Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

18733115 .. 18734137

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G200700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAGTACTGCATTGGGTTGCAATCATTTTGTCCTTCGTAGCAGCTAGTCACAACCGTATAGGCCTTGTGGAAGCTTCAATTGACATAGGTGTTTGCTATGGAATGTTAGGGAATGACCTGCCTTCTCCAACACAAGTGGTAAATCTCTACAAAACATATGGTATTGGAAAGATGAGGCTCTTTGATCCTAACCCAGAAGCACTCCAAGCACTCAGAGGAAGCCAAATTGATGTCAGTATAGGCATTCGAAATGAAGACTTACCCAGTTTGGCAGTTAGTCAAGATGCTGTAAACTCATGGTTTGCAACCCACGTAGAGCCTTACCTTAATGACATTGTCTTCAATCACATTACGGTTGGCAATGAGATTATTCCCGGGTCCTCAGGCAACTATGTTCTGCCTGTAATGCAGTATCTACAGAAGATTCTCGACGATAGAAGCTTGGCTGGTATTAAGGTGACTACTGTTGTCTCAGGGGCTGCCTTAGGAGTTTCATATCCACCTTCAAGTGGTGCATTCACACTAGAGGCCAGCAGTACCATGAGTGGCATTCTTCCGCTTTTAGCACAACGAGGATCACCCCTTATGATCAATGTGTATCCTTACTTTGCCTACGCATCAGATCCTGTCAATGTTCACTTAGACTATGCTCAATTTACTGCAACAAGTCCTGTGGTTCAAGATGGGACGTTGAGCTATTATAACTTGTTTGATGCCACAGTTGATGCTTTTATTGCAGCAATGGAGAAAGTAGGCGGAGCTAACGTCGATGTGGTGGTGTCTGAGAGTGGTTGGCCTTCTGATGGGAATGGAGATTTCACTACTCCAGAACTTGCAGGGACATATAACAGGAATTTATTGAAGCAGGTAACCTCAAGGGCAGGGACACCAAAAAGACCTGGTGCTTACATTGAAGCCTACATTTTTGCCATGTTCAATGAGAATCAAAAACCTGATGGTGTGGAGCAACATTTTGGGCTTTTTCATCCTAACATGAAACCTGTTTATCCTGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

341

Amino Acids

36.75

Weight (kDa)

