AT5G20330

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6871511 .. 6873112
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20330.1

Sequence Viewer

Length: 1038 bp
ATGCTCTATTCACCTAAGAAGCTGTTCTTGTTCTTCCTCTCGTGCATTGTGCTGTATGTCAACTCCAACAACAGTGGCTTCGTAACCGCAGCAAATAGCATCGGCTTGAACTACGGACTCCTCGGTGACAACCTCCCGTCTCCTTCCAATGTTATCAACCTTTACAAGTCCATAGGCATTAGTAGAATCCGAATCTTCGACCCGAACACTGAGGTACTCAATGCCTTACGTGGTCACCGCGATATTGAAGTCACTGTTGGCGTTAAGGACCAAGACTTGGCTGCTCTTGCTGCAAGCGAAGAAGCTGTTAAGGGCTGGTTCGCGGCCAACATCGAGTCTTACTTAGCTGACGTCAACATCACATTTATTACCGTTGGTAACGAAGTCATCCCCGGACCAATCGGTCCTCAAGTGCTTCCCGTCATGCAGTCTCTAACCAACCTAGTCAAGTCGAGGAATCTTCCGATCTCGATAAGCACCGTGGTGGCTATGTCGAACCTGGAGCAGTCGTATCCACCTTCCGCGGGAATGTTCACCTCCCAGGCGCGGGAACAACTTGTCCCCGTGTTGAAACTATTGTCTCAAACAAGCACACCAATCCTTGTCAACATATACCCTTACTTCGCTTATGCGTCCGACCCAGCCAACATCCGTCTCGACTATGCCAGCTTTAACACTAAGTCCATCGTGGTCCAAGATGGATCATTGGGCTATTCAAACATGTTTGATGCAATCTTTGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGCGTTAAAAATTTACCAATGGTGGTGTCCGAGACCGGATGGCCATCCGCGGGGAACGGGAACTTTACCACGCCGGCTATTGCGTCCACCTACAACAGAAATTTTGTGAAGCATATAGCAAGCGGAAAAGGGACGCCTAAAAGGCCTAACAAGAGCATGAACGGGTTTTTGTTTGCAACGTTCAATGAAAATCAGAAGCCGGCCGGGACTGAACAAAACTTTGGTTTATACAATCCAAGTGATATGAAGCCTATCTACAAGCTATTCTAA

Protein Analysis

345

Amino Acids

37.68

Weight (kDa)

