Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

4996453 .. 4997643

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAGGTTGTCCTCCGTTTAGGCTATATATAGTTTCGTATTATACTATTTCGGTCCTTTTGGACAGGATGCTAGCTCCACAGTTTTTGCTTTCTGTCCCATCTCTCATTAGTTTATTATGTACACTTATGAAGGTTTACATATATAACAGGCACTCGATCGGTTATCAGAAGGTGATGGCAGTTTTGCAATGGATTGCGCTCATGCTGTCGTTTCTAGCAGCGATTCAAGGTGTTGTGGATGGTTATTCGGTTGACATTGGCGTTAACTATGGATTGTTGGGGGATGACCTACCTAAACCTAGAGAAGTGGTTAAACTCTTGAAGGCGTATGGTGTTGGCAAGGTAAGGCTGTTCAATCCTGATCCAGATGTACTCTGGGCACTGAGGGGGCAAAACATTGATGTCATGGTAGGCGTTCCTAATGAAAACTTAAAAGCTTTGGCAGAAAGCCAAGGTGCTGTGAACAACTGGTTTGATAACAATATAGAGCCCTACCTAAATGACGTTAACATCTACTTCATCACCGTTGGCAACGAGGTTATTCCCGGTCCCTTAGGAAACTACGTTTGGCAAGTAATGCAGTATCTACAAAACATCCTCGACGAAAGGAGCTACCGTGGTATTAAAGTCTCCACTGTTATACCAGGGACTGCCTTAAAAACTTCATTTCCACCTTCAAAGGGTGAATTCAACGGACAGTCGAGCGGTGTCATGACTTCCATTTGTGGGTTTTTACTTTTTCGAGGATCGCCACTTATGATCAATGTGTATCCTTACTTTGCCTATGCATCAAACCCTACCAAAGCTCCCTTACAATATGCTCTATTTAATTCATCAACACCCGTACACGACGGGAACTTGAGCTATTACAGCCTGTTTGATGCCACTGTTGATGCTTTTATCTCAGCAATGGAGAGAGTCGGGGGAGCTGGTGTCGAGGTGGGGGTATCGGAGAGTGGCTGGCCTTCTGCCGGGAACGGAATTTTCACTAGTCCGGAGCTTGCTGGTACATATAACCGGAATTTCATGAAACGCGTAACCTCCCTGAAAGGGACACCAAAACGACCTGGTCATTACATCGAAGGCTTTATCTTTGCCCTGTTCAATGAGAATCAGAAACCAGCTGGTGTGGAGCAAAATTTCGGGCTGTTTTATCCTACCATGAAACCTGTTTACACTGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

397

Amino Acids

43.81

Weight (kDa)