4.89

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
Acc36I	ACCTGC	2 cut(s)	129, 859
AciI	CCGC	2 cut(s)	560, 759
AclWI	GGATC	3 cut(s)	182, 586, 620
AcsI	RAATTY	1 cut(s)	856
AfaI	GTAC	2 cut(s)	9, 541
AfiI	CCNNNNNNNGG	2 cut(s)	512, 806
AgsI	TTSAA	7 cut(s)	81, 346, 510, 683, 865, 917, 940
AjnI	CCWGG	1 cut(s)	901
AluBI	AGCT	5 cut(s)	47, 77, 444, 699, 764
AluI	AGCT	5 cut(s)	47, 77, 444, 699, 764
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	3 cut(s)	182, 586, 620
AlwNI	CAGNNNCTG	2 cut(s)	482, 629
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	64, 531, 797
ApeKI	GCWGC	3 cut(s)	44, 482, 740
ApoI	RAATTY	1 cut(s)	856
AspS9I	GGNCC	1 cut(s)	381
AsuC2I	CCSGG	2 cut(s)	378, 379
AsuHPI	GGTGA	2 cut(s)	472, 573
AsuII	TTCGAA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	381
AxyI	CCTNAGG	2 cut(s)	385, 487
BbsI	GAAGAC	2 cut(s)	264, 334
BbvI	GCAGC	3 cut(s)	56, 469, 752
BccI	CCATC	3 cut(s)	680, 800, 953
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	2 cut(s)	378, 379
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	2 cut(s)	48, 527
BfmI	CTRYAG	1 cut(s)	419
BfuAI	ACCTGC	2 cut(s)	129, 859
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	3 cut(s)	45, 483, 741
BlsI	GCNGC	3 cut(s)	46, 484, 742
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	3 cut(s)	378, 379, 903
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	3 cut(s)	378, 379, 903
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	4 cut(s)	277, 629, 706, 718
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	2 cut(s)	264, 334
BpmI	CTGGAG	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	862
BpuMI	CCSGG	2 cut(s)	378, 379
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 806
Bse1I	ACTGG	1 cut(s)	267
Bse21I	CCTNAGG	2 cut(s)	385, 487
Bse3DI	GCAATG	2 cut(s)	370, 750
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	988
BseLI	CCNNNNNNNGG	2 cut(s)	512, 806
BseMI	GCAATG	2 cut(s)	370, 750
BseMII	CTCAG	4 cut(s)	229, 399, 489, 777
BseNI	ACTGG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	56, 469, 752
BshFI	GGCC	3 cut(s)	66, 533, 799
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	3 cut(s)	703, 856, 901
BslI	CCNNNNNNNGG	2 cut(s)	512, 806
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	3 cut(s)	703, 856, 901
BsmI	GAATGC	3 cut(s)	246, 518, 552
BsnI	GGCC	3 cut(s)	66, 533, 799
BsoBI	CYCGRG	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	187, 578, 591, 625
BspACI	CCGC	2 cut(s)	560, 759
BspANI	GGCC	3 cut(s)	66, 533, 799
BspCNI	CTCAG	4 cut(s)	228, 398, 488, 778
BspLI	GGNNCC	1 cut(s)	382
BspMI	ACCTGC	2 cut(s)	129, 859
BspPI	GGATC	3 cut(s)	182, 586, 620
BspT104I	TTCGAA	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	370, 750
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	4 cut(s)	187, 578, 591, 625
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	4 cut(s)	59, 358, 469, 724
BstBAI	YACGTR	1 cut(s)	316
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	6 cut(s)	215, 385, 475, 487, 643, 786
BstEII	GGTNACC	1 cut(s)	871
BstF5I	GGATG	1 cut(s)	988
BstKTI	GATC	4 cut(s)	190, 581, 594, 628
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	4 cut(s)	187, 578, 591, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 409, 737
BstNI	CCWGG	1 cut(s)	903
BstPI	GGTNACC	1 cut(s)	871
BstSCI	CCNGG	3 cut(s)	376, 377, 901
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	56, 469, 752
BstV2I	GAAGAC	2 cut(s)	264, 334
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
Bsu36I	CCTNAGG	2 cut(s)	385, 487
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	66, 533, 799
BtsCI	GGATG	1 cut(s)	988
BveI	ACCTGC	2 cut(s)	129, 859
Cac8I	GCNNGC	1 cut(s)	535
CaiI	CAGNNNCTG	2 cut(s)	482, 629
Cfr13I	GGNCC	1 cut(s)	381
Cfr9I	CCCGGG	1 cut(s)	377
CsiI	ACCWGGT	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	8, 540
CspCI	CAANNNNNGTGG	4 cut(s)	120, 155, 657, 692
CviAII	CATG	4 cut(s)	300, 544, 934, 997
CviQI	GTAC	2 cut(s)	8, 540
DdeI	CTNAG	6 cut(s)	215, 385, 475, 487, 643, 786
DpnI	GATC	4 cut(s)	189, 580, 593, 627
DpnII	GATC	4 cut(s)	187, 578, 591, 625
EciI	GGCGGA	1 cut(s)	774
Eco147I	AGGCCT	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	381
Eco81I	CCTNAGG	2 cut(s)	385, 487
