Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

4519684 .. 4520703

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAGTACTAGGCTGCATTGCACTCATTCTGTGTGTTATAGCTAGCTTTGACAACCATGCAGGCCGTGTGGGAGCTTTAGACATTGGTGTTTGCTATGGGACGTTGGGAAGTGACCTTCCTGCACCAGCAGATGTTGTCAATCTCTACAAACAACACGGCATAGCGAAAATGAGGATCTTCAATCCTAACCCCGCAATACTTGACGCCCTGAGAGGGAGTGGAATCGCTGTCACCATAGGCATTCCAAATGAGGACTTGGAGAATTTGGCAACTGGTCAAGGTGCTGTGGACCAATGGTGGAATAACAATATAGCTCCTTATGTAAATGACGTTACCATCAATTACATCGCCATTGGCAACGAGGTCGACCCATCAGTAGGCCTAAAAAATGTCCTCGCGGTGATGCCGTTGTTAAATAACATACAGATTGTTCATGACAGGATCAAGGTGACAACAGTTCTGTCATCATCTGTCCTAGCATCTTCGTACCCGCCTTCGATTGGTGAATTCACACCAGAGGCTTCTAGTACAATGGCCGGCATTCTTGCGTTTCTAGCATCAACAGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAGACCCTGGCAATGTTCGATTAGACTATGCTCAATTCACTGCAACAGAGACTGTGGTTCAAGACGGGGAATATGGCTACGTCAATCTGTTTGATGCCATTGTGGATGCTTTTGTTGCAGCGATGGACAAAGCAGGCGGTGCAACTAATGTTAGAGTTGTGGTGTCTGAAAGTGGCTGGCCTTCTGATGGTAGCGGAAGTATCACCACGCCAGAACTTGCAGCCACTTATAACAAGAATTTATTGAATCATATCCTTCAAAAGGGAGGGACACCAAGAAGACCCGGTGCAAACATTGAAGGGTTTATCTTTGCAATGTTCAATGAGAACCAGAAACCTGCTGGCGAGGAGCAACATTTTGGTCTTTTTTATCCCAACATGCAACCTGTTTATGATATATTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

340

Amino Acids

36.24

Weight (kDa)

