Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7276315 .. 7288302

Gene Structure 11988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG093000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTCGATTCTTTCGTGGTAGCGATGGAGAAAGCAGGTGGCGGAAATGTCAAAGTTGCGGTGGCTGAAAGTGGTTGGCCTTCTGATGGCAGCGGAAATATGAGCACTCCACAACTCGCAGCCACATATAACAAGAATTTCATGAATCATATCCTTAAAAAGGAAGGGACACCAAGAAGACCTGGTGAAAACATTGAAGGGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAATGGGGAGGACGAAAAACACTATAGTCTTTTTTATCCCAACATGCAACCTGTTTATGATCGCTGCCTCTATATGGCGGGGAGGCTAATAGTGGCTTCGGCCACTCAGCTCCAAGACGTCTTCGTCCCGCACCTCTTGTTCCTTCATATCGACTTCTCCTACCTCTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

5.74

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 99	3.3e-31	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
AasI	GACNNNNNNGTC	1 cut(s)	359
AatII	GACGTC	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	26
AciI	CCGC	5 cut(s)	42, 59, 93, 314, 365
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	354
AfiI	CCNNNNNNNGG	3 cut(s)	86, 160, 310
AgsI	TTSAA	2 cut(s)	197, 220
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw21I	GWGCWC	1 cut(s)	107
AoxI	GGCC	2 cut(s)	77, 336
ApeKI	GCWGC	3 cut(s)	90, 119, 300
ApoI	RAATTY	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	184, 349
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	3 cut(s)	102, 131, 287
BccI	CCATC	2 cut(s)	19, 80
BciT130I	CCWGG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	91, 120, 301
BlsI	GCNGC	3 cut(s)	92, 121, 302
Bme1390I	CCNGG	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	183
BpiI	GAAGAC	2 cut(s)	184, 349
BsaHI	GRCGYC	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 160, 310
BseBI	CCWGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	3 cut(s)	86, 160, 310
BseMII	CTCAG	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	102, 131, 287
BshFI	GGCC	2 cut(s)	79, 338
BsiHKAI	GWGCWC	1 cut(s)	107
BslFI	GGGAC	2 cut(s)	181, 347
BslI	CCNNNNNNNGG	3 cut(s)	86, 160, 310
BsmFI	GGGAC	2 cut(s)	181, 347
BsnI	GGCC	2 cut(s)	79, 338
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	5 cut(s)	42, 59, 93, 314, 365
BspANI	GGCC	2 cut(s)	79, 338
BspCNI	CTCAG	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	26
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	342
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	3 cut(s)	102, 131, 287
BstV2I	GAAGAC	2 cut(s)	184, 349
BsuRI	GGCC	2 cut(s)	79, 338
BtgZI	GCGATG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	26
CciI	TCATGA	1 cut(s)	141
CsiI	ACCWGGT	1 cut(s)	181
CviAII	CATG	3 cut(s)	142, 214, 280
CviJI	RGCY	7 cut(s)	65, 79, 122, 322, 332, 338, 346
CviKI_1	RGCY	7 cut(s)	65, 79, 122, 322, 332, 338, 346
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	145, 217, 283
FaqI	GGGAC	2 cut(s)	181, 347
FatI	CATG	3 cut(s)	141, 213, 279
FauI	CCCGC	2 cut(s)	307, 372
Fnu4HI	GCNGC	3 cut(s)	91, 120, 301
Fsp4HI	GCNGC	3 cut(s)	91, 120, 301
GluI	GCNGC	3 cut(s)	91, 120, 301
HaeIII	GGCC	2 cut(s)	79, 338
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	145, 217, 283
HinfI	GANTC	2 cut(s)	8, 145
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	90, 158, 191, 389
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	145, 217, 283
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	351
LpnPI	CCDG	5 cut(s)	21, 168, 195, 242, 300
Lsp1109I	GCAGC	3 cut(s)	102, 131, 287
MabI	ACCWGGT	1 cut(s)	181
MaeII	ACGT	1 cut(s)	354
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	189, 349, 394
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	5 cut(s)	238, 312, 314, 380, 410
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	3 cut(s)	145, 217, 283
NspI	RCATGY	1 cut(s)	283
PagI	TCATGA	1 cut(s)	141
PaqCI	CACCTGC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	8, 145
PkrI	GCNGC	3 cut(s)	92, 121, 302
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	91, 120, 301
Sau3AI	GATC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	8 cut(s)	40, 184, 238, 289, 348, 357, 372, 402
SexAI	ACCWGGT	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	42, 59, 93, 314, 365
StyD4I	CCNGG	1 cut(s)	181
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	6, 387
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	8, 145
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	3 cut(s)	90, 119, 300
TspDTI	ATGAA	4 cut(s)	130, 158, 371, 394
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.