Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

18730607 .. 18731629

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G200500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAGCAGTGCCTTGGGTTGCACTCTTTCTGTCCTTTGCAGCAACCATCCACAACCATATAGGCCTTGTGGAAGCTTCAGTTGACATAGGTGTTTGCTATGGAATGTTAGGAGATGACCTCCCTGCTGCTACAGAAGTGGTTAATCTGTACAAAATAAACGGTATCGGCAAGATGAGGCTCTTTGATCCTAATCCGGCCGCACTCGAAGCACTGAGAGGGAAAGAAATTGATGTCAGTCTAGGCATTCGAAACGAAGACTTGCCCCAATTGACAGGAAGTGCAGATGCTGTGAACTCATGGTTTGCAACCAATGTAGAGCCCTACCTGAATGACATTGTCTTCAATTACATTTCTGTTGGCAATGAGGTTATTCCAGGGTCCTTAGGCATCTATGTTTTGCCTGTAATGCAGTCTCTACAGAAAATTCTCGATGATAGAAACTTGGCTGGTATTAAGGTGTCCACAGTTGTGCCAGGGTCTGCCTTAGGAGTTTCATTTCCACCTTCAAGTGGCGAGTTCGCACTAGAGGCAAGCAGTGTCATGAGTGGCATTGTTGCATTTTTAGCACAGCGAGGATCACCCCTTCTGATCAATGTGTATCCCTACTTTTCTTATGCATCAGACCCTGTCAATATTCGCTTAGACTATGCTCAATTTACCGCAACAAGTCCAGTGGTTAAGGATGGGGAGTTGAGCTATTATAACCTGTTTGATGCCGCAGTTGATTCTTTTCTGGCAGCAATGGAAAAAGTAGGCGGGGCAAATGTCGATGTGGTGGTGTCTGAGAGTGGTTGGCCTTCTGATGGGAATGGAAATTTCACCACTCCAGAACTTGCAGGGACATATAACAGGAACTTCTTGAAACATATAACCTCAAACGCTGGGACACCGAAAAGACCTGGTGCTTACATTGAGGGGTACATTTTTGCCATGTTCAATGAGAATCAGAAACCTGAAGGTGTGGAGCAGCATTTCGGACTTTTTCATCCTAACATGCAACCTGTTTATTCTATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

341

Amino Acids

36.62

Weight (kDa)

