Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7598654 .. 7598821

Gene Structure 168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGTACCATTGCCTTTCCATGGAAGGGACACCAAAAAGACCCGATGAACCTATTGAAGCGTTTATTTTTGCCATGTTCAATGAGAACCATAAACCTAAGGGCGAGGAGCAACATTTTGGTCTCTTCTATCCCAACATGGAACCTGTTTATTATATGCCTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

55

Amino Acids

6.59

Weight (kDa)

5.11

Isoelectric Point (pI)

80.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	8 - 53	7.2e-15	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	19, 24
AgsI	TTSAA	2 cut(s)	56, 79
Alw26I	GTCTC	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 24
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	19, 24
BseMI	GCAATG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	19, 24
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	40
Bso31I	GGTCTC	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	19, 73, 136
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	125
Eco81I	CCTNAGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	3 cut(s)	22, 76, 139
FaiI	YATR	6 cut(s)	20, 74, 90, 137, 153, 155
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	18, 72, 135
Hin1II	CATG	3 cut(s)	22, 76, 139
HpyAV	CCTTC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	22, 76, 139
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	1 cut(s)	156
MboII	GAAGA	1 cut(s)	115
MnlI	CCTC	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	18
NlaIII	CATG	3 cut(s)	22, 76, 139
NlaIV	GGNNCC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	141
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SetI	ASST	3 cut(s)	52, 97, 145
SgeI	CNNG	6 cut(s)	31, 53, 85, 115, 148, 155
StyI	CCWWGG	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.