Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006422.1

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

2891 .. 3910

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006422.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggcagtatcgtactggattgcaatcattctatcacttttagcaacaattgacaaccatgtatttctactggaagcttcagacgtaggagtttgctatggaacgttagggaatgacctccctgcagcaacagaagttgtcaaactctacaagaaacatagtatcaccaaaatgaggctttttgatccaaacacagcagcccttcaggcactgaaagggagcggaatcagtgttatacttggcattcaaaaccaatacttacccgcactggcagcaagtcaagaagctgtgaacgcatggttcaccaccaatgttgagccttaccttgatggtattgaactcagttatattgctgttggcaatgaggttattcccgggcccttaggcaactacatttttcctgtaatgaggtttttacggactatgcttgatggcagagagctgagtgggattaaggtgaccacagttgttccaggaactaccttaggatcttcatacccgccttcaagtggtgtattcgcagcggaggctgttgaagtcatgaccagcattgttcaatttttagcgtcaaccaattcatctcttatgatcaatgcgtacccttactttgcctacaagtcagaccctgccaatgttcacttggactatgctctattcactactaaaacctcggtgattcaagatggaccactcggctactacaacctgttggatgccatagtggattcgttttacacggcaatggagaaagtaggcagccctaatgtcacggttgtggtgtctgaaagtggttggccttctgctgggagcggacagttcaccaccccagaacttgcagggacatataacaggaatttcatcaaacacatcagttcaagggtaggaacaccaaaaagacctgatcaattcattgaaggatacgtctttgccatgttcaatgagaatcagaaacctgagggtgaggagcagcattttggtctttttaatcctaacatggaacctgtttatcctgtgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

339

Amino Acids

36.94

Weight (kDa)