Eco88I	CYCGRG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	381
EcoO65I	GGTNACC	1 cut(s)	871
EcoRII	CCWGG	1 cut(s)	901
FaeI	CATG	4 cut(s)	303, 547, 937, 1000
FaqI	GGGAC	3 cut(s)	703, 856, 901
FatI	CATG	4 cut(s)	299, 543, 933, 996
FauNDI	CATATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	45, 483, 741
FokI	GGATG	1 cut(s)	975
Fsp4HI	GCNGC	3 cut(s)	45, 483, 741
FspBI	CTAG	2 cut(s)	48, 527
GluI	GCNGC	3 cut(s)	45, 483, 741
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	3 cut(s)	66, 533, 799
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	4 cut(s)	303, 547, 937, 1000
HindIII	AAGCTT	2 cut(s)	75, 442
HinfI	GANTC	2 cut(s)	427, 946
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	2 cut(s)	472, 573
Hpy166II	GTNNAC	2 cut(s)	295, 640
Hpy188I	TCNGA	4 cut(s)	218, 625, 787, 805
Hpy188III	TCNNGA	4 cut(s)	284, 431, 683, 830
Hpy8I	GTNNAC	2 cut(s)	295, 640
Hpy99I	CGWCG	2 cut(s)	437, 773
HpyAV	CCTTC	4 cut(s)	46, 135, 516, 810
HpyCH4III	ACNGT	4 cut(s)	59, 358, 469, 724
HpyCH4IV	ACGT	3 cut(s)	315, 692, 768
HpyCH4V	TGCA	8 cut(s)	13, 23, 308, 412, 518, 665, 740, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 409, 737
HpyF3I	CTNAG	6 cut(s)	215, 385, 475, 487, 643, 786
HpySE526I	ACGT	3 cut(s)	315, 692, 768
Hsp92II	CATG	4 cut(s)	303, 547, 937, 1000
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	187, 578, 591, 625
LmnI	GCTCC	2 cut(s)	761, 967
Lsp1109I	GCAGC	3 cut(s)	56, 469, 752
LweI	GCATC	4 cut(s)	277, 629, 706, 718
MabI	ACCWGGT	1 cut(s)	901
MaeI	CTAG	2 cut(s)	48, 527
MaeII	ACGT	3 cut(s)	315, 692, 768
MaeIII	GTNAC	3 cut(s)	50, 460, 871
MalI	GATC	4 cut(s)	189, 580, 593, 627
MboI	GATC	4 cut(s)	187, 578, 591, 625
MboII	GAAGA	4 cut(s)	269, 334, 436, 548
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	4 cut(s)	81, 228, 656, 856
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	171, 212, 394, 523, 569, 886
MseI	TTAA	3 cut(s)	330, 456, 1021
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	3 cut(s)	378, 379, 903
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	3 cut(s)	246, 518, 552
MvaI	CCWGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	3 cut(s)	209, 409, 737
NciI	CCSGG	2 cut(s)	378, 379
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	4 cut(s)	187, 578, 591, 625
NlaIII	CATG	4 cut(s)	303, 547, 937, 1000
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	50, 460
NspV	TTCGAA	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	66
PctI	GAATGC	3 cut(s)	246, 518, 552
PfeI	GAWTC	2 cut(s)	427, 946
PflFI	GACNNNGTC	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	46, 484, 742
Ppu21I	YACGTR	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	901
PspEI	GGTNACC	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	381
PspPPI	RGGWCCY	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	482, 629
PsuI	RGATCY	1 cut(s)	625
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	2 cut(s)	9, 541
RsaNI	GTAC	2 cut(s)	8, 540
SaqAI	TTAA	3 cut(s)	330, 456, 1021
SatI	GCNGC	3 cut(s)	45, 483, 741
Sau3AI	GATC	4 cut(s)	187, 578, 591, 625
Sau96I	GGNCC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	3 cut(s)	378, 379, 903
SexAI	ACCWGGT	1 cut(s)	901
SfaNI	GCATC	4 cut(s)	277, 629, 706, 718
SfcI	CTRYAG	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	250
SinI	GGWCC	1 cut(s)	381
SmaI	CCCGGG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	877
SmoI	CTYRAG	1 cut(s)	877
Sse9I	AATT	4 cut(s)	81, 228, 656, 856
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	560, 759
SspMI	CTAG	2 cut(s)	48, 527
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	376, 377, 901
TaaI	ACNGT	4 cut(s)	59, 358, 469, 724
TaiI	ACGT	3 cut(s)	318, 695, 771
TaqI	TCGA	3 cut(s)	250, 432, 771
TasI	AATT	4 cut(s)	81, 228, 656, 856
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	427, 946
Tru1I	TTAA	3 cut(s)	330, 456, 1021
Tru9I	TTAA	3 cut(s)	330, 456, 1021
TseFI	GTSAC	2 cut(s)	50, 460
TseI	GCWGC	3 cut(s)	44, 482, 740
Tsp45I	GTSAC	2 cut(s)	50, 460
TspDTI	ATGAA	4 cut(s)	270, 486, 977, 1013
TspMI	CCCGGG	1 cut(s)	377
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	856
XmaI	CCCGGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	48, 527
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.