Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7820082 .. 7821107

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG093500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCTGGGAAGTGACCTCCCTGCAGCAACAGAAGTTGTCAATCTCTACAAACAATACCACATTGGCAAAATGAGGCTCTTCGATCCTAACCAAGCAGCGCTTGAAGCTCTAAGAGGGAGCGGAATTCGTGTCACAGTTGGCATTCCGAACGAAGACTTGGCAGATTTAGCAAGAAGCCAGGATGCTGTGAACACATGGTTCAACAACAATATAGCTCCTTATCTACATGACATTATCTTCGACTACATAACCGTTGGTAACGAGGTCATTCCCGGTTCATTAGGCAACTATGTCTTGCCTGTAATGGAGTCGTTACAAAACATCCTTAAAGATAAAGGGTATGTGACAAAGGTGACCACAGTTGTGCCATCAACTGCCCTAGGATCTTCATACCCGCCTTCTAGTGGGGAATTCACACAAGAGGCTAGCAGTGTCATGCCCGACATTCTCAAGTTTTTAGCATCAACCCTTTCACCCCTTATGATCAATTCAGACCCTGCCCATGTTCCCTTAGACTATGCTCAGTTCACTTCGGATAAACCAGTGGTTCGAGACGGAAACTTAATGTACTTCTGCCTGTTTGATGCCACTGTGGATGCCTTTTTGGCAGCAATGGCGAAAGCAGGAAACGGGCATGTCAGAGTTGTGGTGTCGGAGAGTGGTTGGCCTTCGGACGGGAACGGAAATTTCACCACTCCAGAGCTTGCAATGACATATAACCAGAACTTCATGTACCATTGCCTTTCCATGGAAGGGACACCAAAAAGACCCGGTGAACCTATTGAAGCGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAAGGGCGAGGAGCAACATTTTGGTCTCTTCTATCCCAACATGGAACCTGTTTATTATATGCCTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

298

Amino Acids

32.86

Weight (kDa)