6.83

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	87 - 395	1.6e-80	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	708
AccII	CGCG	1 cut(s)	1038
AccIII	TCCGGA	1 cut(s)	997
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	2 cut(s)	359, 757
AcsI	RAATTY	4 cut(s)	689, 984, 1024, 1141
AfaI	GTAC	4 cut(s)	124, 375, 849, 1012
AfiI	CCNNNNNNNGG	4 cut(s)	683, 729, 974, 1053
AflIII	ACRYGT	1 cut(s)	1036
AgsI	TTSAA	6 cut(s)	230, 325, 358, 681, 694, 1108
AhlI	ACTAGT	1 cut(s)	992
AjnI	CCWGG	2 cut(s)	646, 1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
AluBI	AGCT	8 cut(s)	77, 440, 615, 809, 867, 932, 1003, 1127
AluI	AGCT	8 cut(s)	77, 440, 615, 809, 867, 932, 1003, 1127
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	2 cut(s)	359, 757
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor13HI	TCCGGA	1 cut(s)	997
AoxI	GGCC	1 cut(s)	965
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	4 cut(s)	689, 984, 1024, 1141
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	55, 551
AsuC2I	CCSGG	2 cut(s)	549, 976
AsuHPI	GGTGA	3 cut(s)	187, 517, 698
AsuNHI	GCTAGC	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	55, 551
AxyI	CCTNAGG	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	109, 172, 236
BciT130I	CCWGG	2 cut(s)	648, 1071
BciVI	GTATCC	1 cut(s)	783
BclI	TGATCA	1 cut(s)	762
BcnI	CCSGG	2 cut(s)	549, 976
BcoDI	GTCTC	1 cut(s)	637
BcuI	ACTAGT	1 cut(s)	992
BfaI	CTAG	4 cut(s)	74, 218, 303, 993
BfuI	GTATCC	1 cut(s)	783
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	4 cut(s)	549, 648, 976, 1071
Bme18I	GGWCC	2 cut(s)	55, 551
BmgT120I	GGNCC	2 cut(s)	55, 551
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	4 cut(s)	549, 648, 976, 1071
BmsI	GCATC	4 cut(s)	60, 800, 874, 886
BmtI	GCTAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	883
BpuMI	CCSGG	2 cut(s)	549, 976
BsaJI	CCNNGG	3 cut(s)	454, 619, 647
BsaWI	WCCGGW	2 cut(s)	997, 1020
BsaXI	ACNNNNNCTCC	6 cut(s)	604, 634, 793, 823, 921, 951
Bsc4I	CCNNNNNNNGG	4 cut(s)	683, 729, 974, 1053
Bse1I	ACTGG	1 cut(s)	476
Bse21I	CCTNAGG	1 cut(s)	556
Bse3DI	GCAATG	2 cut(s)	197, 918
BseAI	TCCGGA	1 cut(s)	997
BseBI	CCWGG	2 cut(s)	648, 1071
BseDI	CCNNGG	3 cut(s)	454, 619, 647
BseGI	GGATG	4 cut(s)	75, 247, 292, 597
BseLI	CCNNNNNNNGG	4 cut(s)	683, 729, 974, 1053
BseMI	GCAATG	2 cut(s)	197, 918
BseMII	CTCAG	2 cut(s)	377, 921
BseNI	ACTGG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	1038
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	967
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	4 cut(s)	549, 975, 998, 1021
BslFI	GGGAC	4 cut(s)	83, 537, 664, 1069
BslI	CCNNNNNNNGG	4 cut(s)	683, 729, 974, 1053
BsmAI	GTCTC	1 cut(s)	637
BsmFI	GGGAC	4 cut(s)	83, 537, 664, 1069
BsnI	GGCC	1 cut(s)	967
Bsp1286I	GDGCHC	2 cut(s)	385, 495
Bsp13I	TCCGGA	1 cut(s)	997
Bsp1407I	TGTACA	1 cut(s)	122
Bsp143I	GATC	4 cut(s)	159, 364, 749, 762
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	1 cut(s)	967
BspCNI	CTCAG	2 cut(s)	378, 920
BspEI	TCCGGA	1 cut(s)	997
BspFNI	CGCG	1 cut(s)	1038
BspHI	TCATGA	2 cut(s)	714, 1029
BspLI	GGNNCC	1 cut(s)	553
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	359, 757
BsrBI	CCGCTC	1 cut(s)	708
BsrDI	GCAATG	2 cut(s)	197, 918
BsrGI	TGTACA	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	3 cut(s)	454, 619, 647