4.58

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AciI	CCGC	4 cut(s)	201, 663, 720, 759
AclWI	GGATC	2 cut(s)	182, 586
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	426, 817
AcuI	CTGAAG	2 cut(s)	63, 978
AfaI	GTAC	2 cut(s)	152, 923
AfiI	CCNNNNNNNGG	2 cut(s)	512, 806
AgsI	TTSAA	4 cut(s)	346, 510, 865, 940
AjnI	CCWGG	3 cut(s)	376, 475, 901
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	2 cut(s)	77, 699
AluI	AGCT	2 cut(s)	77, 699
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	182, 586
AlwNI	CAGNNNCTG	3 cut(s)	290, 482, 629
AoxI	GGCC	3 cut(s)	64, 198, 797
ApeKI	GCWGC	5 cut(s)	5, 41, 128, 740, 970
ApoI	RAATTY	2 cut(s)	426, 817
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	573, 814
AsuII	TTCGAA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	381
AxyI	CCTNAGG	2 cut(s)	385, 487
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	2 cut(s)	264, 334
BbvI	GCAGC	5 cut(s)	17, 53, 115, 752, 982
BccI	CCATC	3 cut(s)	56, 680, 800
BciT130I	CCWGG	3 cut(s)	378, 477, 903
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	2 cut(s)	242, 527
BfmI	CTRYAG	2 cut(s)	132, 419
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	7 cut(s)	6, 42, 129, 201, 720, 741, 971
BlsI	GCNGC	7 cut(s)	7, 43, 130, 202, 721, 742, 972
Bme1390I	CCNGG	3 cut(s)	378, 477, 903
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	3 cut(s)	378, 477, 903
BmsI	GCATC	4 cut(s)	277, 399, 629, 706
BpiI	GAAGAC	2 cut(s)	264, 334
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	14, 377, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 806
Bse1I	ACTGG	1 cut(s)	674
Bse21I	CCTNAGG	2 cut(s)	385, 487
Bse3DI	GCAATG	2 cut(s)	370, 750
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	3 cut(s)	378, 477, 903
BseDI	CCNNGG	3 cut(s)	14, 377, 476
BseGI	GGATG	3 cut(s)	48, 691, 988
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	512, 806
BseMI	GCAATG	2 cut(s)	370, 750
BseMII	CTCAG	2 cut(s)	206, 777
BseNI	ACTGG	1 cut(s)	674
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	5 cut(s)	17, 53, 115, 752, 982
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	66, 200, 799
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	2 cut(s)	856, 901
BslI	CCNNNNNNNGG	2 cut(s)	512, 806
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	2 cut(s)	856, 901
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	66, 200, 799
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	187, 578, 591
BspACI	CCGC	4 cut(s)	201, 663, 720, 759
BspANI	GGCC	3 cut(s)	66, 200, 799
BspCNI	CTCAG	2 cut(s)	207, 778
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	2 cut(s)	182, 586
BspT104I	TTCGAA	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	370, 750
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	3 cut(s)	14, 377, 476
BssMI	GATC	3 cut(s)	187, 578, 591
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	3 cut(s)	378, 477, 903
Bst4CI	ACNGT	2 cut(s)	164, 469
BstAUI	TGTACA	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	5 cut(s)	215, 385, 487, 643, 786
BstF5I	GGATG	3 cut(s)	48, 691, 988
BstKTI	GATC	3 cut(s)	190, 581, 594
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	3 cut(s)	187, 578, 591
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 409, 530, 566
BstNI	CCWGG	3 cut(s)	378, 477, 903
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	3 cut(s)	376, 475, 901
BstSFI	CTRYAG	2 cut(s)	132, 419
BstV1I	GCAGC	5 cut(s)	17, 53, 115, 752, 982
BstV2I	GAAGAC	2 cut(s)	264, 334
BstZI	CGGCCG	1 cut(s)	198
Bsu36I	CCTNAGG	2 cut(s)	385, 487
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	66, 200, 799
BtsCI	GGATG	3 cut(s)	48, 691, 988
BtsI	GCAGTG	2 cut(s)	15, 544
BtsIMutI	CAGTG	4 cut(s)	15, 212, 544, 681
Cac8I	GCNNGC	1 cut(s)	535
CaiI	CAGNNNCTG	3 cut(s)	290, 482, 629
CciI	TCATGA	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	381
CsiI	ACCWGGT	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	151, 922
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	4 cut(s)	300, 544, 934, 997
CviJI	RGCY	8 cut(s)	66, 77, 181, 200, 322, 449, 699, 799
CviKI_1	RGCY	8 cut(s)	66, 77, 181, 200, 322, 449, 699, 799
CviQI	GTAC	2 cut(s)	151, 922
DdeI	CTNAG	5 cut(s)	215, 385, 487, 643, 786
DpnI	GATC	3 cut(s)	189, 580, 593
DpnII	GATC	3 cut(s)	187, 578, 591
EaeI	YGGCCR	1 cut(s)	198
EagI	CGGCCG	1 cut(s)	198
EclXI	CGGCCG	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	14
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	381
