I	GATNNNNATC	2 cut(s)	467, 808
BseBI	CCWGG	2 cut(s)	313, 390
BseDI	CCNNGG	6 cut(s)	118, 388, 389, 477, 496, 558
BseGI	GGATG	3 cut(s)	214, 384, 809
BseJI	GATNNNNATC	2 cut(s)	467, 808
BseLI	CCNNNNNNNGG	5 cut(s)	186, 228, 521, 815, 917
BseMI	GCAATG	3 cut(s)	73, 363, 759
BseNI	ACTGG	2 cut(s)	502, 805
BseRI	GAGGAG	1 cut(s)	466
BseX3I	CGGCCG	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	98, 616
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	5 cut(s)	114, 501, 521, 700, 808
BsiEI	CGRYCG	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	522, 560
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	5 cut(s)	186, 228, 521, 815, 917
BsmAI	GTCTC	4 cut(s)	117, 461, 582, 901
BsmFI	GGGAC	1 cut(s)	910
BsnI	GGCC	5 cut(s)	114, 501, 521, 700, 808
Bso31I	GGTCTC	1 cut(s)	901
Bsp143I	GATC	4 cut(s)	189, 462, 468, 634
BspACI	CCGC	3 cut(s)	134, 888, 968
BspANI	GGCC	5 cut(s)	114, 501, 521, 700, 808
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	973
BspPI	GGATC	2 cut(s)	197, 629
BspTI	CTTAAG	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	901
BsrDI	GCAATG	3 cut(s)	73, 363, 759
BsrI	ACTGG	2 cut(s)	502, 805
BssECI	CCNNGG	6 cut(s)	118, 388, 389, 477, 496, 558
BssMI	GATC	4 cut(s)	189, 462, 468, 634
BssNI	GRCGYC	1 cut(s)	899
BssT1I	CCWWGG	2 cut(s)	118, 496
Bst2UI	CCWGG	2 cut(s)	313, 390
Bst4CI	ACNGT	1 cut(s)	481
BstACI	GRCGYC	1 cut(s)	899
BstAFI	CTTAAG	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	966
BstDEI	CTNAG	2 cut(s)	274, 340
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	214, 384, 809
BstKTI	GATC	4 cut(s)	192, 465, 471, 637
BstMAI	GTCTC	4 cut(s)	117, 461, 582, 901
BstMBI	GATC	4 cut(s)	189, 462, 468, 634
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 629
BstNI	CCWGG	2 cut(s)	313, 390
BstNSI	RCATGY	2 cut(s)	721, 881
BstSCI	CCNGG	3 cut(s)	311, 388, 558
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	98, 616
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BstZI	CGGCCG	1 cut(s)	519
BsuRI	GGCC	5 cut(s)	114, 501, 521, 700, 808
BtgI	CCRYGG	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	214, 384, 809
Cac8I	GCNNGC	1 cut(s)	966
CaiI	CAGNNNCTG	1 cut(s)	800
CciI	TCATGA	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	688, 698
CseI	GACGC	2 cut(s)	92, 907
CsiI	ACCWGGT	1 cut(s)	311
CviAII	CATG	4 cut(s)	421, 532, 718, 878
DdeI	CTNAG	2 cut(s)	274, 340
DpnI	GATC	4 cut(s)	191, 464, 470, 636
DpnII	GATC	4 cut(s)	189, 462, 468, 634
EaeI	YGGCCR	3 cut(s)	499, 519, 806
EagI	CGGCCG	1 cut(s)	519
EclXI	CGGCCG	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	118, 496
Eco31I	GGTCTC	1 cut(s)	901
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	688
Eco52I	CGGCCG	1 cut(s)	519
Eco57I	CTGAAG	2 cut(s)	165, 587
Eco72I	CACGTG	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	311, 388
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	2 cut(s)	118, 496
ErhI	CCWWGG	2 cut(s)	118, 496
FaeI	CATG	4 cut(s)	424, 535, 721, 881
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	4 cut(s)	420, 531, 717, 877
FauI	CCCGC	2 cut(s)	141, 961
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	2 cut(s)	81, 255
Fnu4HI	GCNGC	2 cut(s)	87, 630
FokI	GGATG	3 cut(s)	221, 371, 816
Fsp4HI	GCNGC	2 cut(s)	87, 630
GluI	GCNGC	2 cut(s)	87, 630
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	5 cut(s)	114, 501, 521, 700, 808
HapII	CCGG	2 cut(s)	522, 560
HgaI	GACGC	2 cut(s)	92, 907
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	4 cut(s)	424, 535, 721, 881
HincII	GTYRAC	3 cut(s)	307, 352, 604
HindII	GTYRAC	3 cut(s)	307, 352, 604
HinfI	GANTC	4 cut(s)	232, 454, 835, 955
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	522, 560
