Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7174185 .. 7175732

Gene Structure 1548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAAGTATCGTACTGGATTGCAATCATTCTGTCACTTTTAGCAACAATTGAAAACCATGTATTTCTACTGGAAGCTTCAGACGTAGGAGTTTGCTATGGAACATTAGTGAATGACCTCCCTGCAGCAACAGAAGTTGTCAATCTCTACAAGAAACATAGTATTACCAAAATGAGGCTCTTTGATCCAAACACAGCAGCCTTTCAGGCACTGAAAGGAAGCGGAATCAGTGTCATACTTGGCATTCGAAACCAAGACTTACCCGCACTGGCAGCAAGTCAAGAAGCTGTGAACGCATGGTTCACCACCAATGTTGAGCCTTACCTTGATGGTATTGAACTCAGTTATATTGCTGTTGGCAATGAGGTGACCACAGTTGTTCCAGGAACCGCCTTAGGATCTTCATACCCGCCTTCAAGTGGTGTATTCGCAGCGGAGGCTGTTGAATTCATGACCAGCATTGTTCAATTTTTAGCGTCAACCAATTCATCTCTTATGATCAACGCGTACCCTTACTTTGCCTACAAGTCAGACCCTGCCAAAGTTCACTTGGACTATGCTCTATTCACTACTAAAACCTCGGTGATTCAAGACGGACCACTCAGCTACTACACGGCAATGGAGAAAGTAGGCGGCCCAAATGTCACGGTTGTGGTGTCTGAAAGTGGTTGGCCTTCTGCTGGGAGCGGACATGCCAAATCCACGACCTTGATTCATTCTTCACGATTAGCCACAATTCAAGCCGCCTCTTTCTTTCTCCTTCTCCTTCAATCCTCCAGTAGTCCAGTTCTCCATGTCAATCTGCTAAGGGTTTCCTCTGCCAAATCCGACTTCCGACAAATCTCTTTGATTATCAACTCCAAGATAACAACAAGATCATGCTATAGGCTCAGCACAGAGAAGGCTAGGCGATGCCATCATCATCCACCGATCTGTGCTGAGGCTTCATCATCCATCAATCTGAAGCTCACAGAATCTGGGTCCGATCTCGAAGCTCATAGCTCTTCCATCTGTGCTAAGGTTTCATCATCCATCAATCTGAAGCTCACAAAATCTGGGTCCGATCTAGAAGCTCACGACTCTTTGATCTGTGCTAAGGGCTTCATCATCCATCGATCTGAAGCTTATAGAATCTGGGTCCGATCTCGAAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

386

Amino Acids

41.52

Weight (kDa)