7.71

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 34 - 344 6.7e-86 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 402
AatII GACGTC 1 cut(s) 354
AccB7I CCANNNNNTGG 1 cut(s) 277
AccII CGCG 5 cut(s) 240, 323, 524, 547, 818
AciI CCGC 9 cut(s) 87, 238, 323, 522, 524, 547, 816, 818, 891
AclI AACGTT 1 cut(s) 947
AclWI GGATC 1 cut(s) 709
AcoI YGGCCR 3 cut(s) 324, 809, 969
AcsI RAATTY 2 cut(s) 778, 868
AcyI GRCGYC 2 cut(s) 351, 902
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 5 cut(s) 277, 524, 546, 547, 818
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 5 cut(s) 109, 248, 571, 717, 952
AjnI CCWGG 2 cut(s) 498, 540
AjuI GAANNNNNNNTTGG 4 cut(s) 240, 272, 972, 1004
AleI CACNNNNGTG 1 cut(s) 482
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
AluBI AGCT 5 cut(s) 22, 305, 347, 669, 1030
AluI AGCT 5 cut(s) 22, 305, 347, 669, 1030
Alw26I GTCTC 5 cut(s) 144, 435, 585, 659, 794
AlwI GGATC 1 cut(s) 709
AoxI GGCC 4 cut(s) 324, 809, 911, 969
ApeKI GCWGC 3 cut(s) 89, 281, 290
ApoI RAATTY 2 cut(s) 778, 868
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 268, 395, 404, 691
AsuC2I CCSGG 2 cut(s) 393, 973
AsuHPI GGTGA 4 cut(s) 3, 137, 227, 526
AvaII GGWCC 4 cut(s) 268, 395, 404, 691
BalI TGGCCA 1 cut(s) 811
BarI GAAGNNNNNNTAC 1 cut(s) 1007
BauI CACGAG 1 cut(s) 40
BbvI GCAGC 3 cut(s) 101, 268, 277
BccI CCATC 4 cut(s) 692, 692, 801, 820
BciT130I CCWGG 2 cut(s) 500, 542
BciVI GTATCC 1 cut(s) 522
BcnI CCSGG 2 cut(s) 393, 973
BcoDI GTCTC 5 cut(s) 144, 435, 585, 659, 794
BfaI CTAG 1 cut(s) 443
BfuI GTATCC 1 cut(s) 522
BglI GCCNNNNNGGC 1 cut(s) 910
BisI GCNGC 4 cut(s) 90, 282, 291, 324
BlsI GCNGC 4 cut(s) 91, 283, 292, 325
Bme1390I CCNGG 4 cut(s) 393, 500, 542, 973
Bme18I GGWCC 4 cut(s) 268, 395, 404, 691
BmgT120I GGNCC 4 cut(s) 268, 395, 404, 691
BmrFI CCNGG 4 cut(s) 393, 500, 542, 973
BmsI GCATC 3 cut(s) 108, 718, 730
BpmI CTGGAG 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 393
BpuMI CCSGG 2 cut(s) 393, 973
BsaAI YACGTR 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 811
BsaHI GRCGYC 2 cut(s) 351, 902
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 6 cut(s) 121, 391, 480, 522, 540, 816
BsaWI WCCGGW 1 cut(s) 803
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 524, 546, 547, 818
Bse118I RCCGGY 2 cut(s) 841, 967
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 1 cut(s) 811
BseBI CCWGG 2 cut(s) 500, 542
BseDI CCNNGG 6 cut(s) 121, 391, 480, 522, 540, 816
BseGI GGATG 4 cut(s) 387, 648, 812, 812
BseJI GATNNNNATC 1 cut(s) 811
BseLI CCNNNNNNNGG 5 cut(s) 277, 524, 546, 547, 818
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 110
BseX3I CGGCCG 1 cut(s) 969
BseXI GCAGC 3 cut(s) 101, 268, 277
BseYI CCCAGC 1 cut(s) 640
Bsh1236I CGCG 5 cut(s) 240, 323, 524, 547, 818
Bsh1285I CGRYCG 1 cut(s) 972
BshFI GGCC 4 cut(s) 326, 811, 913, 971
BsiEI CGRYCG 1 cut(s) 972
BsiSI CCGG 5 cut(s) 393, 804, 842, 968, 972
BslFI GGGAC 3 cut(s) 545, 913, 988
BslI CCNNNNNNNGG 5 cut(s) 277, 524, 546, 547, 818
BsmAI GTCTC 5 cut(s) 144, 435, 585, 659, 794
BsmBI CGTCTC 2 cut(s) 144, 659
BsmFI GGGAC 3 cut(s) 545, 913, 988
BsnI GGCC 4 cut(s) 326, 811, 913, 971
Bso31I GGTCTC 1 cut(s) 794
Bsp143I GATC 2 cut(s) 465, 701
BspACI CCGC 9 cut(s) 87, 238, 323, 522, 524, 547, 816, 818, 891
BspANI GGCC 4 cut(s) 326, 811, 913, 971
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 5 cut(s) 240, 323, 524, 547, 818
BspPI GGATC 1 cut(s) 709
BspTNI GGTCTC 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 2 cut(s) 841, 967