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	6 cut(s)	82, 256, 307, 352, 548, 604
Hpy188I	TCNGA	3 cut(s)	145, 189, 245
Hpy188III	TCNNGA	6 cut(s)	319, 373, 421, 460, 466, 839
Hpy8I	GTNNAC	6 cut(s)	82, 256, 307, 352, 548, 604
Hpy99I	CGWCG	1 cut(s)	946
HpyAV	CCTTC	3 cut(s)	525, 758, 766
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	5 cut(s)	20, 258, 359, 544, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 629
HpyF3I	CTNAG	2 cut(s)	274, 340
HpySE526I	ACGT	5 cut(s)	20, 258, 359, 544, 944
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	4 cut(s)	424, 535, 721, 881
Ksp22I	TGATCA	1 cut(s)	468
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	189, 462, 468, 634
Lsp1109I	GCAGC	2 cut(s)	98, 616
LweI	GCATC	2 cut(s)	727, 857
MabI	ACCWGGT	1 cut(s)	311
MaeII	ACGT	5 cut(s)	20, 258, 359, 544, 944
MaeIII	GTNAC	4 cut(s)	175, 319, 790, 818
MalI	GATC	4 cut(s)	191, 464, 470, 636
MboI	GATC	4 cut(s)	189, 462, 468, 634
MboII	GAAGA	4 cut(s)	184, 274, 308, 658
MflI	RGATCY	1 cut(s)	189
MlsI	TGGCCA	2 cut(s)	501, 808
MluCI	AATT	2 cut(s)	865, 982
MluNI	TGGCCA	2 cut(s)	501, 808
MlyI	GAGTC	2 cut(s)	463, 829
MmeI	TCCRAC	1 cut(s)	1025
MnlI	CCTC	9 cut(s)	125, 140, 147, 167, 221, 271, 444, 546, 608
Mox20I	TGGCCA	2 cut(s)	501, 808
MscI	TGGCCA	2 cut(s)	501, 808
MseI	TTAA	6 cut(s)	56, 170, 216, 306, 830, 873
MslI	CAYNNNNRTG	1 cut(s)	479
Msp20I	TGGCCA	2 cut(s)	501, 808
MspA1I	CMGCKG	1 cut(s)	968
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	2 cut(s)	522, 560
MspR9I	CCNGG	3 cut(s)	313, 390, 560
MvaI	CCWGG	2 cut(s)	313, 390
MwoI	GCNNNNNNNGC	2 cut(s)	72, 629
NciI	CCSGG	1 cut(s)	560
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	4 cut(s)	189, 462, 468, 634
NlaIII	CATG	4 cut(s)	424, 535, 721, 881
NlaIV	GGNNCC	1 cut(s)	973
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	2 cut(s)	721, 881
OliI	CACNNNNGTG	1 cut(s)	479
PagI	TCATGA	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	389
PciI	ACATGT	2 cut(s)	717, 877
PfeI	GAWTC	2 cut(s)	232, 955
PflMI	CCANNNNNTGG	2 cut(s)	815, 917
PkrI	GCNGC	2 cut(s)	88, 631
PleI	GAGTC	2 cut(s)	462, 829
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	462, 829
Ppu21I	YACGTR	1 cut(s)	545
PscI	ACATGT	2 cut(s)	717, 877
Psp6I	CCWGG	2 cut(s)	311, 388
PspCI	CACGTG	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	311, 388
PspN4I	GGNNCC	1 cut(s)	973
PspPI	GGNCC	2 cut(s)	688, 698
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	6 cut(s)	56, 170, 216, 306, 830, 873
SatI	GCNGC	2 cut(s)	87, 630
Sau3AI	GATC	4 cut(s)	189, 462, 468, 634
Sau96I	GGNCC	2 cut(s)	688, 698
SchI	GAGTC	2 cut(s)	463, 829
ScrFI	CCNGG	3 cut(s)	313, 390, 560
SexAI	ACCWGGT	1 cut(s)	311
SfaNI	GCATC	2 cut(s)	727, 857
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	169, 537
SmoI	CTYRAG	2 cut(s)	169, 537
Sse9I	AATT	2 cut(s)	865, 982
SsiI	CCGC	3 cut(s)	134, 888, 968
SspI	AATATT	1 cut(s)	184
StyD4I	CCNGG	3 cut(s)	311, 388, 558
StyI	CCWWGG	2 cut(s)	118, 496
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	5 cut(s)	23, 261, 362, 547, 947
TaqI	TCGA	5 cut(s)	195, 226, 449, 654, 723
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	2 cut(s)	865, 982
TfiI	GAWTC	2 cut(s)	232, 955
Tru1I	TTAA	6 cut(s)	56, 170, 216, 306, 830, 873
Tru9I	TTAA	6 cut(s)	56, 170, 216, 306, 830, 873
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	86, 629
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	352, 437, 520, 1025
TspGWI	ACGGA	2 cut(s)	221, 837
Van91I	CCANNNNNTGG	2 cut(s)	815, 917
Vha464I	CTTAAG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	1 cut(s)	982
XceI	RCATGY	2 cut(s)	721, 881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XmiI	GTMKAC	2 cut(s)	81, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.