Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7838957 .. 7839798

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG093600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGAGGCAGGGAAATGACCTTCCTGCAGCAACAGATGTTATCAATCTCTACAAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACCTAACCATGCAGCGCTCGATGCCCTGAAAGGGAGTGGAATCGGTGTCACGATAGGCATTCCAAACGATGAGTTGGCGCATTTGGCAACAGGCCAAGCTGCTGTGGACATATGGTTCAACGACAATGTAGCTCCTTATATAAATGACGGTAACATCAATTACATCGCCGTCGGTAACGAGCCCGACCTTCCCGGGTCAGTAGGCATCAATAATATCTTGCCGGTAATGAAGTTGTTTCACAACATAGTTAGTGACAAAGGGATTAAGGTGACCACAGTTGTGTCAACATTTATCCTAGGATCTTCATACCCACCTTCGAGTGGTGCATTCACATCAGAGGCTAGTAGTGTAACGTCCGGCATTCTTGAGTTTTTAGCATCAACCGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAAACCCTGGCAGTGTTCGCTTAGACTATGCTCAATTCACTGCAACAGACACGGTGGTGCAAGACGGAGCATACAGCTACCACAATCTGTTTGATGCCATGGTCGATTCTTTCGTGGCAGCGATGGAGAAAGCAGGCGGCGGAAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

223

Amino Acids

23.73

Weight (kDa)