BssAI RCCGGY 2 cut(s) 841, 967
BssECI CCNNGG 6 cut(s) 121, 391, 480, 522, 540, 816
BssMI GATC 2 cut(s) 465, 701
BssNI GRCGYC 2 cut(s) 351, 902
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 500, 542
Bst4CI ACNGT 4 cut(s) 74, 256, 373, 481
BstACI GRCGYC 2 cut(s) 351, 902
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 5 cut(s) 295, 667, 843, 889, 969
BstDEI CTNAG 4 cut(s) 15, 210, 343, 678
BstDSI CCRYGG 3 cut(s) 480, 522, 816
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 4 cut(s) 387, 648, 812, 812
BstFNI CGCG 5 cut(s) 240, 323, 524, 547, 818
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 2 cut(s) 468, 704
BstMAI GTCTC 5 cut(s) 144, 435, 585, 659, 794
BstMBI GATC 2 cut(s) 465, 701
BstMCI CGRYCG 1 cut(s) 972
BstMWI GCNNNNNNNGC 3 cut(s) 287, 290, 910
BstNI CCWGG 2 cut(s) 500, 542
BstNSI RCATGY 1 cut(s) 724
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 4 cut(s) 391, 498, 540, 971
BstUI CGCG 5 cut(s) 240, 323, 524, 547, 818
BstV1I GCAGC 3 cut(s) 101, 268, 277
BstZI CGGCCG 1 cut(s) 969
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 4 cut(s) 326, 811, 913, 971
BtgI CCRYGG 3 cut(s) 480, 522, 816
BtsCI GGATG 4 cut(s) 387, 648, 812, 812
BtsIMutI CAGTG 3 cut(s) 79, 207, 252
Cac8I GCNNGC 5 cut(s) 295, 667, 843, 889, 969
CfoI GCGC 1 cut(s) 547
Cfr10I RCCGGY 2 cut(s) 841, 967
Cfr13I GGNCC 4 cut(s) 268, 395, 404, 691
Cfr42I CCGCGG 2 cut(s) 525, 819
CseI GACGC 3 cut(s) 621, 840, 910
Csp6I GTAC 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 3 cut(s) 424, 721, 925
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 4 cut(s) 15, 210, 343, 678
DpnI GATC 2 cut(s) 467, 703
DpnII GATC 2 cut(s) 465, 701
DrdI GACNNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 402
EaeI YGGCCR 3 cut(s) 324, 809, 969
EagI CGGCCG 1 cut(s) 969
EclXI CGGCCG 1 cut(s) 969
Eco147I AGGCCT 1 cut(s) 913
Eco31I GGTCTC 1 cut(s) 794
Eco47I GGWCC 4 cut(s) 268, 395, 404, 691
Eco52I CGGCCG 1 cut(s) 969
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 498, 540
Esp3I CGTCTC 2 cut(s) 144, 659
FaeI CATG 3 cut(s) 427, 724, 928
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 3 cut(s) 545, 913, 988
FatI CATG 3 cut(s) 423, 720, 924
FauI CCCGC 3 cut(s) 517, 540, 811
Fnu4HI GCNGC 4 cut(s) 90, 282, 291, 324
FokI GGATG 4 cut(s) 374, 635, 799, 819
Fsp4HI GCNGC 4 cut(s) 90, 282, 291, 324
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 546
GluI GCNGC 4 cut(s) 90, 282, 291, 324
GsaI CCCAGC 1 cut(s) 644
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 4 cut(s) 326, 811, 913, 971
HapII CCGG 5 cut(s) 393, 804, 842, 968, 972
HgaI GACGC 3 cut(s) 621, 840, 910
HhaI GCGC 1 cut(s) 547
Hin1I GRCGYC 2 cut(s) 351, 902
Hin1II CATG 3 cut(s) 427, 724, 928
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HincII GTYRAC 3 cut(s) 61, 355, 607
HindII GTYRAC 3 cut(s) 61, 355, 607
HinfI GANTC 5 cut(s) 117, 186, 192, 335, 457
HpaII CCGG 5 cut(s) 393, 804, 842, 968, 972
HphI GGTGA 4 cut(s) 3, 137, 227, 526
Hpy166II GTNNAC 5 cut(s) 61, 355, 534, 607, 855
Hpy188I TCNGA 5 cut(s) 191, 465, 637, 799, 963
Hpy188III TCNNGA 2 cut(s) 469, 656
Hpy8I GTNNAC 5 cut(s) 61, 355, 534, 607, 855
HpyAV CCTTC 4 cut(s) 153, 528, 757, 761
HpyCH4III ACNGT 4 cut(s) 74, 256, 373, 481
HpyCH4IV ACGT 3 cut(s) 229, 351, 947
HpyCH4V TGCA 5 cut(s) 45, 293, 427, 731, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 290, 910
HpyF3I CTNAG 4 cut(s) 15, 210, 343, 678