4.89

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	222, 810
AciI	CCGC	5 cut(s)	222, 264, 500, 524, 810
AclI	AACGTT	1 cut(s)	104
AclWI	GGATC	2 cut(s)	179, 496
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	2 cut(s)	63, 188
AfaI	GTAC	2 cut(s)	14, 599
AfiI	CCNNNNNNNGG	3 cut(s)	174, 509, 803
AgsI	TTSAA	9 cut(s)	248, 338, 507, 536, 557, 680, 876, 914, 937
AjnI	CCWGG	1 cut(s)	472
AleI	CACNNNNGTG	1 cut(s)	773
AluBI	AGCT	3 cut(s)	77, 287, 442
AluI	AGCT	3 cut(s)	77, 287, 442
AlwI	GGATC	2 cut(s)	179, 496
AlwNI	CAGNNNCTG	2 cut(s)	211, 626
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	377, 794
ApaI	GGGCCC	1 cut(s)	381
ApeKI	GCWGC	6 cut(s)	125, 197, 272, 521, 756, 967
ApoI	RAATTY	1 cut(s)	853
AspS9I	GGNCC	3 cut(s)	377, 378, 686
AsuC2I	CCSGG	2 cut(s)	375, 376
AsuHPI	GGTGA	6 cut(s)	157, 295, 469, 685, 811, 971
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	686
AxyI	CCTNAGG	3 cut(s)	382, 484, 954
BaeGI	GKGCMC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	381
BbvI	GCAGC	6 cut(s)	137, 209, 284, 533, 768, 979
BccI	CCATC	3 cut(s)	323, 425, 677
BceAI	ACGGC	1 cut(s)	753
BciT130I	CCWGG	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	911
BclI	TGATCA	2 cut(s)	588, 901
BcnI	CCSGG	2 cut(s)	375, 376
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	911
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	6 cut(s)	126, 198, 273, 522, 757, 968
BlsI	GCNGC	6 cut(s)	127, 199, 274, 523, 758, 969
Bme1390I	CCNGG	3 cut(s)	375, 376, 474
Bme18I	GGWCC	1 cut(s)	686
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	3 cut(s)	377, 378, 686
BmiI	GGNNCC	2 cut(s)	379, 999
BmrFI	CCNGG	3 cut(s)	375, 376, 474
BmsI	GCATC	1 cut(s)	703
BpuMI	CCSGG	2 cut(s)	375, 376
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	374, 669
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 509, 803
Bse1I	ACTGG	3 cut(s)	20, 75, 273
Bse21I	CCTNAGG	3 cut(s)	382, 484, 954
Bse3DI	GCAATG	2 cut(s)	367, 747
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	374, 669
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	3 cut(s)	174, 509, 803
BseMI	GCAATG	2 cut(s)	367, 747
BseMII	CTCAG	3 cut(s)	355, 434, 945
BseNI	ACTGG	3 cut(s)	20, 75, 273
BseRI	GAGGAG	1 cut(s)	977
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	6 cut(s)	137, 209, 284, 533, 768, 979
BseYI	CCCAGC	1 cut(s)	803
BshFI	GGCC	2 cut(s)	379, 796
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	3 cut(s)	174, 509, 803
BsmFI	GGGAC	1 cut(s)	853
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	379, 796
BsoBI	CYCGRG	1 cut(s)	374
Bsp120I	GGGCCC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	184, 488, 588, 901
BspACI	CCGC	5 cut(s)	222, 264, 500, 524, 810
BspANI	GGCC	2 cut(s)	379, 796
BspCNI	CTCAG	3 cut(s)	354, 435, 946
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	379, 999
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	2 cut(s)	179, 496
BsrBI	CCGCTC	2 cut(s)	222, 810
BsrDI	GCAATG	2 cut(s)	367, 747
BsrI	ACTGG	3 cut(s)	20, 75, 273
BssECI	CCNNGG	2 cut(s)	374, 669
BssMI	GATC	4 cut(s)	184, 488, 588, 901
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	466, 772, 816
BstDEI	CTNAG	5 cut(s)	341, 382, 443, 484, 954
BstEII	GGTNACC	1 cut(s)	457
BstF5I	GGATG	1 cut(s)	718
BstKTI	GATC	4 cut(s)	187, 491, 591, 904
BstMBI	GATC	4 cut(s)	184, 488, 588, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 527
BstNI	CCWGG	1 cut(s)	474
BstPI	GGTNACC	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	373, 374, 472
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	6 cut(s)	137, 209, 284, 533, 768, 979
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
Bsu36I	CCTNAGG	3 cut(s)	382, 484, 954
BsuI	GTATCC	1 cut(s)	911
BsuRI	GGCC	2 cut(s)	379, 796
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	3 cut(s)	209, 235, 266
CaiI	CAGNNNCTG	2 cut(s)	211, 626
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	3 cut(s)	377, 378, 686
Cfr9I	CCCGGG	1 cut(s)	374
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	13, 598
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	5 cut(s)	59, 297, 541, 931, 994
CviQI	GTAC	2 cut(s)	13, 598
DdeI	CTNAG	5 cut(s)	341, 382, 443, 484, 954
DpnI	GATC	4 cut(s)	186, 490, 590, 903
