Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

35129330 .. 35129677

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG195500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCAGTCTCTACAAAACATTAATCTTAATGCTAAGAACCTAGCTACTCGTATTAAGGTGTCAACAGTTGTGCCAGGAACTGTTTTGGGGGCTTCATATCCGCCTTCAAGTGGTGCATTTACAGCAGATACACGTGATGTTATGAGTGGCATTCTTGCGTTCTTGTCTAGACAAGGATCGCCTCTTTTGATCAATGCGTATCCCTATTTTGCTTATGTATCTGACCCTGTAAATGTTAGATTGGATTATGCTCAATTTACTGCAACAAGTCCTGGGGCCATAGATGGAAATTTGAACCACTTTAACTTGTTTGACTCCTTGGTTGATCCCTTTTTCTCAGCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

115

Amino Acids

12.37

Weight (kDa)

5.47

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	8 - 114	6.6e-22	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	2 cut(s)	184, 320
AcsI	RAATTY	1 cut(s)	289
AcvI	CACGTG	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	108, 295
AjnI	CCWGG	2 cut(s)	73, 271
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	184, 320
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	289
AseI	ATTAAT	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	276
BbrPI	CACGTG	1 cut(s)	134
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	75, 273
BciVI	GTATCC	1 cut(s)	210
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	41, 168
BfuI	GTATCC	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	75, 273
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	75, 273
BsaAI	YACGTR	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	272, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	75, 273
BseDI	CCNNGG	2 cut(s)	272, 318
BseLI	CCNNNNNNNGG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	176, 189, 325
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	184, 320
BssECI	CCNNGG	2 cut(s)	272, 318
BssMI	GATC	3 cut(s)	176, 189, 325
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	75, 273
Bst4CI	ACNGT	2 cut(s)	67, 82
BstBAI	YACGTR	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	33, 337
BstKTI	GATC	3 cut(s)	179, 192, 328
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	176, 189, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	2 cut(s)	75, 273
BstSCI	CCNGG	2 cut(s)	73, 271
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	278
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	276
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	4 cut(s)	44, 92, 278, 341
CviKI_1	RGCY	4 cut(s)	44, 92, 278, 341
DdeI	CTNAG	2 cut(s)	33, 337
DpnI	GATC	3 cut(s)	178, 191, 327
DpnII	GATC	3 cut(s)	176, 189, 325
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	73, 271
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	346
FaiI	YATR	6 cut(s)	97, 143, 216, 249, 281, 344
FatI	CATG	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	189
FspBI	CTAG	2 cut(s)	41, 168
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	2 cut(s)	67, 82
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	4, 116, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	33, 337
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	176, 189, 325
LpnPI	CCDG	5 cut(s)	60, 87, 240, 258, 285
MaeI	CTAG	2 cut(s)	41, 168
MaeII	ACGT	1 cut(s)	133
MalI	GATC	3 cut(s)	178, 191, 327
MboI	GATC	3 cut(s)	176, 189, 325
MluCI	AATT	2 cut(s)	254, 289
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	1 cut(s)	192
MseI	TTAA	4 cut(s)	21, 27, 54, 303
MspR9I	CCNGG	2 cut(s)	75, 273
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	75, 273
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	3 cut(s)	176, 189, 325
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	277
PctI	GAATGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	308
PmaCI	CACGTG	1 cut(s)	134
PmlI	CACGTG	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	73, 271
PspCI	CACGTG	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	73, 271
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	21, 27, 54, 303
Sau3AI	GATC	3 cut(s)	176, 189, 325
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	75, 273
SetI	ASST	4 cut(s)	42, 46, 60, 136
Sse9I	AATT	2 cut(s)	254, 289
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	41, 168
StyD4I	CCNGG	2 cut(s)	73, 271
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	67, 82
TaiI	ACGT	1 cut(s)	136
TasI	AATT	2 cut(s)	254, 289
Tru1I	TTAA	4 cut(s)	21, 27, 54, 303
Tru9I	TTAA	4 cut(s)	21, 27, 54, 303
TspDTI	ATGAA	1 cut(s)	84
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	1 cut(s)	289
XbaI	TCTAGA	1 cut(s)	167
XspI	CTAG	2 cut(s)	41, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.