Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7383300 .. 7424831

Gene Structure 41532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTTTGCACAGGTTGTGCGAAAAATGTTGTTCAGAAACTCCTTACTAATTAATGATAACTTAGCAGTTTCACATGGAAATGACCTTCCTGCAGCAACAGATGTTATCGATCTCTACAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACCTAACCATGCAGCGCTCGATGCCCTGAAAGGGAGTGGAATCGGTGTCACGATAGGCATTCCAAACGATGAGTTGGCGCATTTGGCAACAGGCCAAGCTGCTGTGGACATATGGTTCAACGACAATGTAGCTCCTTATATAAATGACGGTAACATCAATTACATCGCCGTCGGTAACGAGCCCGACCTTCCCGGGTCAGTAGGCATCAATAATATCACGCCGGTAATGAAGTTGTTTCACAACATAGTTAGTGACAAAGGGATTAAGGTGACCACAGTTGTGTCAACATTTATCCTAGGATCTTCATACCCACCTTCGAGTGGTGCATTCACATCAGAGGCTAGTAGTGTAATGTCCGGCATTTTTGAGTTTTTAGCATCAACCGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAAACCCTGGCAGTGTTCGCATAGACTATGCTCAATTCACTGCAACAGACACGGTGGTGCAAGACGGAGCATACAGCTACCACAATCTGTTTGATGCCATGGTCGATTCTTTCGTGGCAGCGATGGAGAAAGCAGGCGGCGGAAATGTCAAAGTTGCGGTGGCTGAAAGTGGTTGGCCTTCTGATGGCAGCGGAAATATCAGCACTCCACAACTCGCAGCCACATATAACAAGAATTTCATGAATCATATCCTTAAAAAGGAAGGGACACCAAGAAGACCTGGTGAAAACATTGAAGGGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAATGGGGAGGACGAAAAACACTATGGTCTTTTTTATTCCAACATGCAACCTGTAAACCTGTTTATGATGTATTTCCTTGAACAAAACCTTCTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

338

Amino Acids

36.78

Weight (kDa)