HpySE526I ACGT 3 cut(s) 229, 351, 947
Hsp92I GRCGYC 2 cut(s) 351, 902
Hsp92II CATG 3 cut(s) 427, 724, 928
HspAI GCGC 1 cut(s) 545
KroI GCCGGC 2 cut(s) 841, 967
KroNI GCCGGC 2 cut(s) 843, 969
KspI CCGCGG 2 cut(s) 525, 819
Kzo9I GATC 2 cut(s) 465, 701
LmnI GCTCC 1 cut(s) 502
Lsp1109I GCAGC 3 cut(s) 101, 268, 277
LweI GCATC 3 cut(s) 108, 718, 730
MaeI CTAG 1 cut(s) 443
MaeII ACGT 3 cut(s) 229, 351, 947
MaeIII GTNAC 5 cut(s) 82, 125, 233, 250, 377
MalI GATC 2 cut(s) 467, 703
MboI GATC 2 cut(s) 465, 701
MboII GAAGA 4 cut(s) 25, 187, 311, 452
MlsI TGGCCA 1 cut(s) 811
MluCI AATT 2 cut(s) 778, 868
MluNI TGGCCA 1 cut(s) 811
MlyI GAGTC 2 cut(s) 111, 344
MmeI TCCRAC 2 cut(s) 90, 660
MnlI CCTC 7 cut(s) 47, 131, 143, 205, 417, 447, 547
Mox20I TGGCCA 1 cut(s) 811
MroNI GCCGGC 2 cut(s) 841, 967
MroXI GAANNNNTTC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 811
MseI TTAA 4 cut(s) 264, 309, 672, 774
MslI CAYNNNNRTG 1 cut(s) 482
Msp20I TGGCCA 1 cut(s) 811
MspA1I CMGCKG 2 cut(s) 524, 818
MspI CCGG 5 cut(s) 393, 804, 842, 968, 972
MspR9I CCNGG 4 cut(s) 393, 500, 542, 973
MvaI CCWGG 2 cut(s) 500, 542
MvnI CGCG 5 cut(s) 240, 323, 524, 547, 818
MwoI GCNNNNNNNGC 3 cut(s) 287, 290, 910
NaeI GCCGGC 2 cut(s) 843, 969
NciI CCSGG 2 cut(s) 393, 973
NdeII GATC 2 cut(s) 465, 701
NgoMIV GCCGGC 2 cut(s) 841, 967
NlaIII CATG 3 cut(s) 427, 724, 928
NmuCI GTSAC 3 cut(s) 125, 233, 250
NspI RCATGY 1 cut(s) 724
OliI CACNNNNGTG 1 cut(s) 482
PceI AGGCCT 1 cut(s) 913
PciI ACATGT 1 cut(s) 720
PdiI GCCGGC 2 cut(s) 843, 969
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 3 cut(s) 186, 192, 457
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 4 cut(s) 91, 283, 292, 325
PleI GAGTC 2 cut(s) 111, 343
PpsI GAGTC 2 cut(s) 111, 343
Ppu21I YACGTR 1 cut(s) 230
PscI ACATGT 1 cut(s) 720
Psp1406I AACGTT 1 cut(s) 947
Psp6I CCWGG 2 cut(s) 498, 540
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 2 cut(s) 498, 540
PspPI GGNCC 4 cut(s) 268, 395, 404, 691
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 482
SacII CCGCGG 2 cut(s) 525, 819
SaqAI TTAA 4 cut(s) 264, 309, 672, 774
SatI GCNGC 4 cut(s) 90, 282, 291, 324
Sau3AI GATC 2 cut(s) 465, 701
Sau96I GGNCC 4 cut(s) 268, 395, 404, 691
SchI GAGTC 2 cut(s) 111, 344
ScrFI CCNGG 4 cut(s) 393, 500, 542, 973
SfaNI GCATC 3 cut(s) 108, 718, 730
Sfr303I CCGCGG 2 cut(s) 525, 819
SgrBI CCGCGG 2 cut(s) 525, 819
SinI GGWCC 4 cut(s) 268, 395, 404, 691
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
Sse9I AATT 2 cut(s) 778, 868
SseBI AGGCCT 1 cut(s) 913
SsiI CCGC 9 cut(s) 87, 238, 323, 522, 524, 547, 816, 818, 891
SspMI CTAG 1 cut(s) 443
StuI AGGCCT 1 cut(s) 913
StyD4I CCNGG 4 cut(s) 391, 498, 540, 971
TaaI ACNGT 4 cut(s) 74, 256, 373, 481
TaiI ACGT 3 cut(s) 232, 354, 950
TaqI TCGA 6 cut(s) 198, 333, 452, 470, 494, 657
TaqII GACCGA 1 cut(s) 392
TasI AATT 2 cut(s) 778, 868
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 3 cut(s) 186, 192, 457
Tru1I TTAA 4 cut(s) 264, 309, 672, 774
Tru9I TTAA 4 cut(s) 264, 309, 672, 774
TscAI CASTG 3 cut(s) 79, 214, 259
TseFI GTSAC 3 cut(s) 125, 233, 250
TseI GCWGC 3 cut(s) 89, 281, 290
Tsp45I GTSAC 3 cut(s) 125, 233, 250
TspDTI ATGAA 3 cut(s) 941, 969, 1028
TspGWI ACGGA 2 cut(s) 129, 641
TspRI CASTG 3 cut(s) 79, 214, 259
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 4 cut(s) 268, 395, 404, 691
XapI RAATTY 2 cut(s) 778, 868
XceI RCATGY 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 443
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.