Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7948016 .. 7949281

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG096500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTGTTGCCATACAGCTGGCTTCCACGTGCTCATCATAGCTGATCTCAGCTGGTACTATATAAATCCCCTACCAGCTTGCCGTGTGGGAGCTTTAGACATAGGTGTTTGCTATGGGACGCAGGGAAATGACCTTCCTGCAGCAACAGATGTTATCGATCTCTACAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACCTAACCATGCAGCGCTCGATGCCCTGAAAGGGAGTGGAATCGGTGTCACGATAGGCATTCCAAACGATGAGTTGGCGCATTTGGCAACAGGCCAAGCTGCTGTGGACATATGGTTCAACGACAATGTAGCTCCTTATATAAATGACGGTAACATCAATTACATCGCCGTCGGTAACGAGCCCGACCTTCCCGGGTCAGTAGGCATCAATAATATCACGCCGGTAATGAAGTTGTTTCACAACATAGTTAGTGACAAAGGGATTAAGGTGACCACAGTTGTGTCAACATTTATCCTAGGATCTTCATACCCACCTTCGAGTGGTGCATTCACATCAGAGGCTAGTAGTGTAATGTCCGGCATTTTTGAGTTTTTAGCATCAACCGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAAACCCTGGCAGTGTTCGCATAGACTATGCTCAATTCACTGCAACAGACACGGTGGTGCAAGACGGAGCATACAGCTACCACAATCTGTTTGATGCCATGGTCGATTCTTTCGTGGCAGCGATGGAGAAAGCAGGCGGCGGAAATGTCAAAGTTGCGGTGGCTGAAAGTGGTTGGCCTTCTGATGGCAGCGGAAATATCAGCACTCCACAACTCGCAGCCACATATAACAAGAATTTCATGAATCATATCCTTAAAAAGGAAGGGACACCAAGAAGACCTGGTGAAAACATTGAAGGGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAATGGGGAGGACGAAAAACACTATGGTCTTTTTTATTCCAACATGCAACCTGTAAACCTGTTTATGATGTATTTCCTTGAACAAAACCTTCTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

354

Amino Acids

38.34

Weight (kDa)