BssMI	GATC	4 cut(s)	159, 364, 749, 762
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	2 cut(s)	648, 1071
Bst4CI	ACNGT	7 cut(s)	84, 529, 620, 640, 702, 892, 1183
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstAUI	TGTACA	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	75, 965, 1005
BstDEI	CTNAG	3 cut(s)	386, 556, 907
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	4 cut(s)	75, 247, 292, 597
BstFNI	CGCG	1 cut(s)	1038
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	162, 367, 752, 765
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	4 cut(s)	159, 364, 749, 762
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	580, 873
BstNI	CCWGG	2 cut(s)	648, 1071
BstSCI	CCNGG	4 cut(s)	547, 646, 974, 1069
BstSLI	GKGCMC	1 cut(s)	385
BstUI	CGCG	1 cut(s)	1038
BstV1I	GCAGC	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	967
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	4 cut(s)	75, 247, 292, 597
BtsIMutI	CAGTG	4 cut(s)	383, 636, 888, 1179
Cac8I	GCNNGC	3 cut(s)	75, 965, 1005
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	2 cut(s)	714, 1029
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	55, 551
CsiI	ACCWGGT	1 cut(s)	1069
Csp6I	GTAC	4 cut(s)	123, 374, 848, 1011
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	5 cut(s)	205, 409, 715, 1030, 1165
CviQI	GTAC	4 cut(s)	123, 374, 848, 1011
DdeI	CTNAG	3 cut(s)	386, 556, 907
DpnI	GATC	4 cut(s)	161, 366, 751, 764
DpnII	GATC	4 cut(s)	159, 364, 749, 762
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	55, 551
Eco81I	CCTNAGG	1 cut(s)	556
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	646, 1069
EcoT14I	CCWWGG	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	793
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	5 cut(s)	208, 412, 718, 1033, 1168
FaqI	GGGAC	4 cut(s)	83, 537, 664, 1069
FatI	CATG	5 cut(s)	204, 408, 714, 1029, 1164
FbaI	TGATCA	1 cut(s)	762
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	4 cut(s)	82, 254, 299, 584
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	4 cut(s)	74, 218, 303, 993
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	967
HapII	CCGG	4 cut(s)	549, 975, 998, 1021
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	208, 412, 718, 1033, 1168
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	3 cut(s)	256, 268, 511
HindII	GTYRAC	3 cut(s)	256, 268, 511
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	226, 921, 1114
HpaI	GTTAAC	2 cut(s)	268, 511
HpaII	CCGG	4 cut(s)	549, 975, 998, 1021
HphI	GGTGA	3 cut(s)	187, 517, 698
Hpy166II	GTNNAC	8 cut(s)	125, 139, 256, 268, 466, 511, 850, 1177
Hpy188I	TCNGA	3 cut(s)	171, 955, 1119
Hpy188III	TCNNGA	6 cut(s)	322, 362, 368, 715, 998, 1030
Hpy8I	GTNNAC	8 cut(s)	125, 139, 256, 268, 466, 511, 850, 1177
Hpy99I	CGWCG	2 cut(s)	608, 857
HpyAV	CCTTC	6 cut(s)	127, 166, 319, 687, 978, 1079
HpyCH4III	ACNGT	7 cut(s)	84, 529, 620, 640, 702, 892, 1183
HpyCH4IV	ACGT	2 cut(s)	507, 567
HpyCH4V	TGCA	3 cut(s)	190, 583, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	580, 873
HpyF3I	CTNAG	3 cut(s)	386, 556, 907
HpySE526I	ACGT	2 cut(s)	507, 567
Hsp92II	CATG	5 cut(s)	208, 412, 718, 1033, 1168
HspAI	GCGC	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	997
Ksp22I	TGATCA	1 cut(s)	762
