Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

3347952 .. 3349188

Gene Structure 1237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCGGTACTTGGATGCATTGCTCTCATTTTGTGTGTTTTAGCAAACTTTGACAACTATGCAGGCCGTGTGGGAGCTTTAGACATCGGTGTTTGCTATGGGACGTTAGGAAGTGACCTTCCTGCACCAGCAGATGTTGTCAATATCTACAAACAACACGGCATAGCGAAAATGAGGCTCTTCAATCCAAACCCTGCAGTACTTGACGTCCTGAAAGGGAGTGGAATCGGTGTCACTATCGGCATTGCAAACGAGGACTTGGAGAATTTGGCAACAGGCCAAGCTGCTGTTGAGACATGGTTCAATAACAATATAGCTCATTATGTAAATGACGTTACCATCAATTACATCGCCGTCGGCAATGAGGCCGACCGGTCAGGGGGCCTCAAAAATATCTTCACGGTGATGCCGTTGTTAAATAACGTAGTCCGTGACAAAGGGATCAAGGTGACCACAGTTCTGTCATCATCTGTCCTAGCATCTTCGTACCCGCCTTCAAGTGGTGCATTCACACTAGAGGCTTATAGTACAATGGCCGGCATTCTTGCGTTTCTAGCATCCACTGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAGACCCTGGCAATGTTCGATTAGACTATGCACAATTCACTGCAACCGAGACGGTGGTTCAAGACGGGGAATATAGCTACGTCAACCTGTTTGATGCCATTGTAGATGCTTTTATTGCAGCCATGGACAAAGCAGGCGGTGCAAATAATATTAGAGTTGTGGTGTCTGAAAGTGGTTGGCCTTCTGATGGTAGCGGAAGTATCACCACGCCAGAACTCGCAGCCACTTATAACAAGAATTTGTTGAATCATATTCTTAAAAAGGGAGGGACACCAAGAAGACCTGGTTCAAACATTGAAGGGTTTATCTTTGCCATGTTCAATGAGAATCAGAAACCTGCTGGCGAGGAGCAACACTTTGGTCTTTTTTATCCCACCATGCAACCTGTTTATGATGTATTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

339

Amino Acids

36.15

Weight (kDa)