5.12

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	25 - 324	6.4e-83	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	720, 723, 740, 774
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	817
AfeI	AGCGCT	1 cut(s)	168
AfiI	CCNNNNNNNGG	4 cut(s)	183, 473, 767, 841
AgsI	TTSAA	4 cut(s)	271, 878, 901, 998
AjnI	CCWGG	2 cut(s)	589, 862
AleI	CACNNNNGTG	2 cut(s)	431, 638
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
AluBI	AGCT	3 cut(s)	251, 284, 660
AluI	AGCT	3 cut(s)	251, 284, 660
AlwI	GGATC	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	168
AoxI	GGCC	2 cut(s)	244, 758
ApeKI	GCWGC	6 cut(s)	92, 164, 251, 701, 771, 800
ApoI	RAATTY	1 cut(s)	817
AseI	ATTAAT	1 cut(s)	51
AspA2I	CCTAGG	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	169, 232
AsuC2I	CCSGG	2 cut(s)	345, 346
AsuHPI	GGTGA	2 cut(s)	433, 878
AsuII	TTCGAA	1 cut(s)	150
AvaI	CYCGRG	1 cut(s)	344
AvrII	CCTAGG	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	865
BbvI	GCAGC	6 cut(s)	104, 176, 238, 713, 783, 812
BccI	CCATC	2 cut(s)	700, 761
BceAI	ACGGC	2 cut(s)	142, 305
BciT130I	CCWGG	2 cut(s)	591, 864
BciVI	GTATCC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	2 cut(s)	345, 346
BfaI	CTAG	2 cut(s)	449, 495
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	7 cut(s)	93, 165, 252, 702, 721, 772, 801
BlnI	CCTAGG	1 cut(s)	448
BlsI	GCNGC	7 cut(s)	94, 166, 253, 703, 722, 773, 802
Bme1390I	CCNGG	4 cut(s)	345, 346, 591, 864
BmeT110I	CYCGRG	1 cut(s)	344
BmrFI	CCNGG	4 cut(s)	345, 346, 591, 864
BmsI	GCATC	4 cut(s)	163, 366, 539, 667
BpiI	GAAGAC	1 cut(s)	865
Bpu14I	TTCGAA	1 cut(s)	150
BpuMI	CCSGG	2 cut(s)	345, 346
Bsa29I	ATCGAT	1 cut(s)	108
BsaJI	CCNNGG	4 cut(s)	344, 448, 589, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 473, 767, 841
Bse118I	RCCGGY	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	591, 864
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	344, 448, 589, 681
BseLI	CCNNNNNNNGG	4 cut(s)	183, 473, 767, 841
BseMI	GCAATG	1 cut(s)	129
BseXI	GCAGC	6 cut(s)	104, 176, 238, 713, 783, 812
BshFI	GGCC	2 cut(s)	246, 760
BshVI	ATCGAT	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	345, 374, 510
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	4 cut(s)	183, 473, 767, 841
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	2 cut(s)	210, 479
BsnI	GGCC	2 cut(s)	246, 760
BsoBI	CYCGRG	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	109, 452, 552
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	4 cut(s)	720, 723, 740, 774
BspANI	GGCC	2 cut(s)	246, 760
BspDI	ATCGAT	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	822
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	4 cut(s)	344, 448, 589, 681
BssMI	GATC	3 cut(s)	109, 452, 552
BssT1I	CCWWGG	2 cut(s)	448, 681
Bst2UI	CCWGG	2 cut(s)	591, 864
Bst4CI	ACNGT	3 cut(s)	302, 430, 637
Bst6I	CTCTTC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	1 cut(s)	61
BstDSI	CCRYGG	1 cut(s)	681
BstEII	GGTNACC	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	839
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 232
BstKTI	GATC	3 cut(s)	112, 455, 555
BstMBI	GATC	3 cut(s)	109, 452, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 236, 600
BstNI	CCWGG	2 cut(s)	591, 864
BstNSI	RCATGY	1 cut(s)	964
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	4 cut(s)	343, 344, 589, 862
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	6 cut(s)	104, 176, 238, 713, 783, 812
BstV2I	GAAGAC	1 cut(s)	865
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	246, 760
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	681
BtgZI	GCGATG	2 cut(s)	301, 719
BtsI	GCAGTG	2 cut(s)	601, 621
BtsIMutI	CAGTG	2 cut(s)	601, 621
Cac8I	GCNNGC	1 cut(s)	718
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	2 cut(s)	169, 232
Cfr10I	RCCGGY	1 cut(s)	373
Cfr9I	CCCGGG	1 cut(s)	344
ClaI	ATCGAT	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	862
CviAII	CATG	6 cut(s)	74, 161, 682, 823, 895, 961
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	3 cut(s)	111, 454, 554
DpnII	GATC	3 cut(s)	109, 452, 552
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	738
Eco130I	CCWWGG	2 cut(s)	448, 681
Eco24I	GRGCYC	1 cut(s)	336
Eco47III	AGCGCT	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	839
EcoO65I	GGTNACC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	589, 862
EcoT14I	CCWWGG	2 cut(s)	448, 681
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	448, 681