4.73

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 295	8.7e-79	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	2 cut(s)	120, 395
AclWI	GGATC	2 cut(s)	77, 391
AcsI	RAATTY	3 cut(s)	123, 410, 685
AfaI	GTAC	2 cut(s)	569, 734
AfeI	AGCGCT	1 cut(s)	99
AfiI	CCNNNNNNNGG	4 cut(s)	404, 674, 748, 753
AgsI	TTSAA	4 cut(s)	104, 202, 785, 808
AjnI	CCWGG	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	107, 215, 703
AluI	AGCT	3 cut(s)	107, 215, 703
Alw26I	GTCTC	2 cut(s)	546, 854
AlwI	GGATC	2 cut(s)	77, 391
AlwNI	CAGNNNCTG	1 cut(s)	497
Aor51HI	AGCGCT	1 cut(s)	99
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	3 cut(s)	23, 95, 608
ApoI	RAATTY	3 cut(s)	123, 410, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspA2I	CCTAGG	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	273, 771
AsuHPI	GGTGA	4 cut(s)	364, 465, 682, 785
AsuNHI	GCTAGC	1 cut(s)	425
AvrII	CCTAGG	1 cut(s)	379
AxyI	CCTNAGG	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	35, 107, 620
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	2 cut(s)	273, 771
BcoDI	GTCTC	2 cut(s)	546, 854
BfaI	CTAG	3 cut(s)	380, 402, 426
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	605
BisI	GCNGC	3 cut(s)	24, 96, 609
BlnI	CCTAGG	1 cut(s)	379
BlsI	GCNGC	3 cut(s)	25, 97, 610
Bme1390I	CCNGG	3 cut(s)	179, 273, 771
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	3 cut(s)	179, 273, 771
BmsI	GCATC	4 cut(s)	172, 470, 574, 586
BmtI	GCTAGC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	2 cut(s)	273, 771
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	2 cut(s)	379, 747
Bsc4I	CCNNNNNNNGG	4 cut(s)	404, 674, 748, 753
Bse1I	ACTGG	1 cut(s)	542
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	3 cut(s)	618, 714, 736
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	379, 747
BseGI	GGATG	3 cut(s)	187, 321, 601
BseLI	CCNNNNNNNGG	4 cut(s)	404, 674, 748, 753
BseMI	GCAATG	3 cut(s)	618, 714, 736
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	3 cut(s)	35, 107, 620
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	273, 771
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	4 cut(s)	404, 674, 748, 753
BsmAI	GTCTC	2 cut(s)	546, 854
BsmBI	CGTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	769
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	667
Bso31I	GGTCTC	1 cut(s)	854
Bsp143I	GATC	3 cut(s)	82, 383, 483
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	2 cut(s)	120, 395
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	25
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	77, 391
BspQI	GCTCTTC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	3 cut(s)	618, 714, 736
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	379, 747
BssMI	GATC	3 cut(s)	82, 383, 483
BssT1I	CCWWGG	2 cut(s)	379, 747
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	4 cut(s)	136, 253, 361, 592
Bst6I	CTCTTC	2 cut(s)	83, 857
BstC8I	GCNNGC	2 cut(s)	427, 705
BstDEI	CTNAG	4 cut(s)	110, 511, 522, 825
BstDSI	CCRYGG	1 cut(s)	747
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	3 cut(s)	187, 321, 601
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	3 cut(s)	85, 386, 486
BstMAI	GTCTC	2 cut(s)	546, 854
BstMBI	GATC	3 cut(s)	82, 383, 483
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 167, 605, 614
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	638
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	177, 271, 769
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	35, 107, 620
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	1 cut(s)	667
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	3 cut(s)	187, 321, 601
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	436, 549, 588
Cac8I	GCNNGC	2 cut(s)	427, 705
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	568, 733
CviAII	CATG	9 cut(s)	195, 227, 436, 503, 635, 730, 748, 802, 865
CviJI	RGCY	7 cut(s)	76, 107, 177, 215, 425, 667, 703
CviKI_1	RGCY	7 cut(s)	76, 107, 177, 215, 425, 667, 703
CviQI	GTAC	2 cut(s)	568, 733
DdeI	CTNAG	4 cut(s)	110, 511, 522, 825
DpnI	GATC	3 cut(s)	84, 385, 485
DpnII	GATC	3 cut(s)	82, 383, 483
Eam1104I	CTCTTC	2 cut(s)	83, 857
EarI	CTCTTC	2 cut(s)	83, 857
Eco130I	CCWWGG	2 cut(s)	379, 747
Eco31I	GGTCTC	1 cut(s)	854
Eco47III	AGCGCT	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	825
Eco91I	GGTNACC	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	352
EcoRI	GAATTC	2 cut(s)	123, 410
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	379, 747
ErhI	CCWWGG	2 cut(s)	379, 747
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	9 cut(s)	198, 230, 439, 506, 638, 733, 751, 805, 868
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	9 cut(s)	194, 226, 435, 502, 634, 729, 747, 801, 864
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	24, 96, 609
FokI	GGATG	3 cut(s)	194, 308, 608
Fsp4HI	GCNGC	3 cut(s)	24, 96, 609
FspBI	CTAG	3 cut(s)	380, 402, 426
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	24, 96, 609
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	2 cut(s)	273, 771
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	9 cut(s)	198, 230, 439, 506, 638, 733, 751, 805, 868
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	273, 771
HphI	GGTGA	4 cut(s)	364, 465, 682, 785
Hpy166II	GTNNAC	3 cut(s)	190, 528, 776
Hpy188I	TCNGA	6 cut(s)	147, 493, 535, 641, 655, 673
Hpy188III	TCNNGA	2 cut(s)	551, 698
Hpy8I	GTNNAC	3 cut(s)	190, 528, 776
HpyAV	CCTTC	3 cut(s)	408, 678, 746
HpyCH4III	ACNGT	4 cut(s)	136, 253, 361, 592
HpyCH4V	TGCA	2 cut(s)	23, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 167, 605, 614
HpyF3I	CTNAG	4 cut(s)	110, 511, 522, 825
Hsp92II	CATG	9 cut(s)	198, 230, 439, 506, 638, 733, 751, 805, 868
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	3 cut(s)	82, 383, 483
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	3 cut(s)	117, 220, 835
Lsp1109I	GCAGC	3 cut(s)	35, 107, 620
LweI	GCATC	4 cut(s)	172, 470, 574, 586
MaeI	CTAG	3 cut(s)	380, 402, 426
MaeIII	GTNAC	6 cut(s)	11, 130, 257, 312, 343, 352
MalI	GATC	3 cut(s)	84, 385, 485
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	3 cut(s)	82, 383, 483
MboII	GAAGA	5 cut(s)	70, 164, 229, 378, 844
MflI	RGATCY	1 cut(s)	383
MluCI	AATT	4 cut(s)	123, 410, 487, 685
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	6 cut(s)	26, 66, 107, 256, 415, 826
MseI	TTAA	2 cut(s)	327, 563
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	2 cut(s)	273, 771
MspR9I	CCNGG	3 cut(s)	179, 273, 771
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	104, 167, 605, 614
NciI	CCSGG	2 cut(s)	273, 771
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	3 cut(s)	82, 383, 483
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	9 cut(s)	198, 230, 439, 506, 638, 733, 751, 805, 868
NlaIV	GGNNCC	1 cut(s)	870
NmuCI	GTSAC	4 cut(s)	11, 130, 343, 352
NspI	RCATGY	1 cut(s)	638
OliI	CACNNNNGTG	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	141
PkrI	GCNGC	3 cut(s)	25, 97, 610
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	870
PsrI	GAACNNNNNNTAC	2 cut(s)	716, 748
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	2 cut(s)	569, 734
RsaNI	GTAC	2 cut(s)	568, 733
RseI	CAYNNNNRTG	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	327, 563
SatI	GCNGC	3 cut(s)	24, 96, 609
Sau3AI	GATC	3 cut(s)	82, 383, 483
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	179, 273, 771
SetI	ASST	9 cut(s)	18, 109, 217, 267, 354, 705, 781, 826, 874
SfaNI	GCATC	4 cut(s)	172, 470, 574, 586
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	4 cut(s)	123, 410, 487, 685
SsiI	CCGC	2 cut(s)	120, 395
SspMI	CTAG	3 cut(s)	380, 402, 426
StyD4I	CCNGG	3 cut(s)	177, 271, 769
StyI	CCWWGG	2 cut(s)	379, 747
TaaI	ACNGT	4 cut(s)	136, 253, 361, 592
TaqI	TCGA	3 cut(s)	81, 240, 550
TasI	AATT	4 cut(s)	123, 410, 487, 685
TatI	WGTACW	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	327, 563
Tru9I	TTAA	2 cut(s)	327, 563
TscAI	CASTG	3 cut(s)	436, 549, 595
TseFI	GTSAC	4 cut(s)	11, 130, 343, 352
TseI	GCWGC	3 cut(s)	23, 95, 608
Tsp45I	GTSAC	4 cut(s)	11, 130, 343, 352
TspDTI	ATGAA	3 cut(s)	267, 378, 718
TspGWI	ACGGA	2 cut(s)	570, 696
TspRI	CASTG	3 cut(s)	436, 549, 595
XapI	RAATTY	3 cut(s)	123, 410, 685
XceI	RCATGY	1 cut(s)	638
XmaJI	CCTAGG	1 cut(s)	379
XspI	CTAG	3 cut(s)	380, 402, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.