4.76

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 336	3.1e-88	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AatII	GACGTC	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	955
AciI	CCGC	4 cut(s)	5, 491, 747, 804
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	265, 847
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	4 cut(s)	9, 201, 488, 529
AfiI	CCNNNNNNNGG	3 cut(s)	379, 500, 797
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	8 cut(s)	184, 304, 498, 671, 856, 900, 908, 931
AjnI	CCWGG	2 cut(s)	616, 892
AluBI	AGCT	4 cut(s)	77, 284, 317, 687
AluI	AGCT	4 cut(s)	77, 284, 317, 687
Alw26I	GTCTC	2 cut(s)	287, 653
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	6 cut(s)	64, 277, 366, 382, 534, 788
ApeKI	GCWGC	3 cut(s)	284, 728, 830
ApoI	RAATTY	2 cut(s)	265, 847
AsiGI	ACCGGT	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	3 cut(s)	415, 460, 805
BbsI	GAAGAC	1 cut(s)	895
BbvI	GCAGC	3 cut(s)	271, 740, 842
BccI	CCATC	2 cut(s)	347, 791
BceAI	ACGGC	4 cut(s)	51, 175, 338, 394
BciT130I	CCWGG	2 cut(s)	618, 894
BciVI	GTATCC	1 cut(s)	600
BclI	TGATCA	1 cut(s)	579
BcoDI	GTCTC	2 cut(s)	287, 653
BfaI	CTAG	3 cut(s)	476, 515, 554
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	955
BfuI	GTATCC	1 cut(s)	600
BisI	GCNGC	3 cut(s)	285, 729, 831
BlsI	GCNGC	3 cut(s)	286, 730, 832
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	618, 894
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	2 cut(s)	618, 894
BmsI	GCATC	6 cut(s)	5, 396, 488, 566, 694, 706
BpiI	GAAGAC	1 cut(s)	895
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	616, 732
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 500, 797
Bse118I	RCCGGY	2 cut(s)	372, 536
Bse3DI	GCAATG	4 cut(s)	18, 243, 367, 628
BseBI	CCWGG	2 cut(s)	618, 894
BseDI	CCNNGG	2 cut(s)	616, 732
BseGI	GGATG	2 cut(s)	20, 557
BseLI	CCNNNNNNNGG	3 cut(s)	379, 500, 797
BseMI	GCAATG	4 cut(s)	18, 243, 367, 628
BseRI	GAGGAG	1 cut(s)	971
BseXI	GCAGC	3 cut(s)	271, 740, 842
BsgI	GTGCAG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	6 cut(s)	66, 279, 368, 384, 536, 790
BshTI	ACCGGT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	373, 537
BslFI	GGGAC	2 cut(s)	115, 892
BslI	CCNNNNNNNGG	3 cut(s)	379, 500, 797
BsmAI	GTCTC	2 cut(s)	287, 653
BsmBI	CGTCTC	1 cut(s)	653
BsmFI	GGGAC	2 cut(s)	115, 892
BsmI	GAATGC	2 cut(s)	506, 540
BsnI	GGCC	6 cut(s)	66, 279, 368, 384, 536, 790
Bsp143I	GATC	2 cut(s)	441, 579
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	4 cut(s)	5, 491, 747, 804
BspANI	GGCC	6 cut(s)	66, 279, 368, 384, 536, 790
BspLI	GGNNCC	1 cut(s)	383
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	4 cut(s)	18, 243, 367, 628
BsrFI	RCCGGY	2 cut(s)	372, 536
BssAI	RCCGGY	2 cut(s)	372, 536
BssECI	CCNNGG	2 cut(s)	616, 732
BssMI	GATC	2 cut(s)	441, 579
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	618, 894
Bst4CI	ACNGT	3 cut(s)	403, 457, 664
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstC8I	GCNNGC	4 cut(s)	64, 538, 745, 952
BstDSI	CCRYGG	1 cut(s)	732
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	2 cut(s)	20, 557
BstKTI	GATC	2 cut(s)	444, 582
BstMAI	GTCTC	2 cut(s)	287, 653
BstMBI	GATC	2 cut(s)	441, 579
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 725, 749
BstNI	CCWGG	2 cut(s)	618, 894
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	616, 892
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	271, 740, 842
BstV2I	GAAGAC	1 cut(s)	895
BsuI	GTATCC	1 cut(s)	600
BsuRI	GGCC	6 cut(s)	66, 279, 368, 384, 536, 790
BtgI	CCRYGG	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	20, 557
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	561, 648
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	4 cut(s)	64, 538, 745, 952
CaiI	CAGNNNCTG	1 cut(s)	617
Cfr10I	RCCGGY	2 cut(s)	372, 536
Cfr13I	GGNCC	1 cut(s)	382
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	4 cut(s)	8, 200, 487, 528
CspAI	ACCGGT	1 cut(s)	372
CviAII	CATG	4 cut(s)	297, 733, 925, 988
CviQI	GTAC	4 cut(s)	8, 200, 487, 528
DpnI	GATC	2 cut(s)	443, 581
DpnII	GATC	2 cut(s)	441, 579
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	732