4.94

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 340	1.9e-87	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	768, 771, 788, 822
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	865
AcvI	CACGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	56
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	4 cut(s)	231, 521, 815, 889
AgsI	TTSAA	4 cut(s)	319, 926, 949, 1046
AjnI	CCWGG	2 cut(s)	637, 910
AleI	CACNNNNGTG	2 cut(s)	479, 686
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	8 cut(s)	17, 41, 51, 77, 92, 299, 332, 708
AluI	AGCT	8 cut(s)	17, 41, 51, 77, 92, 299, 332, 708
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	508
Ama87I	CYCGRG	1 cut(s)	392
Aor51HI	AGCGCT	1 cut(s)	216
AoxI	GGCC	2 cut(s)	292, 806
ApeKI	GCWGC	6 cut(s)	140, 212, 299, 749, 819, 848
ApoI	RAATTY	1 cut(s)	865
AspA2I	CCTAGG	1 cut(s)	496
AspLEI	GCGC	2 cut(s)	217, 280
AsuC2I	CCSGG	2 cut(s)	393, 394
AsuHPI	GGTGA	2 cut(s)	481, 926
AsuII	TTCGAA	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	392
AvrII	CCTAGG	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	913
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	6 cut(s)	152, 224, 286, 761, 831, 860
BccI	CCATC	2 cut(s)	748, 809
BceAI	ACGGC	3 cut(s)	66, 190, 353
BciT130I	CCWGG	2 cut(s)	639, 912
BciVI	GTATCC	1 cut(s)	621
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	2 cut(s)	393, 394
BfaI	CTAG	2 cut(s)	497, 543
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	621
BisI	GCNGC	7 cut(s)	141, 213, 300, 750, 769, 820, 849
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	7 cut(s)	142, 214, 301, 751, 770, 821, 850
Bme1390I	CCNGG	4 cut(s)	393, 394, 639, 912
BmeT110I	CYCGRG	1 cut(s)	392
BmrFI	CCNGG	4 cut(s)	393, 394, 639, 912
BmsI	GCATC	4 cut(s)	211, 414, 587, 715
BpiI	GAAGAC	1 cut(s)	913
Bpu14I	TTCGAA	1 cut(s)	198
BpuMI	CCSGG	2 cut(s)	393, 394
Bsa29I	ATCGAT	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	4 cut(s)	392, 496, 637, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	4 cut(s)	231, 521, 815, 889
Bse118I	RCCGGY	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	639, 912
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	4 cut(s)	392, 496, 637, 729
BseLI	CCNNNNNNNGG	4 cut(s)	231, 521, 815, 889
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	61
BseXI	GCAGC	6 cut(s)	152, 224, 286, 761, 831, 860
BshFI	GGCC	2 cut(s)	294, 808
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	393, 422, 558
BslFI	GGGAC	2 cut(s)	130, 910
BslI	CCNNNNNNNGG	4 cut(s)	231, 521, 815, 889
BsmFI	GGGAC	2 cut(s)	130, 910
BsmI	GAATGC	2 cut(s)	258, 527
BsnI	GGCC	2 cut(s)	294, 808
BsoBI	CYCGRG	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	33, 384
Bsp143I	GATC	4 cut(s)	43, 157, 500, 600
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	4 cut(s)	768, 771, 788, 822
BspANI	GGCC	2 cut(s)	294, 808
BspCNI	CTCAG	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	508
BspQI	GCTCTTC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	4 cut(s)	392, 496, 637, 729
BssMI	GATC	4 cut(s)	43, 157, 500, 600
BssT1I	CCWWGG	2 cut(s)	496, 729
Bst2UI	CCWGG	2 cut(s)	639, 912
Bst4CI	ACNGT	3 cut(s)	350, 478, 685
Bst6I	CTCTTC	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	19, 79, 766
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	729
BstEII	GGTNACC	1 cut(s)	469
BstENI	CCTNNNNNAGG	1 cut(s)	887
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 280
BstKTI	GATC	4 cut(s)	46, 160, 503, 603
BstMBI	GATC	4 cut(s)	43, 157, 500, 600
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 284, 648
BstNI	CCWGG	2 cut(s)	639, 912
BstNSI	RCATGY	1 cut(s)	1012
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	4 cut(s)	391, 392, 637, 910
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	6 cut(s)	152, 224, 286, 761, 831, 860
BstV2I	GAAGAC	1 cut(s)	913
BstX2I	RGATCY	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	500
Bsu15I	ATCGAT	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	294, 808
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	729
BtgZI	GCGATG	2 cut(s)	349, 767
BtsI	GCAGTG	2 cut(s)	649, 669
BtsIMutI	CAGTG	2 cut(s)	649, 669
Cac8I	GCNNGC	3 cut(s)	19, 79, 766
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	2 cut(s)	217, 280
Cfr10I	RCCGGY	1 cut(s)	421
Cfr9I	CCCGGG	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	1 cut(s)	127
CsiI	ACCWGGT	1 cut(s)	910
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	5 cut(s)	209, 730, 871, 943, 1009
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	45, 159, 502, 602
DpnII	GATC	4 cut(s)	43, 157, 500, 600
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	496, 729
Eco24I	GRGCYC	1 cut(s)	384
Eco47III	AGCGCT	1 cut(s)	216
Eco72I	CACGTG	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	469
EcoNI	CCTNNNNNAGG	1 cut(s)	887
