Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

31021102 .. 31022716

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1142800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCAATTTTGCAATGGATTGCGCTCATTCTGTCGTTTCTAGCAGCGATTCAAGGTGTTGTGGATGGTTATTCGGTTGACATTGGTGTTAACTATGGATTGTTAGGGGATGACCTGCCTAAACCTAGAGAAGTGGTTAACCTCTTCAAAGCGTATGGTATTGGCAAGGTAAGGCTGTTCAATCCTGATCCAGATGTACTCTGGGCACTGAGGGGGCAAGACATCGATGTCATGGTAGGCGTTCCTAATGAAAACTTAAACGCTTTGGCAGAAAACCAAGGTGCTGTGAACAACTGGTTTGATAACAATATAGAGCCCTACCTAAATGACGTTAACATCTACTTCATCACCGTTGGCAACGAGGTTATTCCCGGTCCCTTAGGAAACTCCGTTTGGCAAGTAATGCAGTATCTACAAAACATCCTCGACGAAAGGAGCTACCGTGGTATTAAAATCTCCACTGTTTTACCAGGGACTGCCTTAAAAACTTCATTTCCACCTTCAAAGGGTGAATTCAACGGACAGTCGAGCGGTGTCATGAGTTCCATTTGTGGGTTTTTACTTTTTCGAGGATCGCCACTTTTGATCAATGTGTATCCTTACTTTGCCTATGCATCAAACCCTACCAAAACTCCCTTGCAATATGCTCTATTTAATTCATCAACACCCGTACAAGACGGGAACTTGAGCTATTACAACCTGTTTGATGCCACCGTTGATGCTTTTATCTCAGCAATGGAGAGAGTCGGGGGAGCTGGTGTCGAGGTGGCGGTAACGGAGAGTGGCTGGCCTTCTGCCGGGAACGGAATTTTCACTAGTCCGGAGCTTGCTGGTACATATAACCGGAATTTCATGAAACACGTAACCTCCCTGAAAGGGACACCTAAACGACCTGGTCATTACATCGAAGGCTTTATCTTTGCCCTGTTCAACGAGAATCAGAAACCCGCTGGTGTGGAGCAAAACTTCGGACTGTTTTATCCTACCATGAAACCTGTTTACACTGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

338

Amino Acids

36.97

Weight (kDa)

