Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00129

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

21529 .. 22497

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAGTATCGTACTGGATTGCAATCATTCTATCACTTTTAGCAACAATTGACAACCATGTATTTCTACTGGAAGCTTCAGACGTAGGAGTTTGCTATGGAACGTTAGGGAATGACCTCCCTGCAGCAACAGAAGTTGTCAAACTCTACAAGAAACATAGTATCACCAAAATGAGGCTTTTTGATCCAAACACAGCAGCCCTTCAGGCACTGAAAGGGAGCGGAATCAGTGTTATACTTGGCATTCAAAACCAATACTTACCCGCACTGGCAGCAAGTCAAGAAGCTGTGAACGCATGGTTCACCACCAATGAGGTTATTCCCGGGCCCTTAGGCAACTACATTTTTCCTGTAATGAGGTTTTTACGGACTATGCTTGATGGCAGAGAGCTGAGTGGGATTAAGGTGACCACAGTTGTTCCAGGAACTACCTTAGGATCTTCATACCCGCCTTCAAGTGGTGTATTCGCAGCGGAGGCTGTTGAAGTCATGACCAGCATTGTTCAATTTTTAGCGTCAACCAATTCATCTCTTATGATCAATGCGTACCCTTACTTTGCCTACAAGTCAGACCCTGCCAATGTTCACTTGGACTATGCTCTATTCACTACTAAAACCTCGGTGATTCAAGATGGACCACTCGGCTACTACAACCTGTTGGATGCCATAGTGGATTCGTTTTACACGGCAATGGAGAAAGTAGGCAGCCCTAATGTCACGGTTGTGGTGTCTGAAAGTGGTTGGCCTTCTGCTGGGAGCGGACAGTTCACCACCCCAGAACTTGCAGGGACATATAACAGGAATTTCATCAAACACATCAGTTCAAGGGTAGGAACACCAAAAAGACCTGATCAATTCATTGAAGGATACGTCTTTGCCATGTTCAATGAGAATCAGAAACCTGAGGGTGAGGAGCAGCATTTTGGTCTTTTTAATCCTAACATGGAACCTGTTTATCCTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

322

Amino Acids

35.1

Weight (kDa)