FaeI	CATG	6 cut(s)	77, 164, 685, 826, 898, 964
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	6 cut(s)	73, 160, 681, 822, 894, 960
FauNDI	CATATG	1 cut(s)	263
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	7 cut(s)	93, 165, 252, 702, 721, 772, 801
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	7 cut(s)	93, 165, 252, 702, 721, 772, 801
FspBI	CTAG	2 cut(s)	449, 495
GlaI	GCGC	2 cut(s)	168, 231
GluI	GCNGC	7 cut(s)	93, 165, 252, 702, 721, 772, 801
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	246, 760
HapII	CCGG	3 cut(s)	345, 374, 510
HhaI	GCGC	2 cut(s)	169, 232
Hin1II	CATG	6 cut(s)	77, 164, 685, 826, 898, 964
Hin6I	GCGC	2 cut(s)	167, 230
HinP1I	GCGC	2 cut(s)	167, 230
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	4 cut(s)	192, 539, 689, 826
HpaII	CCGG	3 cut(s)	345, 374, 510
HphI	GGTGA	2 cut(s)	433, 878
Hpy166II	GTNNAC	3 cut(s)	259, 438, 973
Hpy188I	TCNGA	3 cut(s)	35, 490, 766
Hpy188III	TCNNGA	3 cut(s)	202, 823, 1014
Hpy8I	GTNNAC	3 cut(s)	259, 438, 973
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	7 cut(s)	95, 350, 477, 771, 839, 872, 1016
HpyCH4III	ACNGT	3 cut(s)	302, 430, 637
HpyCH4V	TGCA	8 cut(s)	8, 92, 134, 164, 479, 626, 643, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 236, 600
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	6 cut(s)	77, 164, 685, 826, 898, 964
HspAI	GCGC	2 cut(s)	167, 230
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	3 cut(s)	109, 452, 552
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	289, 650
Lsp1109I	GCAGC	6 cut(s)	104, 176, 238, 713, 783, 812
LweI	GCATC	4 cut(s)	163, 366, 539, 667
MabI	ACCWGGT	1 cut(s)	862
MaeI	CTAG	2 cut(s)	449, 495
MaeIII	GTNAC	5 cut(s)	199, 302, 326, 404, 421
MalI	GATC	3 cut(s)	111, 454, 554
MboI	GATC	3 cut(s)	109, 452, 552
MboII	GAAGA	3 cut(s)	139, 447, 870
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	5 cut(s)	48, 138, 310, 617, 817
MmeI	TCCRAC	1 cut(s)	981
MnlI	CCTC	2 cut(s)	484, 919
MseI	TTAA	3 cut(s)	51, 417, 837
MslI	CAYNNNNRTG	3 cut(s)	78, 431, 638
MspA1I	CMGCKG	1 cut(s)	774
MspI	CCGG	3 cut(s)	345, 374, 510
MspR9I	CCNGG	4 cut(s)	345, 346, 591, 864
Mva1269I	GAATGC	2 cut(s)	210, 479
MvaI	CCWGG	2 cut(s)	591, 864
MwoI	GCNNNNNNNGC	3 cut(s)	173, 236, 600
NciI	CCSGG	2 cut(s)	345, 346
NcoI	CCATGG	1 cut(s)	681
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	3 cut(s)	109, 452, 552
NlaIII	CATG	6 cut(s)	77, 164, 685, 826, 898, 964
NmuCI	GTSAC	3 cut(s)	199, 404, 421
NspI	RCATGY	1 cut(s)	964
NspV	TTCGAA	1 cut(s)	150
OliI	CACNNNNGTG	2 cut(s)	431, 638
PagI	TCATGA	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PctI	GAATGC	2 cut(s)	210, 479
PfeI	GAWTC	4 cut(s)	192, 539, 689, 826
PkrI	GCNGC	7 cut(s)	94, 166, 253, 703, 722, 773, 802
PshBI	ATTAAT	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	589, 862
PspEI	GGTNACC	1 cut(s)	421
PspGI	CCWGG	2 cut(s)	589, 862
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	452
RseI	CAYNNNNRTG	3 cut(s)	78, 431, 638
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	51, 417, 837
SatI	GCNGC	7 cut(s)	93, 165, 252, 702, 721, 772, 801
Sau3AI	GATC	3 cut(s)	109, 452, 552
ScrFI	CCNGG	4 cut(s)	345, 346, 591, 864
SduI	GDGCHC	1 cut(s)	336
SexAI	ACCWGGT	1 cut(s)	862
SfaNI	GCATC	4 cut(s)	163, 366, 539, 667
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	3 cut(s)	78, 431, 638
Sse9I	AATT	5 cut(s)	48, 138, 310, 617, 817
SsiI	CCGC	4 cut(s)	720, 723, 740, 774
SspMI	CTAG	2 cut(s)	449, 495
StyD4I	CCNGG	4 cut(s)	343, 344, 589, 862
StyI	CCWWGG	2 cut(s)	448, 681
TaaI	ACNGT	3 cut(s)	302, 430, 637
TaqI	TCGA	5 cut(s)	108, 150, 171, 470, 687
TasI	AATT	5 cut(s)	48, 138, 310, 617, 817
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	4 cut(s)	192, 539, 689, 826
Tru1I	TTAA	3 cut(s)	51, 417, 837
Tru9I	TTAA	3 cut(s)	51, 417, 837
TscAI	CASTG	2 cut(s)	601, 628
TseFI	GTSAC	3 cut(s)	199, 404, 421
TseI	GCWGC	6 cut(s)	92, 164, 251, 701, 771, 800
Tsp45I	GTSAC	3 cut(s)	199, 404, 421
TspDTI	ATGAA	4 cut(s)	395, 447, 811, 839
TspGWI	ACGGA	1 cut(s)	663
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	2 cut(s)	601, 628
VspI	ATTAAT	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	839
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	1 cut(s)	964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	917
XmaI	CCCGGG	1 cut(s)	344
XmaJI	CCTAGG	1 cut(s)	448
XspI	CTAG	2 cut(s)	449, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.