DpnII	GATC	4 cut(s)	184, 488, 588, 901
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	2 cut(s)	63, 188
Eco81I	CCTNAGG	3 cut(s)	382, 484, 954
Eco88I	CYCGRG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	378
EcoO65I	GGTNACC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	381
FaeI	CATG	5 cut(s)	62, 300, 544, 934, 997
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	5 cut(s)	58, 296, 540, 930, 993
FauI	CCCGC	2 cut(s)	271, 507
FbaI	TGATCA	2 cut(s)	588, 901
Fnu4HI	GCNGC	6 cut(s)	126, 198, 273, 522, 757, 968
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	6 cut(s)	126, 198, 273, 522, 757, 968
GluI	GCNGC	6 cut(s)	126, 198, 273, 522, 757, 968
GsaI	CCCAGC	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	379, 796
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	555
Hin1II	CATG	5 cut(s)	62, 300, 544, 934, 997
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	4 cut(s)	225, 676, 725, 943
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	6 cut(s)	157, 295, 469, 685, 811, 971
Hpy166II	GTNNAC	5 cut(s)	292, 303, 570, 637, 819
Hpy188I	TCNGA	4 cut(s)	82, 622, 784, 948
Hpy188III	TCNNGA	3 cut(s)	281, 541, 680
Hpy8I	GTNNAC	5 cut(s)	292, 303, 570, 637, 819
HpyAV	CCTTC	4 cut(s)	212, 513, 807, 908
HpyCH4III	ACNGT	3 cut(s)	466, 772, 816
HpyCH4IV	ACGT	3 cut(s)	84, 104, 921
HpyCH4V	TGCA	3 cut(s)	23, 125, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 527
HpyF3I	CTNAG	5 cut(s)	341, 382, 443, 484, 954
HpySE526I	ACGT	3 cut(s)	84, 104, 921
Hsp92II	CATG	5 cut(s)	62, 300, 544, 934, 997
Ksp22I	TGATCA	2 cut(s)	588, 901
Kzo9I	GATC	4 cut(s)	184, 488, 588, 901
LmnI	GCTCC	3 cut(s)	219, 807, 964
Lsp1109I	GCAGC	6 cut(s)	137, 209, 284, 533, 768, 979
LweI	GCATC	1 cut(s)	703
MaeII	ACGT	3 cut(s)	84, 104, 921
MaeIII	GTNAC	2 cut(s)	457, 766
MalI	GATC	4 cut(s)	186, 490, 590, 903
MbiI	CCGCTC	2 cut(s)	222, 810
MboI	GATC	4 cut(s)	184, 488, 588, 901
MboII	GAAGA	1 cut(s)	483
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	5 cut(s)	48, 557, 574, 853, 905
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	8 cut(s)	128, 168, 358, 402, 520, 679, 949, 955
MseI	TTAA	2 cut(s)	453, 984
MslI	CAYNNNNRTG	3 cut(s)	170, 740, 773
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	3 cut(s)	375, 376, 474
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 527
NciI	CCSGG	2 cut(s)	375, 376
NdeII	GATC	4 cut(s)	184, 488, 588, 901
NlaIII	CATG	5 cut(s)	62, 300, 544, 934, 997
NlaIV	GGNNCC	2 cut(s)	379, 999
NmeAIII	GCCGAG	1 cut(s)	672
NmuCI	GTSAC	2 cut(s)	457, 766
OliI	CACNNNNGTG	1 cut(s)	773
PagI	TCATGA	1 cut(s)	540
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	4 cut(s)	225, 676, 725, 943
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	6 cut(s)	127, 199, 274, 523, 758, 969
Psp1406I	AACGTT	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	472
PspEI	GGTNACC	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	379, 999
PspOMI	GGGCCC	1 cut(s)	377
PspPI	GGNCC	3 cut(s)	377, 378, 686
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	2 cut(s)	211, 626
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	2 cut(s)	14, 599
RsaNI	GTAC	2 cut(s)	13, 598
RseI	CAYNNNNRTG	3 cut(s)	170, 740, 773
SaqAI	TTAA	2 cut(s)	453, 984
SatI	GCNGC	6 cut(s)	126, 198, 273, 522, 757, 968
Sau3AI	GATC	4 cut(s)	184, 488, 588, 901
Sau96I	GGNCC	3 cut(s)	377, 378, 686
ScrFI	CCNGG	3 cut(s)	375, 376, 474
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	686
SmaI	CCCGGG	1 cut(s)	376
SmiMI	CAYNNNNRTG	3 cut(s)	170, 740, 773
Sse9I	AATT	5 cut(s)	48, 557, 574, 853, 905
SsiI	CCGC	5 cut(s)	222, 264, 500, 524, 810
StyD4I	CCNGG	3 cut(s)	373, 374, 472
TaaI	ACNGT	3 cut(s)	466, 772, 816
TaiI	ACGT	3 cut(s)	87, 107, 924
TasI	AATT	5 cut(s)	48, 557, 574, 853, 905
TfiI	GAWTC	4 cut(s)	225, 676, 725, 943
Tru1I	TTAA	2 cut(s)	453, 984
Tru9I	TTAA	2 cut(s)	453, 984
TscAI	CASTG	3 cut(s)	216, 235, 273
TseFI	GTSAC	2 cut(s)	457, 766
TseI	GCWGC	6 cut(s)	125, 197, 272, 521, 756, 967
Tsp45I	GTSAC	2 cut(s)	457, 766
TspDTI	ATGAA	4 cut(s)	483, 567, 847, 898
TspGWI	ACGGA	1 cut(s)	433
TspMI	CCCGGG	1 cut(s)	374
TspRI	CASTG	3 cut(s)	216, 235, 273
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmaI	CCCGGG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.