Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7183380 .. 7184276

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCAGTGCTACAGTGGATTGCATTCATTCTGGGTGTTGTAGCAACCCTTAACAACCATATAGGCCTTGTGGGAGCTTCAAAAATAGGCGTTTGCTATGGAATGCTGGGAAGTGACCTCCCTGCAGCAACAGAAAGGGAGCGGAATTTGTGTCACAGTTGGCATTTTCCGAACGAAGACTTGGCAGATTTAGCAATAAGCCAGGATGCTGTGAACACATGGTTCAACAACAATATCGCTCCTTATCTACATGACATTATCTTTGACTACATAGCCGTTGGTAACGAGGTCATTCCTCGTTCATTAGGCAACTATGTCTTGCCTGTAATGGAGTCGTTACAGAACATCCTTAAAGACAAAGGGACAGGGTATGTGACAAAGGTGACCACAGTTGTGCCATCAACTGCCCTAGGATCTTCATACCCGCCCTCTAGTGGGGAATTCACTCAAGAGGCTAGCAGTGTCATGCCCGACATTCTCAAGTTTTTAGCATCAACCCTTTCACCCCTTATGATCAATAAACCAGTGGTTCGAGACGGAAACTTAATGTACTTCTGCCTGTTTGATGCCATTGTGGATGCCTTTTTGGTGGCAATGGCGAAAGCAGGCAATGGGCATGTTAGAGTTGTGGTGTTCGATAGTGGTTGGCCTTCAGACGGGAACGAAAATTTCACCACTCCAGAGCTTGCAATGACATATAACCAGAACTTCATGTACCATTGCCTTTCCATGCAAGGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

248

Amino Acids

26.98

Weight (kDa)