7.19

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 126	1.4e-23	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	130 - 232	3.1e-24	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	687
AccII	CGCG	1 cut(s)	506
AciI	CCGC	8 cut(s)	222, 264, 390, 410, 434, 633, 687, 744
AclWI	GGATC	2 cut(s)	179, 406
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	4 cut(s)	63, 983, 1061, 1140
AfaI	GTAC	2 cut(s)	14, 509
AfiI	CCNNNNNNNGG	3 cut(s)	174, 419, 680
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	8 cut(s)	53, 338, 417, 446, 467, 590, 740, 770
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AleI	CACNNNNGTG	1 cut(s)	650
AlwI	GGATC	2 cut(s)	179, 406
AlwNI	CAGNNNCTG	3 cut(s)	211, 536, 977
AoxI	GGCC	2 cut(s)	634, 671
ApeKI	GCWGC	4 cut(s)	125, 197, 272, 431
ApoI	RAATTY	1 cut(s)	446
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AspS9I	GGNCC	5 cut(s)	596, 635, 981, 1059, 1138
AsuHPI	GGTGA	3 cut(s)	295, 379, 595
AsuII	TTCGAA	1 cut(s)	247
AvaII	GGWCC	4 cut(s)	596, 981, 1059, 1138
AxyI	CCTNAGG	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	939
BbvI	GCAGC	4 cut(s)	137, 209, 284, 443
BccI	CCATC	6 cut(s)	323, 924, 962, 1016, 1040, 1119
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	384
BclI	TGATCA	1 cut(s)	498
BfaI	CTAG	2 cut(s)	906, 1067
BfmI	CTRYAG	2 cut(s)	123, 883
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	6 cut(s)	126, 198, 273, 432, 634, 744
BlpI	GCTNAGC	1 cut(s)	890
BlsI	GCNGC	6 cut(s)	127, 199, 274, 433, 635, 745
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	4 cut(s)	596, 981, 1059, 1138
BmgT120I	GGNCC	5 cut(s)	596, 635, 981, 1059, 1138
BmiI	GGNNCC	4 cut(s)	388, 982, 1060, 1139
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	902
BpmI	CTGGAG	1 cut(s)	760
Bpu10I	CCTNAGC	4 cut(s)	806, 939, 1017, 1095
Bpu1102I	GCTNAGC	1 cut(s)	890
Bpu14I	TTCGAA	1 cut(s)	247
Bsa29I	ATCGAT	1 cut(s)	1114
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 419, 680
Bse1I	ACTGG	5 cut(s)	20, 75, 273, 777, 785
Bse21I	CCTNAGG	1 cut(s)	394
Bse3DI	GCAATG	2 cut(s)	367, 624
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	1114
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	4 cut(s)	922, 950, 1028, 1107
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	3 cut(s)	174, 419, 680
BseMI	GCAATG	2 cut(s)	367, 624
BseMII	CTCAG	4 cut(s)	355, 616, 904, 930
BseNI	ACTGG	5 cut(s)	20, 75, 273, 777, 785
BseXI	GCAGC	4 cut(s)	137, 209, 284, 443
BseYI	CCCAGC	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	636, 673
BshVI	ATCGAT	1 cut(s)	1114
BslI	CCNNNNNNNGG	3 cut(s)	174, 419, 680
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	636, 673
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1720I	GCTNAGC	1 cut(s)	890
BspACI	CCGC	8 cut(s)	222, 264, 390, 410, 434, 633, 687, 744
BspANI	GGCC	2 cut(s)	636, 673
BspCNI	CTCAG	4 cut(s)	354, 615, 903, 931
BspDI	ATCGAT	1 cut(s)	1114
BspFNI	CGCG	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	4 cut(s)	388, 982, 1060, 1139
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	2 cut(s)	179, 406
BspQI	GCTCTTC	1 cut(s)	1009
BspT104I	TTCGAA	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	687
BsrDI	GCAATG	2 cut(s)	367, 624
BsrI	ACTGG	5 cut(s)	20, 75, 273, 777, 785
BssECI	CCNNGG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	376, 649
Bst6I	CTCTTC	1 cut(s)	1009
BstBI	TTCGAA	1 cut(s)	247
BstDEI	CTNAG	8 cut(s)	341, 394, 602, 806, 890, 939, 1017, 1095
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	4 cut(s)	922, 950, 1028, 1107
BstFNI	CGCG	1 cut(s)	506
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 437
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	695
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	123, 883
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	4 cut(s)	137, 209, 284, 443
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	1114
Bsu36I	CCTNAGG	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	636, 673
BsuTUI	ATCGAT	1 cut(s)	1114
BtgZI	GCGATG	1 cut(s)	925
BtsCI	GGATG	4 cut(s)	922, 950, 1028, 1107
BtsIMutI	CAGTG	3 cut(s)	209, 235, 266
CaiI	CAGNNNCTG	3 cut(s)	211, 536, 977
CciI	TCATGA	1 cut(s)	450
Cfr13I	GGNCC	5 cut(s)	596, 635, 981, 1059, 1138
ClaI	ATCGAT	1 cut(s)	1114
CseI	GACGC	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	13, 508
