Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7351563 .. 7352409

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGGCTTTTTGATCCAAACACAGCAGCCCTTCAGGCACTGAAAGGGAGCGGAATCAGTGTCATACTTGGCATTCAAAACCAAGACTTACCCGCACTGGCAGCAAGTCAAGAAGCTGTGAACGCATGGTTCACCACCAATGTTGAGCCTTACCTTGATGGTATTGAACTCAGTTATATTGCTGTTGGCAATGAGGTTATTCCCGGGCCCTTATGCAACTACGTTTTTCCTGTAATGAGGTTTTTACGGACTATGCTTGATGGCAGAGAGCTGAGTGGGATTAAGGTGACCACAGTTGTTCCAGGAACTGCCTTAGGATCTTCATACCCGCCTTCAAGTGGTGTATTCAGAGCGGAGGCTGTTGAAATCGCCAATGTTCACTTGGACTATGCTGTATTCACTACTAAAACCTCGGTGATTCAAGATGGACCACTCGGCTACTACAACCTGTTGGATGCCATAGTGGATTCGTTTTACACGGCAATGGAGAAAGTAGGCAGCCCTAATGTCACGGTTGTGGTGTCTGAAAGTGGTTGGCCGTCTGCTGGGAGCGGACAGTTCACCACCCCAGAACTTGAAGGGACATATAACCGGAATTTCATCAAACACATCAGTTCAAGGGTAGGAACACCAAAAAGACCTGATCAATTCATTGAAGGATACATCTTTGCCATGTTCAATGAGAATCTGAAACCTGAGGGCGAGGAGCAGCATTTTGGTCTTTTTTATCCTAACATGGAACCTGTTTATCCTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

253

Amino Acids

27.65

Weight (kDa)