4.85

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	55 - 240	5.2e-32	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	2 cut(s)	142, 425
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	3 cut(s)	145, 440, 667
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	2 cut(s)	551, 716
AfiI	CCNNNNNNNGG	4 cut(s)	434, 435, 656, 735
AgsI	TTSAA	2 cut(s)	81, 226
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	77, 685
AluI	AGCT	2 cut(s)	77, 685
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	421
AoxI	GGCC	2 cut(s)	64, 647
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	3 cut(s)	145, 440, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspA2I	CCTAGG	1 cut(s)	409
AsuHPI	GGTGA	3 cut(s)	394, 495, 664
AsuNHI	GCTAGC	1 cut(s)	455
AvrII	CCTAGG	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	3 cut(s)	410, 432, 456
BfmI	CTRYAG	2 cut(s)	11, 123
BisI	GCNGC	1 cut(s)	126
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	4 cut(s)	196, 500, 556, 568
BmtI	GCTAGC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	432, 464
BsaJI	CCNNGG	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	4 cut(s)	434, 435, 656, 735
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	4 cut(s)	600, 616, 696, 718
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	3 cut(s)	211, 345, 583
BseLI	CCNNNNNNNGG	4 cut(s)	434, 435, 656, 735
BseMI	GCAATG	4 cut(s)	600, 616, 696, 718
BseNI	ACTGG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	66, 649
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	4 cut(s)	434, 435, 656, 735
BsmAI	GTCTC	1 cut(s)	528
BsmBI	CGTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	23, 108
BsnI	GGCC	2 cut(s)	66, 649
Bsp143I	GATC	2 cut(s)	413, 513
BspACI	CCGC	2 cut(s)	142, 425
BspANI	GGCC	2 cut(s)	66, 649
BspMAI	CTGCAG	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	4 cut(s)	600, 616, 696, 718
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	2 cut(s)	413, 513
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	15, 158, 391
BstC8I	GCNNGC	3 cut(s)	457, 607, 687
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	3 cut(s)	211, 345, 583
BstKTI	GATC	2 cut(s)	416, 516
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	2 cut(s)	413, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	620
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	2 cut(s)	11, 123
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	66, 649
BtsCI	GGATG	3 cut(s)	211, 345, 583
BtsI	GCAGTG	2 cut(s)	12, 466
BtsIMutI	CAGTG	4 cut(s)	12, 20, 466, 531
Cac8I	GCNNGC	3 cut(s)	457, 607, 687
Csp6I	GTAC	2 cut(s)	550, 715
CviAII	CATG	6 cut(s)	219, 251, 466, 617, 712, 730
CviJI	RGCY	7 cut(s)	66, 77, 201, 275, 455, 649, 685
CviKI_1	RGCY	7 cut(s)	66, 77, 201, 275, 455, 649, 685
CviQI	GTAC	2 cut(s)	550, 715
DpnI	GATC	2 cut(s)	415, 515
DpnII	GATC	2 cut(s)	413, 513
Eco130I	CCWWGG	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	636
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	6 cut(s)	222, 254, 469, 620, 715, 733
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	6 cut(s)	218, 250, 465, 616, 711, 729
FauI	CCCGC	1 cut(s)	432
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	3 cut(s)	218, 332, 590
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	3 cut(s)	410, 432, 456
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	66, 649
Hin1II	CATG	6 cut(s)	222, 254, 469, 620, 715, 733
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	3 cut(s)	394, 495, 664
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	171, 655
Hpy188III	TCNNGA	3 cut(s)	449, 533, 680
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	660
HpyCH4III	ACNGT	3 cut(s)	15, 158, 391
HpyCH4V	TGCA	4 cut(s)	23, 125, 689, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
Hsp92II	CATG	6 cut(s)	222, 254, 469, 620, 715, 733
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	413, 513
LmnI	GCTCC	3 cut(s)	74, 139, 244
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	4 cut(s)	196, 500, 556, 568
MaeI	CTAG	3 cut(s)	410, 432, 456
MaeIII	GTNAC	6 cut(s)	113, 152, 281, 336, 373, 382
MalI	GATC	2 cut(s)	415, 515
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	2 cut(s)	413, 513
MboII	GAAGA	2 cut(s)	188, 408
MflI	RGATCY	1 cut(s)	413
MluCI	AATT	3 cut(s)	145, 440, 667
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	5 cut(s)	128, 280, 306, 439, 445
MseI	TTAA	3 cut(s)	51, 351, 545
MslI	CAYNNNNRTG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	2 cut(s)	23, 108
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	2 cut(s)	413, 513
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	6 cut(s)	222, 254, 469, 620, 715, 733
NmuCI	GTSAC	4 cut(s)	113, 152, 373, 382
NspI	RCATGY	1 cut(s)	620
OliI	CACNNNNGTG	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	66
PctI	GAATGC	2 cut(s)	23, 108
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	201
PsrI	GAACNNNNNNTAC	2 cut(s)	698, 730
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	2 cut(s)	551, 716
RsaNI	GTAC	2 cut(s)	550, 715
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	51, 351, 545
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	413, 513
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	79, 120, 291, 384, 687
SfaNI	GCATC	4 cut(s)	196, 500, 556, 568
SfcI	CTRYAG	2 cut(s)	11, 123
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	447, 479
SmoI	CTYRAG	2 cut(s)	447, 479
Sse9I	AATT	3 cut(s)	145, 440, 667
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	142, 425
SspMI	CTAG	3 cut(s)	410, 432, 456
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	3 cut(s)	15, 158, 391
TaqI	TCGA	2 cut(s)	532, 636
TasI	AATT	3 cut(s)	145, 440, 667
TatI	WGTACW	1 cut(s)	549
Tru1I	TTAA	3 cut(s)	51, 351, 545
Tru9I	TTAA	3 cut(s)	51, 351, 545
TscAI	CASTG	4 cut(s)	12, 20, 466, 531
TseFI	GTSAC	4 cut(s)	113, 152, 373, 382
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	4 cut(s)	113, 152, 373, 382
TspDTI	ATGAA	4 cut(s)	16, 291, 408, 700
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	4 cut(s)	12, 20, 466, 531
XapI	RAATTY	3 cut(s)	145, 440, 667
XceI	RCATGY	1 cut(s)	620
XmaJI	CCTAGG	1 cut(s)	409
XspI	CTAG	3 cut(s)	410, 432, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.