KspAI	GTTAAC	2 cut(s)	268, 511
Kzo9I	GATC	4 cut(s)	159, 364, 749, 762
LmnI	GCTCC	6 cut(s)	82, 612, 814, 929, 1000, 1135
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	4 cut(s)	60, 800, 874, 886
MabI	ACCWGGT	1 cut(s)	1069
MaeI	CTAG	4 cut(s)	74, 218, 303, 993
MaeII	ACGT	2 cut(s)	507, 567
MaeIII	GTNAC	1 cut(s)	1039
MalI	GATC	4 cut(s)	161, 366, 751, 764
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	4 cut(s)	159, 364, 749, 762
MhlI	GDGCHC	2 cut(s)	385, 495
MluCI	AATT	5 cut(s)	689, 832, 984, 1024, 1141
MluI	ACGCGT	1 cut(s)	1036
MlyI	GAGTC	1 cut(s)	930
MnlI	CCTC	7 cut(s)	24, 381, 532, 611, 740, 934, 1054
Mph1103I	ATGCAT	1 cut(s)	793
MroI	TCCGGA	1 cut(s)	997
MseI	TTAA	8 cut(s)	267, 315, 434, 510, 627, 659, 831, 1189
MspA1I	CMGCKG	1 cut(s)	1127
MspI	CCGG	4 cut(s)	549, 975, 998, 1021
MspR9I	CCNGG	4 cut(s)	549, 648, 976, 1071
MvaI	CCWGG	2 cut(s)	648, 1071
MvnI	CGCG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	2 cut(s)	580, 873
NciI	CCSGG	2 cut(s)	549, 976
NdeII	GATC	4 cut(s)	159, 364, 749, 762
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	5 cut(s)	208, 412, 718, 1033, 1168
NlaIV	GGNNCC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	793
PagI	TCATGA	2 cut(s)	714, 1029
PfeI	GAWTC	2 cut(s)	226, 1114
PflFI	GACNNNGTC	1 cut(s)	1071
PkrI	GCNGC	1 cut(s)	223
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	1 cut(s)	929
PpsI	GAGTC	1 cut(s)	929
Psp6I	CCWGG	2 cut(s)	646, 1069
PspGI	CCWGG	2 cut(s)	646, 1069
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	2 cut(s)	55, 551
PstNI	CAGNNNCTG	1 cut(s)	653
PsyI	GACNNNGTC	1 cut(s)	1071
PvuI	CGATCG	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	1127
RsaI	GTAC	4 cut(s)	124, 375, 849, 1012
RsaNI	GTAC	4 cut(s)	123, 374, 848, 1011
SaqAI	TTAA	8 cut(s)	267, 315, 434, 510, 627, 659, 831, 1189
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	4 cut(s)	159, 364, 749, 762
Sau96I	GGNCC	2 cut(s)	55, 551
SchI	GAGTC	1 cut(s)	930
ScrFI	CCNGG	4 cut(s)	549, 648, 976, 1071
SduI	GDGCHC	2 cut(s)	385, 495
SexAI	ACCWGGT	1 cut(s)	1069
SfaNI	GCATC	4 cut(s)	60, 800, 874, 886
SinI	GGWCC	2 cut(s)	55, 551
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
SpeI	ACTAGT	1 cut(s)	992
Sse9I	AATT	5 cut(s)	689, 832, 984, 1024, 1141
SsiI	CCGC	1 cut(s)	708
SspMI	CTAG	4 cut(s)	74, 218, 303, 993
StyD4I	CCNGG	4 cut(s)	547, 646, 974, 1069
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	7 cut(s)	84, 529, 620, 640, 702, 892, 1183
TaiI	ACGT	2 cut(s)	510, 570
TaqI	TCGA	6 cut(s)	158, 603, 704, 745, 939, 1083
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	5 cut(s)	689, 832, 984, 1024, 1141
TatI	WGTACW	2 cut(s)	122, 373
TfiI	GAWTC	2 cut(s)	226, 1114
Tru1I	TTAA	8 cut(s)	267, 315, 434, 510, 627, 659, 831, 1189
Tru9I	TTAA	8 cut(s)	267, 315, 434, 510, 627, 659, 831, 1189
TscAI	CASTG	4 cut(s)	390, 643, 895, 1186
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	8 cut(s)	146, 441, 511, 657, 825, 1018, 1046, 1181
TspGWI	ACGGA	3 cut(s)	6, 711, 996
TspRI	CASTG	4 cut(s)	390, 643, 895, 1186
Tth111I	GACNNNGTC	1 cut(s)	1071
VpaK11BI	GGWCC	2 cut(s)	55, 551
XapI	RAATTY	4 cut(s)	689, 984, 1024, 1141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XspI	CTAG	4 cut(s)	74, 218, 303, 993
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.