Eco91I	GGTNACC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	616, 892
EcoT14I	CCWWGG	1 cut(s)	732
EcoT22I	ATGCAT	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	732
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	4 cut(s)	300, 736, 928, 991
FaqI	GGGAC	2 cut(s)	115, 892
FatI	CATG	4 cut(s)	296, 732, 924, 987
FauI	CCCGC	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	3 cut(s)	285, 729, 831
FokI	GGATG	2 cut(s)	27, 544
Fsp4HI	GCNGC	3 cut(s)	285, 729, 831
FspBI	CTAG	3 cut(s)	476, 515, 554
GluI	GCNGC	3 cut(s)	285, 729, 831
HaeIII	GGCC	6 cut(s)	66, 279, 368, 384, 536, 790
HapII	CCGG	2 cut(s)	373, 537
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	300, 736, 928, 991
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	4 cut(s)	225, 566, 856, 937
HpaII	CCGG	2 cut(s)	373, 537
HphI	GGTGA	3 cut(s)	415, 460, 805
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	4 cut(s)	613, 778, 796, 942
Hpy188III	TCNNGA	3 cut(s)	211, 671, 1014
Hpy8I	GTNNAC	1 cut(s)	694
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	4 cut(s)	128, 504, 801, 902
HpyCH4III	ACNGT	3 cut(s)	403, 457, 664
HpyCH4IV	ACGT	5 cut(s)	104, 207, 333, 423, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 725, 749
HpySE526I	ACGT	5 cut(s)	104, 207, 333, 423, 690
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	300, 736, 928, 991
KroI	GCCGGC	1 cut(s)	536
KroNI	GCCGGC	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	2 cut(s)	441, 579
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	74, 958
Lsp1109I	GCAGC	3 cut(s)	271, 740, 842
LweI	GCATC	6 cut(s)	5, 396, 488, 566, 694, 706
MabI	ACCWGGT	1 cut(s)	892
MaeI	CTAG	3 cut(s)	476, 515, 554
MaeII	ACGT	5 cut(s)	104, 207, 333, 423, 690
MaeIII	GTNAC	5 cut(s)	113, 232, 334, 431, 448
MalI	GATC	2 cut(s)	443, 581
MboI	GATC	2 cut(s)	441, 579
MboII	GAAGA	4 cut(s)	172, 388, 474, 900
MluCI	AATT	4 cut(s)	265, 343, 644, 847
MnlI	CCTC	7 cut(s)	168, 247, 358, 395, 511, 869, 949
Mph1103I	ATGCAT	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	536
MseI	TTAA	2 cut(s)	416, 867
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	2 cut(s)	373, 537
MspR9I	CCNGG	2 cut(s)	618, 894
Mva1269I	GAATGC	2 cut(s)	506, 540
MvaI	CCWGG	2 cut(s)	618, 894
MwoI	GCNNNNNNNGC	3 cut(s)	554, 725, 749
NaeI	GCCGGC	1 cut(s)	538
NcoI	CCATGG	1 cut(s)	732
NdeII	GATC	2 cut(s)	441, 579
NgoMIV	GCCGGC	1 cut(s)	536
NlaIII	CATG	4 cut(s)	300, 736, 928, 991
NlaIV	GGNNCC	1 cut(s)	383
NmuCI	GTSAC	4 cut(s)	113, 232, 431, 448
NsiI	ATGCAT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	2 cut(s)	506, 540
PdiI	GCCGGC	1 cut(s)	538
PfeI	GAWTC	4 cut(s)	225, 566, 856, 937
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	286, 730, 832
PsiI	TTATAA	1 cut(s)	840
Psp6I	CCWGG	2 cut(s)	616, 892
PspEI	GGTNACC	1 cut(s)	448
PspGI	CCWGG	2 cut(s)	616, 892
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	617
RsaI	GTAC	4 cut(s)	9, 201, 488, 529
RsaNI	GTAC	4 cut(s)	8, 200, 487, 528
RseI	CAYNNNNRTG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	416, 867
SatI	GCNGC	3 cut(s)	285, 729, 831
Sau3AI	GATC	2 cut(s)	441, 579
Sau96I	GGNCC	1 cut(s)	382
ScaI	AGTACT	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	618, 894
SexAI	ACCWGGT	1 cut(s)	892
SfaNI	GCATC	6 cut(s)	5, 396, 488, 566, 694, 706
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse9I	AATT	4 cut(s)	265, 343, 644, 847
SsiI	CCGC	4 cut(s)	5, 491, 747, 804
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	3 cut(s)	476, 515, 554
StyD4I	CCNGG	2 cut(s)	616, 892
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	3 cut(s)	403, 457, 664
TaiI	ACGT	5 cut(s)	107, 210, 336, 426, 693
TaqI	TCGA	1 cut(s)	628
TasI	AATT	4 cut(s)	265, 343, 644, 847
TatI	WGTACW	2 cut(s)	199, 527
TfiI	GAWTC	4 cut(s)	225, 566, 856, 937
Tru1I	TTAA	2 cut(s)	416, 867
Tru9I	TTAA	2 cut(s)	416, 867
TscAI	CASTG	2 cut(s)	568, 655
TseFI	GTSAC	4 cut(s)	113, 232, 431, 448
TseI	GCWGC	3 cut(s)	284, 728, 830
Tsp45I	GTSAC	4 cut(s)	113, 232, 431, 448
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	568, 655
XapI	RAATTY	2 cut(s)	265, 847
XspI	CTAG	3 cut(s)	476, 515, 554
ZraI	GACGTC	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.