Eco52I	CGGCCG	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	63, 978
Eco81I	CCTNAGG	2 cut(s)	385, 487
EcoO109I	RGGNCCY	1 cut(s)	381
EcoRII	CCWGG	3 cut(s)	376, 475, 901
EcoT14I	CCWWGG	1 cut(s)	14
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	4 cut(s)	303, 547, 937, 1000
FaqI	GGGAC	2 cut(s)	856, 901
FatI	CATG	4 cut(s)	299, 543, 933, 996
FauI	CCCGC	1 cut(s)	752
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	7 cut(s)	6, 42, 129, 201, 720, 741, 971
FokI	GGATG	3 cut(s)	35, 698, 975
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	7 cut(s)	6, 42, 129, 201, 720, 741, 971
FspBI	CTAG	2 cut(s)	242, 527
GluI	GCNGC	7 cut(s)	6, 42, 129, 201, 720, 741, 971
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	3 cut(s)	66, 200, 799
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	4 cut(s)	303, 547, 937, 1000
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	728, 946
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	573, 814
Hpy166II	GTNNAC	3 cut(s)	85, 295, 465
Hpy188I	TCNGA	6 cut(s)	591, 625, 787, 805, 951, 980
Hpy188III	TCNNGA	4 cut(s)	431, 544, 830, 862
Hpy8I	GTNNAC	3 cut(s)	85, 295, 465
HpyAV	CCTTC	4 cut(s)	516, 596, 810, 953
HpyCH4III	ACNGT	2 cut(s)	164, 469
HpyCH4V	TGCA	9 cut(s)	23, 41, 284, 308, 412, 560, 620, 839, 1000
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 409, 530, 566
HpyF3I	CTNAG	5 cut(s)	215, 385, 487, 643, 786
Hsp92II	CATG	4 cut(s)	303, 547, 937, 1000
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	187, 578, 591
LmnI	GCTCC	1 cut(s)	967
Lsp1109I	GCAGC	5 cut(s)	17, 53, 115, 752, 982
LweI	GCATC	4 cut(s)	277, 399, 629, 706
MabI	ACCWGGT	1 cut(s)	901
MaeI	CTAG	2 cut(s)	242, 527
MalI	GATC	3 cut(s)	189, 580, 593
MboI	GATC	3 cut(s)	187, 578, 591
MboII	GAAGA	2 cut(s)	269, 334
MfeI	CAATTG	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	6 cut(s)	228, 269, 346, 426, 656, 817
MnlI	CCTC	8 cut(s)	131, 171, 212, 361, 523, 569, 886, 910
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	4 cut(s)	144, 456, 681, 1021
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	378, 477, 903
MunI	CAATTG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	3 cut(s)	378, 477, 903
MwoI	GCNNNNNNNGC	4 cut(s)	209, 409, 530, 566
NdeII	GATC	3 cut(s)	187, 578, 591
NlaIII	CATG	4 cut(s)	303, 547, 937, 1000
NlaIV	GGNNCC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	1000
NspV	TTCGAA	1 cut(s)	250
OliI	CACNNNNGTG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	543
PceI	AGGCCT	1 cut(s)	66
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	728, 946
PflFI	GACNNNGTC	2 cut(s)	338, 629
PkrI	GCNGC	7 cut(s)	7, 43, 130, 202, 721, 742, 972
PpuMI	RGGWCCY	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	376, 475, 901
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	3 cut(s)	376, 475, 901
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	381
PspPPI	RGGWCCY	1 cut(s)	381
PstNI	CAGNNNCTG	3 cut(s)	290, 482, 629
PsyI	GACNNNGTC	2 cut(s)	338, 629
RsaI	GTAC	2 cut(s)	152, 923
RsaNI	GTAC	2 cut(s)	151, 922
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	4 cut(s)	144, 456, 681, 1021
SatI	GCNGC	7 cut(s)	6, 42, 129, 201, 720, 741, 971
Sau3AI	GATC	3 cut(s)	187, 578, 591
Sau96I	GGNCC	1 cut(s)	381
ScrFI	CCNGG	3 cut(s)	378, 477, 903
SduI	GDGCHC	1 cut(s)	324
SexAI	ACCWGGT	1 cut(s)	901
SfaNI	GCATC	4 cut(s)	277, 399, 629, 706
SfcI	CTRYAG	2 cut(s)	132, 419
SfuI	TTCGAA	1 cut(s)	250
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	470
Sse9I	AATT	6 cut(s)	228, 269, 346, 426, 656, 817
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	4 cut(s)	201, 663, 720, 759
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	2 cut(s)	242, 527
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	376, 475, 901
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	164, 469
TaqI	TCGA	4 cut(s)	207, 250, 432, 771
TasI	AATT	6 cut(s)	228, 269, 346, 426, 656, 817
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	2 cut(s)	203, 722
TfiI	GAWTC	2 cut(s)	728, 946
Tru1I	TTAA	4 cut(s)	144, 456, 681, 1021
Tru9I	TTAA	4 cut(s)	144, 456, 681, 1021
TscAI	CASTG	4 cut(s)	15, 219, 544, 681
TseI	GCWGC	5 cut(s)	5, 41, 128, 740, 970
TspDTI	ATGAA	2 cut(s)	486, 977
TspRI	CASTG	4 cut(s)	15, 219, 544, 681
Tth111I	GACNNNGTC	2 cut(s)	338, 629
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	2 cut(s)	426, 817
XceI	RCATGY	1 cut(s)	1000
XspI	CTAG	2 cut(s)	242, 527
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.