5.13

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 104	1.3e-17	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	103 - 321	4.6e-64	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	222, 759
AciI	CCGC	5 cut(s)	222, 264, 449, 473, 759
AclI	AACGTT	1 cut(s)	104
AclWI	GGATC	2 cut(s)	179, 445
AcsI	RAATTY	1 cut(s)	802
AcuI	CTGAAG	2 cut(s)	63, 188
AfaI	GTAC	2 cut(s)	14, 548
AfiI	CCNNNNNNNGG	3 cut(s)	174, 458, 752
AgsI	TTSAA	8 cut(s)	248, 456, 485, 506, 629, 825, 863, 886
AjnI	CCWGG	1 cut(s)	421
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	3 cut(s)	77, 287, 391
AluI	AGCT	3 cut(s)	77, 287, 391
AlwI	GGATC	2 cut(s)	179, 445
AlwNI	CAGNNNCTG	2 cut(s)	211, 575
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	326, 743
ApaI	GGGCCC	1 cut(s)	330
ApeKI	GCWGC	6 cut(s)	125, 197, 272, 470, 705, 916
ApoI	RAATTY	1 cut(s)	802
AspS9I	GGNCC	3 cut(s)	326, 327, 635
AsuC2I	CCSGG	2 cut(s)	324, 325
AsuHPI	GGTGA	6 cut(s)	157, 295, 418, 634, 760, 920
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	635
AxyI	CCTNAGG	3 cut(s)	331, 433, 903
BaeGI	GKGCMC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	330
BbvI	GCAGC	6 cut(s)	137, 209, 284, 482, 717, 928
BccI	CCATC	2 cut(s)	374, 626
BceAI	ACGGC	1 cut(s)	702
BciT130I	CCWGG	1 cut(s)	423
BciVI	GTATCC	1 cut(s)	860
BclI	TGATCA	2 cut(s)	537, 850
BcnI	CCSGG	2 cut(s)	324, 325
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	860
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	6 cut(s)	126, 198, 273, 471, 706, 917
BlsI	GCNGC	6 cut(s)	127, 199, 274, 472, 707, 918
Bme1390I	CCNGG	3 cut(s)	324, 325, 423
Bme18I	GGWCC	1 cut(s)	635
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	3 cut(s)	326, 327, 635
BmiI	GGNNCC	2 cut(s)	328, 948
BmrFI	CCNGG	3 cut(s)	324, 325, 423
BmsI	GCATC	1 cut(s)	652
BpuMI	CCSGG	2 cut(s)	324, 325
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	323, 618
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 458, 752
Bse1I	ACTGG	3 cut(s)	20, 75, 273
Bse21I	CCTNAGG	3 cut(s)	331, 433, 903
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	323, 618
BseGI	GGATG	1 cut(s)	667
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	3 cut(s)	174, 458, 752
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	2 cut(s)	383, 894
BseNI	ACTGG	3 cut(s)	20, 75, 273
BseRI	GAGGAG	1 cut(s)	926
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	6 cut(s)	137, 209, 284, 482, 717, 928
BseYI	CCCAGC	1 cut(s)	752
BshFI	GGCC	2 cut(s)	328, 745
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	3 cut(s)	174, 458, 752
BsmFI	GGGAC	1 cut(s)	802
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	328, 745
BsoBI	CYCGRG	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	184, 437, 537, 850
BspACI	CCGC	5 cut(s)	222, 264, 449, 473, 759
BspANI	GGCC	2 cut(s)	328, 745
BspCNI	CTCAG	2 cut(s)	384, 895
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	328, 948
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	2 cut(s)	179, 445
BsrBI	CCGCTC	2 cut(s)	222, 759
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	20, 75, 273
BssECI	CCNNGG	2 cut(s)	323, 618
BssMI	GATC	4 cut(s)	184, 437, 537, 850
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	415, 721, 765
BstDEI	CTNAG	4 cut(s)	331, 392, 433, 903
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	4 cut(s)	187, 440, 540, 853
BstMBI	GATC	4 cut(s)	184, 437, 537, 850
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 476
BstNI	CCWGG	1 cut(s)	423
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	3 cut(s)	322, 323, 421
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	6 cut(s)	137, 209, 284, 482, 717, 928
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
Bsu36I	CCTNAGG	3 cut(s)	331, 433, 903
BsuI	GTATCC	1 cut(s)	860
BsuRI	GGCC	2 cut(s)	328, 745
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	3 cut(s)	209, 235, 266
CaiI	CAGNNNCTG	2 cut(s)	211, 575
CciI	TCATGA	1 cut(s)	489
Cfr13I	GGNCC	3 cut(s)	326, 327, 635
Cfr9I	CCCGGG	1 cut(s)	323
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	13, 547
CviAII	CATG	5 cut(s)	59, 297, 490, 880, 943
CviQI	GTAC	2 cut(s)	13, 547
DdeI	CTNAG	4 cut(s)	331, 392, 433, 903
DpnI	GATC	4 cut(s)	186, 439, 539, 852
