Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7598826 .. 7599275

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGTCGTTACAAAACATCCTTAAAGACAAAGGGTATGTGACAAAGGTGACCACAGTTGTGCCATCAACTGCCCTAGGATCTTCATACCCGCCCTCTAGTGGGGAATTCACACAAGAGGCTAGCAGTGTCATGCCCGACATTCTAAAGTTTTTAGCATCAACCCTTTCACCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAGACCCTGCCCATGTTCCCTTAGACTATGCTCAGTTCACTTCGGATAAACCAGTGGTTCGAGACGGAAACTTACTGTACTTCTGCCTGTTTGATGCCATTGTGGATGCCTTTTTGGCAGCAATGGCGAAAGCAGGAAACGGGCATGTCAGAGTTGTGGTGTCTGAGAGTGGTTGGCCTTCGGACGAGAACGGAAATTTCACCACTCCAGAGCTTGCAATGACATATAACCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

149

Amino Acids

16.27

Weight (kDa)

4.99

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 147	1.1e-32	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	107, 406
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	101, 102
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	88
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	2 cut(s)	107, 406
AspA2I	CCTAGG	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	61, 162, 403
AsuNHI	GCTAGC	1 cut(s)	122
AvrII	CCTAGG	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	201
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	3 cut(s)	77, 99, 123
BfuI	GTATCC	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	330
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	331
BmsI	GCATC	3 cut(s)	167, 295, 307
BmtI	GCTAGC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 102
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	2 cut(s)	339, 435
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	18, 322
BseLI	CCNNNNNNNGG	2 cut(s)	101, 102
BseMI	GCAATG	2 cut(s)	339, 435
BseMII	CTCAG	2 cut(s)	257, 366
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	101, 102
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	80, 180
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	256, 367
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	88
BsrDI	GCAATG	2 cut(s)	339, 435
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	80, 180
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	58, 288
BstC8I	GCNNGC	2 cut(s)	124, 426
BstDEI	CTNAG	3 cut(s)	232, 243, 375
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	18, 322
BstKTI	GATC	2 cut(s)	83, 183
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	80, 180
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstNSI	RCATGY	1 cut(s)	359
BstPI	GGTNACC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	18, 322
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	133, 270
Cac8I	GCNNGC	2 cut(s)	124, 426
CaiI	CAGNNNCTG	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	133, 224, 356
CviJI	RGCY	3 cut(s)	122, 388, 424
CviKI_1	RGCY	3 cut(s)	122, 388, 424
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	232, 243, 375
DpnI	GATC	2 cut(s)	82, 182
DpnII	GATC	2 cut(s)	80, 180
Eco130I	CCWWGG	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	3 cut(s)	136, 227, 359
FatI	CATG	3 cut(s)	132, 223, 355
FauI	CCCGC	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	2 cut(s)	5, 329
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	3 cut(s)	77, 99, 123
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	136, 227, 359
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	3 cut(s)	61, 162, 403
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	5 cut(s)	214, 256, 362, 376, 394
Hpy188III	TCNNGA	2 cut(s)	272, 419
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	2 cut(s)	58, 288
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	3 cut(s)	232, 243, 375
Hsp92II	CATG	3 cut(s)	136, 227, 359
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	80, 180
LpnPI	CCDG	5 cut(s)	231, 276, 311, 330, 432
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	3 cut(s)	167, 295, 307
MaeI	CTAG	3 cut(s)	77, 99, 123
MaeIII	GTNAC	3 cut(s)	9, 40, 49
MalI	GATC	2 cut(s)	82, 182
MboI	GATC	2 cut(s)	80, 180
MboII	GAAGA	1 cut(s)	75
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	2 cut(s)	107, 406
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	2 cut(s)	106, 112
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NdeII	GATC	2 cut(s)	80, 180
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	136, 227, 359
NmuCI	GTSAC	2 cut(s)	40, 49
NspI	RCATGY	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspEI	GGTNACC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	80, 180
SchI	GAGTC	1 cut(s)	14
SetI	ASST	2 cut(s)	51, 426
SfaNI	GCATC	3 cut(s)	167, 295, 307
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	107, 406
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	3 cut(s)	77, 99, 123
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	58, 288
TaqI	TCGA	1 cut(s)	271
TasI	AATT	2 cut(s)	107, 406
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	133, 270
TseFI	GTSAC	2 cut(s)	40, 49
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	40, 49
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	2 cut(s)	291, 417
TspRI	CASTG	2 cut(s)	133, 270
XapI	RAATTY	2 cut(s)	107, 406
XceI	RCATGY	1 cut(s)	359
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	3 cut(s)	77, 99, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.