4.91

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	19 - 223	1.8e-46	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	657, 660
AclWI	GGATC	1 cut(s)	397
AfeI	AGCGCT	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	120, 410
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	526
AleI	CACNNNNGTG	2 cut(s)	368, 575
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	3 cut(s)	188, 221, 597
AluI	AGCT	3 cut(s)	188, 221, 597
AlwI	GGATC	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	281
Aor51HI	AGCGCT	1 cut(s)	105
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	4 cut(s)	28, 101, 188, 638
AspA2I	CCTAGG	1 cut(s)	385
AspLEI	GCGC	2 cut(s)	106, 169
AsuC2I	CCSGG	2 cut(s)	282, 283
AsuHPI	GGTGA	1 cut(s)	370
AsuII	TTCGAA	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	281
AvrII	CCTAGG	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	40, 113, 175, 650
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	2 cut(s)	79, 242
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	2 cut(s)	282, 283
BfaI	CTAG	2 cut(s)	386, 432
BfmI	CTRYAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	5 cut(s)	29, 102, 189, 639, 658
BlnI	CCTAGG	1 cut(s)	385
BlsI	GCNGC	5 cut(s)	30, 103, 190, 640, 659
Bme1390I	CCNGG	3 cut(s)	282, 283, 528
BmeT110I	CYCGRG	1 cut(s)	281
BmrFI	CCNGG	3 cut(s)	282, 283, 528
BmsI	GCATC	4 cut(s)	100, 303, 476, 604
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	2 cut(s)	282, 283
BsaJI	CCNNGG	4 cut(s)	281, 385, 526, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 410
Bse118I	RCCGGY	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	281, 385, 526, 618
BseLI	CCNNNNNNNGG	2 cut(s)	120, 410
BseMI	GCAATG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	40, 113, 175, 650
BshFI	GGCC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	3 cut(s)	282, 311, 447
BslI	CCNNNNNNNGG	2 cut(s)	120, 410
BsmI	GAATGC	3 cut(s)	147, 416, 450
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	389, 489
Bsp19I	CCATGG	1 cut(s)	618
BspACI	CCGC	2 cut(s)	657, 660
BspANI	GGCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	397
BspQI	GCTCTTC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	4 cut(s)	281, 385, 526, 618
BssMI	GATC	2 cut(s)	389, 489
BssT1I	CCWWGG	2 cut(s)	385, 618
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	239, 367, 574
Bst6I	CTCTTC	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	1 cut(s)	541
BstDSI	CCRYGG	1 cut(s)	618
BstEII	GGTNACC	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	106, 169
BstKTI	GATC	2 cut(s)	392, 492
BstMBI	GATC	2 cut(s)	389, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 173, 537
BstNI	CCWGG	1 cut(s)	528
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	280, 281, 526
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	4 cut(s)	40, 113, 175, 650
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	618
BtgZI	GCGATG	2 cut(s)	238, 656
BtsI	GCAGTG	2 cut(s)	538, 558
BtsIMutI	CAGTG	2 cut(s)	538, 558
Cac8I	GCNNGC	1 cut(s)	655
CfoI	GCGC	2 cut(s)	106, 169
Cfr10I	RCCGGY	1 cut(s)	310
Cfr9I	CCCGGG	1 cut(s)	281
CviAII	CATG	2 cut(s)	98, 619
CviJI	RGCY	7 cut(s)	82, 183, 188, 221, 271, 431, 597
CviKI_1	RGCY	7 cut(s)	82, 183, 188, 221, 271, 431, 597
DdeI	CTNAG	1 cut(s)	541
DpnI	GATC	2 cut(s)	391, 491
DpnII	GATC	2 cut(s)	389, 489
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	385, 618
Eco24I	GRGCYC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	385, 618
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	2 cut(s)	385, 618
FaeI	CATG	2 cut(s)	101, 622
FatI	CATG	2 cut(s)	97, 618
FauNDI	CATATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	5 cut(s)	29, 102, 189, 639, 658
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	5 cut(s)	29, 102, 189, 639, 658
FspBI	CTAG	2 cut(s)	386, 432
GlaI	GCGC	2 cut(s)	105, 168
GluI	GCNGC	5 cut(s)	29, 102, 189, 639, 658
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	3 cut(s)	282, 311, 447
HhaI	GCGC	2 cut(s)	106, 169
Hin1II	CATG	2 cut(s)	101, 622
Hin6I	GCGC	2 cut(s)	104, 167
HinP1I	GCGC	2 cut(s)	104, 167
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	3 cut(s)	129, 476, 626
HpaII	CCGG	3 cut(s)	282, 311, 447
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	196, 375
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	139, 455
Hpy8I	GTNNAC	2 cut(s)	196, 375
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	31, 287, 414
HpyCH4III	ACNGT	3 cut(s)	239, 367, 574
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	6 cut(s)	28, 71, 101, 416, 563, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 173, 537
HpyF3I	CTNAG	1 cut(s)	541
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	101, 622
HspAI	GCGC	2 cut(s)	104, 167
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	389, 489
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	226, 587
LpnPI	CCDG	9 cut(s)	38, 128, 165, 295, 324, 460, 513, 540, 639
Lsp1109I	GCAGC	4 cut(s)	40, 113, 175, 650
LweI	GCATC	4 cut(s)	100, 303, 476, 604
MaeI	CTAG	2 cut(s)	386, 432
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	6 cut(s)	136, 239, 263, 341, 358, 439
MalI	GATC	2 cut(s)	391, 491
MboI	GATC	2 cut(s)	389, 489
MboII	GAAGA	2 cut(s)	76, 384
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	3 cut(s)	75, 247, 554
MnlI	CCTC	1 cut(s)	421
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	368, 575
MspI	CCGG	3 cut(s)	282, 311, 447
MspR9I	CCNGG	3 cut(s)	282, 283, 528
Mva1269I	GAATGC	3 cut(s)	147, 416, 450
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	110, 173, 537
NciI	CCSGG	2 cut(s)	282, 283
NcoI	CCATGG	1 cut(s)	618
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	2 cut(s)	389, 489
NlaIII	CATG	2 cut(s)	101, 622
NmuCI	GTSAC	3 cut(s)	136, 341, 358
NspV	TTCGAA	1 cut(s)	87
OliI	CACNNNNGTG	2 cut(s)	368, 575
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	3 cut(s)	147, 416, 450
PfeI	GAWTC	3 cut(s)	129, 476, 626
PkrI	GCNGC	5 cut(s)	30, 103, 190, 640, 659
Psp6I	CCWGG	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	526
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	389
RseI	CAYNNNNRTG	2 cut(s)	368, 575
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	5 cut(s)	29, 102, 189, 639, 658
Sau3AI	GATC	2 cut(s)	389, 489
ScrFI	CCNGG	3 cut(s)	282, 283, 528
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	9 cut(s)	23, 94, 190, 223, 279, 360, 406, 446, 599
SfaNI	GCATC	4 cut(s)	100, 303, 476, 604
SfcI	CTRYAG	1 cut(s)	26
SfuI	TTCGAA	1 cut(s)	87
SmaI	CCCGGG	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	368, 575
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	75, 247, 554
SsiI	CCGC	2 cut(s)	657, 660
SspMI	CTAG	2 cut(s)	386, 432
StyD4I	CCNGG	3 cut(s)	280, 281, 526
StyI	CCWWGG	2 cut(s)	385, 618
TaaI	ACNGT	3 cut(s)	239, 367, 574
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	4 cut(s)	87, 108, 407, 624
TasI	AATT	3 cut(s)	75, 247, 554
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	129, 476, 626
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	538, 565
TseFI	GTSAC	3 cut(s)	136, 341, 358
TseI	GCWGC	4 cut(s)	28, 101, 188, 638
Tsp45I	GTSAC	3 cut(s)	136, 341, 358
TspDTI	ATGAA	2 cut(s)	332, 384
TspGWI	ACGGA	1 cut(s)	600
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	2 cut(s)	538, 565
XmaI	CCCGGG	1 cut(s)	281
XmaJI	CCTAGG	1 cut(s)	385
XspI	CTAG	2 cut(s)	386, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.