DpnII	GATC	4 cut(s)	184, 437, 537, 850
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	2 cut(s)	63, 188
Eco81I	CCTNAGG	3 cut(s)	331, 433, 903
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	406
EcoO109I	RGGNCCY	1 cut(s)	327
EcoO65I	GGTNACC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	5 cut(s)	62, 300, 493, 883, 946
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	5 cut(s)	58, 296, 489, 879, 942
FauI	CCCGC	2 cut(s)	271, 456
FbaI	TGATCA	2 cut(s)	537, 850
Fnu4HI	GCNGC	6 cut(s)	126, 198, 273, 471, 706, 917
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	6 cut(s)	126, 198, 273, 471, 706, 917
GluI	GCNGC	6 cut(s)	126, 198, 273, 471, 706, 917
GsaI	CCCAGC	1 cut(s)	756
HaeIII	GGCC	2 cut(s)	328, 745
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	1 cut(s)	504
Hin1II	CATG	5 cut(s)	62, 300, 493, 883, 946
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	4 cut(s)	225, 625, 674, 892
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	6 cut(s)	157, 295, 418, 634, 760, 920
Hpy166II	GTNNAC	5 cut(s)	292, 303, 519, 586, 768
Hpy188I	TCNGA	4 cut(s)	82, 571, 733, 897
Hpy188III	TCNNGA	3 cut(s)	281, 490, 629
Hpy8I	GTNNAC	5 cut(s)	292, 303, 519, 586, 768
HpyAV	CCTTC	4 cut(s)	212, 462, 756, 857
HpyCH4III	ACNGT	3 cut(s)	415, 721, 765
HpyCH4IV	ACGT	3 cut(s)	84, 104, 870
HpyCH4V	TGCA	3 cut(s)	23, 125, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 476
HpyF3I	CTNAG	4 cut(s)	331, 392, 433, 903
HpySE526I	ACGT	3 cut(s)	84, 104, 870
Hsp92II	CATG	5 cut(s)	62, 300, 493, 883, 946
Ksp22I	TGATCA	2 cut(s)	537, 850
Kzo9I	GATC	4 cut(s)	184, 437, 537, 850
LmnI	GCTCC	3 cut(s)	219, 756, 913
Lsp1109I	GCAGC	6 cut(s)	137, 209, 284, 482, 717, 928
LweI	GCATC	1 cut(s)	652
MaeII	ACGT	3 cut(s)	84, 104, 870
MaeIII	GTNAC	2 cut(s)	406, 715
MalI	GATC	4 cut(s)	186, 439, 539, 852
MbiI	CCGCTC	2 cut(s)	222, 759
MboI	GATC	4 cut(s)	184, 437, 537, 850
MboII	GAAGA	1 cut(s)	432
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	5 cut(s)	48, 506, 523, 802, 854
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	8 cut(s)	128, 168, 307, 351, 469, 628, 898, 904
MseI	TTAA	2 cut(s)	402, 933
MslI	CAYNNNNRTG	3 cut(s)	170, 689, 722
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	3 cut(s)	324, 325, 423
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 476
NciI	CCSGG	2 cut(s)	324, 325
NdeII	GATC	4 cut(s)	184, 437, 537, 850
NlaIII	CATG	5 cut(s)	62, 300, 493, 883, 946
NlaIV	GGNNCC	2 cut(s)	328, 948
NmeAIII	GCCGAG	1 cut(s)	621
NmuCI	GTSAC	2 cut(s)	406, 715
OliI	CACNNNNGTG	1 cut(s)	722
PagI	TCATGA	1 cut(s)	489
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	4 cut(s)	225, 625, 674, 892
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	6 cut(s)	127, 199, 274, 472, 707, 918
Psp1406I	AACGTT	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	421
PspEI	GGTNACC	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	328, 948
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	3 cut(s)	326, 327, 635
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	2 cut(s)	211, 575
PsuI	RGATCY	1 cut(s)	437
RsaI	GTAC	2 cut(s)	14, 548
RsaNI	GTAC	2 cut(s)	13, 547
RseI	CAYNNNNRTG	3 cut(s)	170, 689, 722
SaqAI	TTAA	2 cut(s)	402, 933
SatI	GCNGC	6 cut(s)	126, 198, 273, 471, 706, 917
Sau3AI	GATC	4 cut(s)	184, 437, 537, 850
Sau96I	GGNCC	3 cut(s)	326, 327, 635
ScrFI	CCNGG	3 cut(s)	324, 325, 423
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	635
SmaI	CCCGGG	1 cut(s)	325
SmiMI	CAYNNNNRTG	3 cut(s)	170, 689, 722
Sse9I	AATT	5 cut(s)	48, 506, 523, 802, 854
SsiI	CCGC	5 cut(s)	222, 264, 449, 473, 759
StyD4I	CCNGG	3 cut(s)	322, 323, 421
TaaI	ACNGT	3 cut(s)	415, 721, 765
TaiI	ACGT	3 cut(s)	87, 107, 873
TasI	AATT	5 cut(s)	48, 506, 523, 802, 854
TfiI	GAWTC	4 cut(s)	225, 625, 674, 892
Tru1I	TTAA	2 cut(s)	402, 933
Tru9I	TTAA	2 cut(s)	402, 933
TscAI	CASTG	3 cut(s)	216, 235, 273
TseFI	GTSAC	2 cut(s)	406, 715
TseI	GCWGC	6 cut(s)	125, 197, 272, 470, 705, 916
Tsp45I	GTSAC	2 cut(s)	406, 715
TspDTI	ATGAA	4 cut(s)	432, 516, 796, 847
TspGWI	ACGGA	1 cut(s)	382
TspMI	CCCGGG	1 cut(s)	323
TspRI	CASTG	3 cut(s)	216, 235, 273
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmaI	CCCGGG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.