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	637, 910
EcoT14I	CCWWGG	2 cut(s)	496, 729
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	496, 729
FaeI	CATG	5 cut(s)	212, 733, 874, 946, 1012
FaqI	GGGAC	2 cut(s)	130, 910
FatI	CATG	5 cut(s)	208, 729, 870, 942, 1008
FauNDI	CATATG	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	7 cut(s)	141, 213, 300, 750, 769, 820, 849
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	7 cut(s)	141, 213, 300, 750, 769, 820, 849
FspBI	CTAG	2 cut(s)	497, 543
GlaI	GCGC	2 cut(s)	216, 279
GluI	GCNGC	7 cut(s)	141, 213, 300, 750, 769, 820, 849
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	294, 808
HapII	CCGG	3 cut(s)	393, 422, 558
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	2 cut(s)	217, 280
Hin1II	CATG	5 cut(s)	212, 733, 874, 946, 1012
Hin6I	GCGC	2 cut(s)	215, 278
HinP1I	GCGC	2 cut(s)	215, 278
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	240, 587, 737, 874
HpaII	CCGG	3 cut(s)	393, 422, 558
HphI	GGTGA	2 cut(s)	481, 926
Hpy166II	GTNNAC	3 cut(s)	307, 486, 1021
Hpy188I	TCNGA	2 cut(s)	538, 814
Hpy188III	TCNNGA	3 cut(s)	250, 871, 1062
Hpy8I	GTNNAC	3 cut(s)	307, 486, 1021
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	7 cut(s)	143, 398, 525, 819, 887, 920, 1064
HpyCH4III	ACNGT	3 cut(s)	350, 478, 685
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	7 cut(s)	140, 182, 212, 527, 674, 691, 1012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 284, 648
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	212, 733, 874, 946, 1012
HspAI	GCGC	2 cut(s)	215, 278
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	43, 157, 500, 600
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	3 cut(s)	89, 337, 698
Lsp1109I	GCAGC	6 cut(s)	152, 224, 286, 761, 831, 860
LweI	GCATC	4 cut(s)	211, 414, 587, 715
MabI	ACCWGGT	1 cut(s)	910
MaeI	CTAG	2 cut(s)	497, 543
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	5 cut(s)	247, 350, 374, 452, 469
MalI	GATC	4 cut(s)	45, 159, 502, 602
MboI	GATC	4 cut(s)	43, 157, 500, 600
MboII	GAAGA	3 cut(s)	187, 495, 918
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	33, 384
MluCI	AATT	4 cut(s)	186, 358, 665, 865
MmeI	TCCRAC	1 cut(s)	1029
MnlI	CCTC	2 cut(s)	532, 967
MseI	TTAA	2 cut(s)	465, 885
MslI	CAYNNNNRTG	2 cut(s)	479, 686
MspA1I	CMGCKG	3 cut(s)	17, 51, 822
MspI	CCGG	3 cut(s)	393, 422, 558
MspR9I	CCNGG	4 cut(s)	393, 394, 639, 912
Mva1269I	GAATGC	2 cut(s)	258, 527
MvaI	CCWGG	2 cut(s)	639, 912
MwoI	GCNNNNNNNGC	3 cut(s)	221, 284, 648
NciI	CCSGG	2 cut(s)	393, 394
NcoI	CCATGG	1 cut(s)	729
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	4 cut(s)	43, 157, 500, 600
NlaIII	CATG	5 cut(s)	212, 733, 874, 946, 1012
NmuCI	GTSAC	3 cut(s)	247, 452, 469
NspI	RCATGY	1 cut(s)	1012
NspV	TTCGAA	1 cut(s)	198
OliI	CACNNNNGTG	2 cut(s)	479, 686
PagI	TCATGA	1 cut(s)	870
PciSI	GCTCTTC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	2 cut(s)	258, 527
PfeI	GAWTC	4 cut(s)	240, 587, 737, 874
PkrI	GCNGC	7 cut(s)	142, 214, 301, 751, 770, 821, 850
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	637, 910
PspCI	CACGTG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	469
PspGI	CCWGG	2 cut(s)	637, 910
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	500
PvuII	CAGCTG	2 cut(s)	17, 51
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	479, 686
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	465, 885
SatI	GCNGC	7 cut(s)	141, 213, 300, 750, 769, 820, 849
Sau3AI	GATC	4 cut(s)	43, 157, 500, 600
ScrFI	CCNGG	4 cut(s)	393, 394, 639, 912
SduI	GDGCHC	2 cut(s)	33, 384
SexAI	ACCWGGT	1 cut(s)	910
SfaNI	GCATC	4 cut(s)	211, 414, 587, 715
SfcI	CTRYAG	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	198
SmaI	CCCGGG	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	479, 686
Sse9I	AATT	4 cut(s)	186, 358, 665, 865
SsiI	CCGC	4 cut(s)	768, 771, 788, 822
SspMI	CTAG	2 cut(s)	497, 543
StyD4I	CCNGG	4 cut(s)	391, 392, 637, 910
StyI	CCWWGG	2 cut(s)	496, 729
TaaI	ACNGT	3 cut(s)	350, 478, 685
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	5 cut(s)	156, 198, 219, 518, 735
TasI	AATT	4 cut(s)	186, 358, 665, 865
TauI	GCSGC	1 cut(s)	771
TfiI	GAWTC	4 cut(s)	240, 587, 737, 874
Tru1I	TTAA	2 cut(s)	465, 885
Tru9I	TTAA	2 cut(s)	465, 885
TscAI	CASTG	2 cut(s)	649, 676
TseFI	GTSAC	3 cut(s)	247, 452, 469
TseI	GCWGC	6 cut(s)	140, 212, 299, 749, 819, 848
Tsp45I	GTSAC	3 cut(s)	247, 452, 469
TspDTI	ATGAA	4 cut(s)	443, 495, 859, 887
TspGWI	ACGGA	1 cut(s)	711
TspMI	CCCGGG	1 cut(s)	392
TspRI	CASTG	2 cut(s)	649, 676
XagI	CCTNNNNNAGG	1 cut(s)	887
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	1 cut(s)	1012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	965
XmaI	CCCGGG	1 cut(s)	392
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	2 cut(s)	497, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.