4.56

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 337	7.4e-91	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	958
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	401
AciI	CCGC	5 cut(s)	195, 401, 494, 750, 807
AclWI	GGATC	2 cut(s)	185, 452
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	265, 509, 850
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	3 cut(s)	9, 491, 532
AfiI	CCNNNNNNNGG	5 cut(s)	216, 380, 503, 800, 874
AgsI	TTSAA	6 cut(s)	184, 674, 859, 872, 911, 934
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	4 cut(s)	44, 48, 77, 317
AluI	AGCT	4 cut(s)	44, 48, 77, 317
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	2 cut(s)	185, 452
AlwNI	CAGNNNCTG	2 cut(s)	620, 665
AoxI	GGCC	4 cut(s)	64, 382, 537, 791
ApeKI	GCWGC	3 cut(s)	15, 731, 833
ApoI	RAATTY	3 cut(s)	265, 509, 850
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	5 cut(s)	226, 415, 463, 518, 808
AsuNHI	GCTAGC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	898
BbvI	GCAGC	3 cut(s)	2, 743, 845
BccI	CCATC	4 cut(s)	347, 382, 730, 794
BceAI	ACGGC	3 cut(s)	51, 175, 394
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	1 cut(s)	603
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	5 cut(s)	11, 45, 479, 528, 557
BfuAI	ACCTGC	1 cut(s)	958
BfuI	GTATCC	1 cut(s)	603
BisI	GCNGC	3 cut(s)	16, 732, 834
BlsI	GCNGC	3 cut(s)	17, 733, 835
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	621, 897
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	621, 897
BmsI	GCATC	5 cut(s)	396, 491, 569, 697, 709
BmtI	GCTAGC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	898
BpuMI	CCSGG	1 cut(s)	897
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	619
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 380, 503, 800, 874
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	3 cut(s)	18, 631, 933
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	5 cut(s)	216, 380, 503, 800, 874
BseMI	GCAATG	3 cut(s)	18, 631, 933
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	974
BseXI	GCAGC	3 cut(s)	2, 743, 845
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	66, 384, 539, 793
BsiSI	CCGG	2 cut(s)	540, 897
BslFI	GGGAC	2 cut(s)	115, 895
BslI	CCNNNNNNNGG	5 cut(s)	216, 380, 503, 800, 874
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	115, 895
BsmI	GAATGC	2 cut(s)	243, 543
BsnI	GGCC	4 cut(s)	66, 384, 539, 793
Bsp143I	GATC	3 cut(s)	177, 444, 582
BspACI	CCGC	5 cut(s)	195, 401, 494, 750, 807
BspANI	GGCC	4 cut(s)	66, 384, 539, 793
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	401
BspHI	TCATGA	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	958
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	185, 452
BsrDI	GCAATG	3 cut(s)	18, 631, 933
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	3 cut(s)	177, 444, 582
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	460, 667
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	6 cut(s)	46, 64, 541, 748, 791, 955
BstDEI	CTNAG	1 cut(s)	212
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	3 cut(s)	180, 447, 585
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	3 cut(s)	177, 444, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 728, 752
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	994
BstSCI	CCNGG	2 cut(s)	619, 895
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	2, 743, 845
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	4 cut(s)	66, 384, 539, 793
BtgZI	GCGATG	2 cut(s)	334, 749
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	651
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	6 cut(s)	46, 64, 541, 748, 791, 955
CaiI	CAGNNNCTG	2 cut(s)	620, 665
CciI	TCATGA	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	8, 490, 531
CviAII	CATG	3 cut(s)	59, 437, 991
CviQI	GTAC	3 cut(s)	8, 490, 531
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	3 cut(s)	179, 446, 584
DpnII	GATC	3 cut(s)	177, 444, 582
EaeI	YGGCCR	1 cut(s)	537
Eco147I	AGGCCT	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	619
FaeI	CATG	3 cut(s)	62, 440, 994
FaqI	GGGAC	2 cut(s)	115, 895
FatI	CATG	3 cut(s)	58, 436, 990
FauI	CCCGC	2 cut(s)	202, 501
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	16, 732, 834
FokI	GGATG	1 cut(s)	731
Fsp4HI	GCNGC	3 cut(s)	16, 732, 834
FspBI	CTAG	5 cut(s)	11, 45, 479, 528, 557
GluI	GCNGC	3 cut(s)	16, 732, 834
HaeIII	GGCC	4 cut(s)	66, 384, 539, 793
HapII	CCGG	2 cut(s)	540, 897
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	62, 440, 994
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	225, 569, 859
HpaII	CCGG	2 cut(s)	540, 897
HphI	GGTGA	5 cut(s)	226, 415, 463, 518, 808
Hpy166II	GTNNAC	2 cut(s)	292, 370
Hpy188I	TCNGA	3 cut(s)	616, 781, 799
Hpy188III	TCNNGA	3 cut(s)	437, 674, 1017
Hpy8I	GTNNAC	2 cut(s)	292, 370
HpyAV	CCTTC	5 cut(s)	128, 507, 804, 878, 905
HpyCH4III	ACNGT	2 cut(s)	460, 667
HpyCH4IV	ACGT	3 cut(s)	104, 333, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 728, 752
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	3 cut(s)	104, 333, 693
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	62, 440, 994
KroI	GCCGGC	1 cut(s)	539
KroNI	GCCGGC	1 cut(s)	541
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	3 cut(s)	177, 444, 582
LmnI	GCTCC	3 cut(s)	74, 322, 961
Lsp1109I	GCAGC	3 cut(s)	2, 743, 845
LweI	GCATC	5 cut(s)	396, 491, 569, 697, 709
MaeI	CTAG	5 cut(s)	11, 45, 479, 528, 557
MaeII	ACGT	3 cut(s)	104, 333, 693
MaeIII	GTNAC	4 cut(s)	113, 232, 334, 451
MalI	GATC	3 cut(s)	179, 446, 584
MboI	GATC	3 cut(s)	177, 444, 582
MboII	GAAGA	3 cut(s)	172, 477, 903
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	5 cut(s)	265, 343, 509, 647, 850
MnlI	CCTC	8 cut(s)	168, 209, 247, 358, 407, 514, 872, 952
MroNI	GCCGGC	1 cut(s)	539
MseI	TTAA	1 cut(s)	416
MspI	CCGG	2 cut(s)	540, 897
MspR9I	CCNGG	2 cut(s)	621, 897
Mva1269I	GAATGC	2 cut(s)	243, 543
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	557, 728, 752
NaeI	GCCGGC	1 cut(s)	541
NciI	CCSGG	1 cut(s)	897
NdeII	GATC	3 cut(s)	177, 444, 582
NgoMIV	GCCGGC	1 cut(s)	539
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	62, 440, 994
NmuCI	GTSAC	3 cut(s)	113, 232, 451
NspI	RCATGY	1 cut(s)	994
PagI	TCATGA	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	384
PctI	GAATGC	2 cut(s)	243, 543
PdiI	GCCGGC	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	225, 569, 859
PkrI	GCNGC	3 cut(s)	17, 733, 835
PsiI	TTATAA	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	292
PstNI	CAGNNNCTG	2 cut(s)	620, 665
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	9, 491, 532
RsaNI	GTAC	3 cut(s)	8, 490, 531
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	3 cut(s)	16, 732, 834
Sau3AI	GATC	3 cut(s)	177, 444, 582
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	2 cut(s)	621, 897
SfaNI	GCATC	5 cut(s)	396, 491, 569, 697, 709
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	5 cut(s)	265, 343, 509, 647, 850
SseBI	AGGCCT	1 cut(s)	384
SsiI	CCGC	5 cut(s)	195, 401, 494, 750, 807
SspMI	CTAG	5 cut(s)	11, 45, 479, 528, 557
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	619, 895
TaaI	ACNGT	2 cut(s)	460, 667
TaiI	ACGT	3 cut(s)	107, 336, 696
TaqI	TCGA	3 cut(s)	369, 500, 631
TasI	AATT	5 cut(s)	265, 343, 509, 647, 850
TatI	WGTACW	2 cut(s)	7, 530
TfiI	GAWTC	3 cut(s)	225, 569, 859
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	3 cut(s)	113, 232, 451
TseI	GCWGC	3 cut(s)	15, 731, 833
Tsp45I	GTSAC	3 cut(s)	113, 232, 451
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	872
XapI	RAATTY	3 cut(s)	265, 509, 850
XceI	RCATGY	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	5 cut(s)	11, 45, 479, 528, 557
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.