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	6 cut(s)	59, 297, 451, 692, 794, 879
CviQI	GTAC	2 cut(s)	13, 508
DdeI	CTNAG	8 cut(s)	341, 394, 602, 806, 890, 939, 1017, 1095
Eam1104I	CTCTTC	1 cut(s)	1009
EarI	CTCTTC	1 cut(s)	1009
Eco47I	GGWCC	4 cut(s)	596, 981, 1059, 1138
Eco57I	CTGAAG	4 cut(s)	63, 983, 1061, 1140
Eco81I	CCTNAGG	1 cut(s)	394
Eco91I	GGTNACC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	6 cut(s)	62, 300, 454, 695, 797, 882
FatI	CATG	6 cut(s)	58, 296, 450, 691, 793, 878
FauI	CCCGC	2 cut(s)	271, 417
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	6 cut(s)	126, 198, 273, 432, 634, 744
FokI	GGATG	4 cut(s)	909, 937, 1015, 1094
Fsp4HI	GCNGC	6 cut(s)	126, 198, 273, 432, 634, 744
FspBI	CTAG	2 cut(s)	906, 1067
GluI	GCNGC	6 cut(s)	126, 198, 273, 432, 634, 744
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	760
HaeIII	GGCC	2 cut(s)	636, 673
HgaI	GACGC	1 cut(s)	465
Hin1II	CATG	6 cut(s)	62, 300, 454, 695, 797, 882
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	2 cut(s)	75, 1122
HinfI	GANTC	6 cut(s)	225, 586, 712, 974, 1079, 1131
HphI	GGTGA	3 cut(s)	295, 379, 595
Hpy166II	GTNNAC	4 cut(s)	292, 303, 480, 547
Hpy188III	TCNNGA	8 cut(s)	281, 451, 590, 723, 989, 1067, 1076, 1146
Hpy8I	GTNNAC	4 cut(s)	292, 303, 480, 547
HpyAV	CCTTC	5 cut(s)	423, 684, 770, 776, 895
HpyCH4III	ACNGT	2 cut(s)	376, 649
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	23, 125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 437
HpyF3I	CTNAG	8 cut(s)	341, 394, 602, 806, 890, 939, 1017, 1095
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	62, 300, 454, 695, 797, 882
Ksp22I	TGATCA	1 cut(s)	498
LguI	GCTCTTC	1 cut(s)	1009
LmnI	GCTCC	1 cut(s)	684
Lsp1109I	GCAGC	4 cut(s)	137, 209, 284, 443
LweI	GCATC	1 cut(s)	902
MaeI	CTAG	2 cut(s)	906, 1067
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	33, 367, 643
MbiI	CCGCTC	1 cut(s)	687
MboII	GAAGA	3 cut(s)	393, 711, 996
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	5 cut(s)	48, 446, 467, 484, 735
MluI	ACGCGT	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	1073
MmeI	TCCRAC	2 cut(s)	852, 859
MnlI	CCTC	9 cut(s)	128, 168, 358, 430, 589, 757, 784, 826, 934
MslI	CAYNNNNRTG	2 cut(s)	617, 650
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 437
NlaIII	CATG	6 cut(s)	62, 300, 454, 695, 797, 882
NlaIV	GGNNCC	4 cut(s)	388, 982, 1060, 1139
NmuCI	GTSAC	3 cut(s)	33, 367, 643
NspI	RCATGY	1 cut(s)	695
NspV	TTCGAA	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	1009
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	5 cut(s)	225, 586, 712, 974, 1131
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	6 cut(s)	127, 199, 274, 433, 635, 745
PleI	GAGTC	1 cut(s)	1073
PpsI	GAGTC	1 cut(s)	1073
Psp6I	CCWGG	1 cut(s)	382
PspEI	GGTNACC	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	4 cut(s)	388, 982, 1060, 1139
PspPI	GGNCC	5 cut(s)	596, 635, 981, 1059, 1138
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	3 cut(s)	211, 536, 977
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	14, 509
RsaNI	GTAC	2 cut(s)	13, 508
RseI	CAYNNNNRTG	2 cut(s)	617, 650
SapI	GCTCTTC	1 cut(s)	1009
SatI	GCNGC	6 cut(s)	126, 198, 273, 432, 634, 744
Sau96I	GGNCC	5 cut(s)	596, 635, 981, 1059, 1138
SchI	GAGTC	1 cut(s)	1073
ScrFI	CCNGG	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	902
SfcI	CTRYAG	2 cut(s)	123, 883
SfuI	TTCGAA	1 cut(s)	247
SinI	GGWCC	4 cut(s)	596, 981, 1059, 1138
SmiMI	CAYNNNNRTG	2 cut(s)	617, 650
Sse9I	AATT	5 cut(s)	48, 446, 467, 484, 735
SsiI	CCGC	8 cut(s)	222, 264, 390, 410, 434, 633, 687, 744
SspMI	CTAG	2 cut(s)	906, 1067
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	376, 649
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	4 cut(s)	247, 990, 1114, 1147
TasI	AATT	5 cut(s)	48, 446, 467, 484, 735
TauI	GCSGC	2 cut(s)	636, 746
TfiI	GAWTC	5 cut(s)	225, 586, 712, 974, 1131
TscAI	CASTG	3 cut(s)	216, 235, 273
TseFI	GTSAC	3 cut(s)	33, 367, 643
TseI	GCWGC	4 cut(s)	125, 197, 272, 431
Tsp45I	GTSAC	3 cut(s)	33, 367, 643
TspDTI	ATGAA	7 cut(s)	393, 439, 477, 704, 936, 1014, 1093
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	3 cut(s)	216, 235, 273
VpaK11BI	GGWCC	4 cut(s)	596, 981, 1059, 1138
XapI	RAATTY	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	1066
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	2 cut(s)	906, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.