Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

84946001 .. 84946865

Gene Structure 865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAAAGATAACCAACTCCAATTTCATTGATTTATCGGTCGCCATTATCTGTGTTGTAGCAACCCTTAACAACCATATAGGCCTTGTGGGAGGTTCAAAAATAGGCGTTTGCTATGGAATGCTGAGAAGTGACCTCCCTGCAACAACAGAAGTTGTCAATCTCTACAAACAATACCACATTGGCAAAATGAGGCTCTTCGATCCTAACCAAGCAGCGCTTGAAGCTCTAAGAGGGAGCGAAATTAGTGTCACAGTTGGCATTCCGAAAGAAGACTTGGCAGATTTAGCAAGAAGCCAGGATGCTGTGAACACATGGTTCAACAACAATATAGCTCCTTATCTACATGACATTATCTTCGACTACATAGCCGTTGGTAACGAGGTCATTCCCGGTTCATTGGGCAACTATGTCTTGCCTGTAATGGAGTCGTTACAAAACATCCTTAAAGACAAAGGGTATGTGACAAAGGTGACCACAGTTGTGCCATCAACTGCCCTAGGATCTTCATACCCGCCCTCTAGTGGGGAATTCACACAAAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

182

Amino Acids

19.71

Weight (kDa)

5.29

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	35 - 179	6.2e-33	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	2 cut(s)	197, 511
AcsI	RAATTY	1 cut(s)	530
AfeI	AGCGCT	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	524, 525
AgsI	TTSAA	3 cut(s)	99, 224, 322
AjnI	CCWGG	1 cut(s)	297
AjuI	GAANNNNNNNTTGG	4 cut(s)	8, 40, 260, 292
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	2 cut(s)	227, 335
AluI	AGCT	2 cut(s)	227, 335
AlwI	GGATC	2 cut(s)	197, 511
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	530
ArsI	GACNNNNNNTTYG	4 cut(s)	234, 266, 341, 373
AspA2I	CCTAGG	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	484
AvrII	CCTAGG	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	496
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	1 cut(s)	393
BfaI	CTAG	3 cut(s)	500, 522, 547
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	1 cut(s)	216
BlnI	CCTAGG	1 cut(s)	499
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	2 cut(s)	299, 393
BmrFI	CCNGG	2 cut(s)	299, 393
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 525
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	2 cut(s)	307, 441
BseLI	CCNNNNNNNGG	2 cut(s)	524, 525
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	524, 525
BsmI	GAATGC	2 cut(s)	126, 261
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	202, 503
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	117
BspPI	GGATC	2 cut(s)	197, 511
BspQI	GCTCTTC	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	202, 503
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	2 cut(s)	256, 481
Bst6I	CTCTTC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	125, 230
BstEII	GGTNACC	1 cut(s)	472
BstF5I	GGATG	2 cut(s)	307, 441
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	205, 506
BstMBI	GATC	2 cut(s)	202, 503
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 287
BstNI	CCWGG	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	472
BstSCI	CCNGG	2 cut(s)	297, 391
BstV1I	GCAGC	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	307, 441
CfoI	GCGC	1 cut(s)	220
CviAII	CATG	2 cut(s)	315, 347
CviJI	RGCY	7 cut(s)	84, 196, 227, 297, 335, 371, 546
CviKI_1	RGCY	7 cut(s)	84, 196, 227, 297, 335, 371, 546
DdeI	CTNAG	2 cut(s)	125, 230
DpnI	GATC	2 cut(s)	204, 505
DpnII	GATC	2 cut(s)	202, 503
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	499
Eco147I	AGGCCT	1 cut(s)	84
Eco47III	AGCGCT	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	472
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	2 cut(s)	318, 350
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	2 cut(s)	314, 346
FauI	CCCGC	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	314, 428
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	3 cut(s)	500, 522, 547
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	318, 350
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	267
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	256, 481
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 287
HpyF3I	CTNAG	2 cut(s)	125, 230
Hsp92II	CATG	2 cut(s)	318, 350
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	202, 503
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	237, 340
LpnPI	CCDG	5 cut(s)	153, 284, 311, 406, 432
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	3 cut(s)	500, 522, 547
MaeIII	GTNAC	6 cut(s)	131, 250, 377, 432, 463, 472
MalI	GATC	2 cut(s)	204, 505
MboI	GATC	2 cut(s)	202, 503
MboII	GAAGA	4 cut(s)	190, 284, 349, 498
MflI	RGATCY	1 cut(s)	503
MluCI	AATT	3 cut(s)	22, 243, 530
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	7 cut(s)	86, 146, 186, 227, 376, 529, 536
MseI	TTAA	2 cut(s)	69, 447
MslI	CAYNNNNRTG	1 cut(s)	482
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	299, 393
Mva1269I	GAATGC	2 cut(s)	126, 261
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	224, 287
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	2 cut(s)	202, 503
NlaIII	CATG	2 cut(s)	318, 350
NmuCI	GTSAC	4 cut(s)	131, 250, 463, 472
OliI	CACNNNNGTG	1 cut(s)	482
PceI	AGGCCT	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	203
PctI	GAATGC	2 cut(s)	126, 261
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	297
PspEI	GGTNACC	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	69, 447
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	202, 503
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	299, 393
SetI	ASST	6 cut(s)	97, 138, 229, 337, 387, 474
SfaNI	GCATC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	22, 243, 530
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	3 cut(s)	500, 522, 547
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	297, 391
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	256, 481
TaqI	TCGA	2 cut(s)	201, 360
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	22, 243, 530
Tru1I	TTAA	2 cut(s)	69, 447
Tru9I	TTAA	2 cut(s)	69, 447
TseFI	GTSAC	4 cut(s)	131, 250, 463, 472
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	4 cut(s)	131, 250, 463, 472
TspDTI	ATGAA	3 cut(s)	16, 387, 498
XapI	RAATTY	1 cut(s)	530
XmaJI	CCTAGG	1 cut(s)	499
XspI	CTAG	3 cut(s)	500, 522, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.