4.67

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 121	1.3e-23	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	125 - 252	7.7e-39	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	51, 353, 552
AciI	CCGC	5 cut(s)	51, 93, 329, 353, 552
AclWI	GGATC	2 cut(s)	8, 325
AcoI	YGGCCR	1 cut(s)	536
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	338, 545
AgsI	TTSAA	9 cut(s)	77, 167, 336, 365, 422, 578, 618, 656, 679
AjnI	CCWGG	1 cut(s)	301
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	2 cut(s)	116, 271
AluI	AGCT	2 cut(s)	116, 271
AlwI	GGATC	2 cut(s)	8, 325
AlwNI	CAGNNNCTG	2 cut(s)	40, 308
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	206, 536
ApaI	GGGCCC	1 cut(s)	210
ApeKI	GCWGC	4 cut(s)	26, 101, 498, 709
ApoI	RAATTY	1 cut(s)	595
AspS9I	GGNCC	3 cut(s)	206, 207, 428
AsuC2I	CCSGG	2 cut(s)	204, 205
AsuHPI	GGTGA	4 cut(s)	124, 298, 427, 553
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	2 cut(s)	313, 696
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	38, 113, 510, 721
BccI	CCATC	3 cut(s)	152, 254, 419
BceAI	ACGGC	2 cut(s)	495, 523
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	653
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	204, 205
BfuI	GTATCC	1 cut(s)	653
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	4 cut(s)	27, 102, 499, 710
BlsI	GCNGC	4 cut(s)	28, 103, 500, 711
Bme1390I	CCNGG	3 cut(s)	204, 205, 303
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	206, 207, 428
BmiI	GGNNCC	2 cut(s)	208, 741
BmrFI	CCNGG	3 cut(s)	204, 205, 303
BmsI	GCATC	1 cut(s)	445
BpuMI	CCSGG	2 cut(s)	204, 205
BsaJI	CCNNGG	2 cut(s)	203, 411
BsaWI	WCCGGW	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 545
Bse1I	ACTGG	1 cut(s)	102
Bse21I	CCTNAGG	2 cut(s)	313, 696
Bse3DI	GCAATG	2 cut(s)	196, 489
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	203, 411
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	338, 545
BseMI	GCAATG	2 cut(s)	196, 489
BseMII	CTCAG	3 cut(s)	184, 263, 687
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	719
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	4 cut(s)	38, 113, 510, 721
BseYI	CCCAGC	1 cut(s)	545
BshFI	GGCC	2 cut(s)	208, 538
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	204, 592
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	338, 545
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	208, 538
BsoBI	CYCGRG	1 cut(s)	203
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	13, 317, 643
BspACI	CCGC	5 cut(s)	51, 93, 329, 353, 552
BspANI	GGCC	2 cut(s)	208, 538
BspCNI	CTCAG	3 cut(s)	183, 264, 688
BspLI	GGNNCC	2 cut(s)	208, 741
BspPI	GGATC	2 cut(s)	8, 325
BsrBI	CCGCTC	3 cut(s)	51, 353, 552
BsrDI	GCAATG	2 cut(s)	196, 489
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	203, 411
BssMI	GATC	3 cut(s)	13, 317, 643
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	295, 514, 558
BstDEI	CTNAG	4 cut(s)	170, 272, 313, 696
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	3 cut(s)	16, 320, 646
BstMBI	GATC	3 cut(s)	13, 317, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 101, 122
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	202, 203, 301
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	38, 113, 510, 721
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
Bsu36I	CCTNAGG	2 cut(s)	313, 696
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	208, 538
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	3 cut(s)	38, 64, 95
CaiI	CAGNNNCTG	2 cut(s)	40, 308
Cfr13I	GGNCC	3 cut(s)	206, 207, 428
Cfr9I	CCCGGG	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	3 cut(s)	126, 673, 736
DdeI	CTNAG	4 cut(s)	170, 272, 313, 696
DpnI	GATC	3 cut(s)	15, 319, 645
DpnII	GATC	3 cut(s)	13, 317, 643
EaeI	YGGCCR	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	17
Eco81I	CCTNAGG	2 cut(s)	313, 696
Eco88I	CYCGRG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	207
EcoO65I	GGTNACC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	3 cut(s)	129, 676, 739
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	3 cut(s)	125, 672, 735
FauI	CCCGC	2 cut(s)	100, 336
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	27, 102, 499, 710
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	4 cut(s)	27, 102, 499, 710
GluI	GCNGC	4 cut(s)	27, 102, 499, 710
GsaI	CCCAGC	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	208, 538
HapII	CCGG	2 cut(s)	204, 592
Hin1II	CATG	3 cut(s)	129, 676, 739
HinfI	GANTC	4 cut(s)	54, 418, 467, 685
HpaII	CCGG	2 cut(s)	204, 592
HphI	GGTGA	4 cut(s)	124, 298, 427, 553
Hpy166II	GTNNAC	4 cut(s)	121, 132, 379, 561
Hpy188I	TCNGA	3 cut(s)	350, 526, 690
Hpy188III	TCNNGA	2 cut(s)	110, 422
Hpy8I	GTNNAC	4 cut(s)	121, 132, 379, 561
HpyAV	CCTTC	4 cut(s)	41, 342, 572, 650
HpyCH4III	ACNGT	3 cut(s)	295, 514, 558
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 101, 122
HpyF3I	CTNAG	4 cut(s)	170, 272, 313, 696
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	129, 676, 739
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	13, 317, 643
LmnI	GCTCC	3 cut(s)	48, 549, 706
Lsp1109I	GCAGC	4 cut(s)	38, 113, 510, 721
LweI	GCATC	1 cut(s)	445
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	286, 508
MalI	GATC	3 cut(s)	15, 319, 645
MbiI	CCGCTC	3 cut(s)	51, 353, 552
MboI	GATC	3 cut(s)	13, 317, 643
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	595, 647
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	6 cut(s)	187, 231, 349, 421, 691, 697
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	482, 515
MspI	CCGG	2 cut(s)	204, 592
MspR9I	CCNGG	3 cut(s)	204, 205, 303
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	35, 101, 122
NciI	CCSGG	2 cut(s)	204, 205
NdeII	GATC	3 cut(s)	13, 317, 643
NlaIII	CATG	3 cut(s)	129, 676, 739
NlaIV	GGNNCC	2 cut(s)	208, 741
NmeAIII	GCCGAG	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	286, 508
OliI	CACNNNNGTG	1 cut(s)	515
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	54, 418, 467, 685
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	28, 103, 500, 711
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	208, 741
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	3 cut(s)	206, 207, 428
PstNI	CAGNNNCTG	2 cut(s)	40, 308
PsuI	RGATCY	1 cut(s)	317
RseI	CAYNNNNRTG	2 cut(s)	482, 515
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	27, 102, 499, 710
Sau3AI	GATC	3 cut(s)	13, 317, 643
Sau96I	GGNCC	3 cut(s)	206, 207, 428
ScrFI	CCNGG	3 cut(s)	204, 205, 303
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	445
SinI	GGWCC	1 cut(s)	428
SmaI	CCCGGG	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	482, 515
Sse9I	AATT	2 cut(s)	595, 647
SsiI	CCGC	5 cut(s)	51, 93, 329, 353, 552
StyD4I	CCNGG	3 cut(s)	202, 203, 301
TaaI	ACNGT	3 cut(s)	295, 514, 558
TaiI	ACGT	1 cut(s)	225
TasI	AATT	2 cut(s)	595, 647
TfiI	GAWTC	4 cut(s)	54, 418, 467, 685
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	3 cut(s)	45, 64, 102
TseFI	GTSAC	2 cut(s)	286, 508
TseI	GCWGC	4 cut(s)	26, 101, 498, 709
Tsp45I	GTSAC	2 cut(s)	286, 508
TspDTI	ATGAA	3 cut(s)	312, 589, 640
TspGWI	ACGGA	1 cut(s)	262
TspMI	CCCGGG	1 cut(s)	203
TspRI	CASTG	3 cut(s)	45, 64, 102
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmaI	CCCGGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.