4.93

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	28 - 336	2.6e-82	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	123
AccBSI	CCGCTC	1 cut(s)	531
AccIII	TCCGGA	1 cut(s)	820
AciI	CCGC	3 cut(s)	531, 770, 948
AclWI	GGATC	2 cut(s)	182, 580
AcsI	RAATTY	3 cut(s)	512, 807, 847
AfaI	GTAC	3 cut(s)	198, 672, 835
AfiI	CCNNNNNNNGG	4 cut(s)	506, 552, 797, 876
AflIII	ACRYGT	1 cut(s)	859
AgsI	TTSAA	6 cut(s)	53, 148, 181, 504, 517, 931
AhlI	ACTAGT	1 cut(s)	815
AjnI	CCWGG	2 cut(s)	469, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
AluBI	AGCT	4 cut(s)	438, 690, 755, 826
AluI	AGCT	4 cut(s)	438, 690, 755, 826
AlwI	GGATC	2 cut(s)	182, 580
AlwNI	CAGNNNCTG	1 cut(s)	476
Aor13HI	TCCGGA	1 cut(s)	820
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	3 cut(s)	512, 807, 847
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	372, 799
AsuHPI	GGTGA	2 cut(s)	340, 521
AvaII	GGWCC	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	471, 894
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	372, 799
BcuI	ACTAGT	1 cut(s)	815
BfaI	CTAG	3 cut(s)	41, 126, 816
BfuAI	ACCTGC	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	4 cut(s)	372, 471, 799, 894
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	4 cut(s)	372, 471, 799, 894
BmsI	GCATC	3 cut(s)	623, 697, 709
BpuEI	CTTGAG	1 cut(s)	706
BpuMI	CCSGG	2 cut(s)	372, 799
Bsa29I	ATCGAT	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	862
BsaJI	CCNNGG	3 cut(s)	277, 442, 470
BsaWI	WCCGGW	2 cut(s)	820, 843
BsaXI	ACNNNNNCTCC	8 cut(s)	427, 457, 616, 646, 744, 774, 851, 881
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 552, 797, 876
Bse1I	ACTGG	1 cut(s)	299
Bse21I	CCTNAGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	20, 741
BseAI	TCCGGA	1 cut(s)	820
BseBI	CCWGG	2 cut(s)	471, 894
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	277, 442, 470
BseGI	GGATG	3 cut(s)	70, 115, 420
BseLI	CCNNNNNNNGG	4 cut(s)	506, 552, 797, 876
BseMI	GCAATG	2 cut(s)	20, 741
BseMII	CTCAG	2 cut(s)	200, 744
BseNI	ACTGG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	790
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	4 cut(s)	372, 798, 821, 844
BslFI	GGGAC	3 cut(s)	360, 487, 892
BslI	CCNNNNNNNGG	4 cut(s)	506, 552, 797, 876
BsmFI	GGGAC	3 cut(s)	360, 487, 892
BsnI	GGCC	1 cut(s)	790
Bsp1286I	GDGCHC	2 cut(s)	208, 318
Bsp13I	TCCGGA	1 cut(s)	820
Bsp143I	GATC	3 cut(s)	187, 572, 585
BspACI	CCGC	3 cut(s)	531, 770, 948
BspANI	GGCC	1 cut(s)	790
BspCNI	CTCAG	2 cut(s)	201, 743
BspDI	ATCGAT	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	820
BspHI	TCATGA	2 cut(s)	537, 852
BspLI	GGNNCC	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	182, 580
BsrBI	CCGCTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	20, 741
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	277, 442, 470
BssMI	GATC	3 cut(s)	187, 572, 585
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	471, 894
Bst4CI	ACNGT	7 cut(s)	352, 443, 463, 525, 715, 975, 1006
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	862
BstC8I	GCNNGC	2 cut(s)	788, 828
BstDEI	CTNAG	3 cut(s)	209, 379, 730
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	70, 115, 420
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	190, 575, 588
BstMBI	GATC	3 cut(s)	187, 572, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	2 cut(s)	471, 894
BstSCI	CCNGG	4 cut(s)	370, 469, 797, 892
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	56
Bsu15I	ATCGAT	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	790
BsuTUI	ATCGAT	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	70, 115, 420
BtsIMutI	CAGTG	3 cut(s)	206, 459, 1002
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	788, 828
CaiI	CAGNNNCTG	1 cut(s)	476
CciI	TCATGA	2 cut(s)	537, 852
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	374
ClaI	ATCGAT	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	3 cut(s)	197, 671, 834
CviAII	CATG	4 cut(s)	232, 538, 853, 988
CviJI	RGCY	9 cut(s)	175, 316, 438, 690, 755, 786, 790, 826, 912
CviKI_1	RGCY	9 cut(s)	175, 316, 438, 690, 755, 786, 790, 826, 912
CviQI	GTAC	3 cut(s)	197, 671, 834
DdeI	CTNAG	3 cut(s)	209, 379, 730
DpnI	GATC	3 cut(s)	189, 574, 587
DpnII	GATC	3 cut(s)	187, 572, 585
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	469, 892
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	4 cut(s)	235, 541, 856, 991
FaqI	GGGAC	3 cut(s)	360, 487, 892
FatI	CATG	4 cut(s)	231, 537, 852, 987
FauI	CCCGC	1 cut(s)	955
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	3 cut(s)	77, 122, 407
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	3 cut(s)	41, 126, 816
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	790
HapII	CCGG	4 cut(s)	372, 798, 821, 844
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	4 cut(s)	235, 541, 856, 991
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	4 cut(s)	79, 91, 139, 334
HindII	GTYRAC	4 cut(s)	79, 91, 139, 334
HinfI	GANTC	3 cut(s)	49, 744, 937
HpaI	GTTAAC	3 cut(s)	91, 139, 334
HpaII	CCGG	4 cut(s)	372, 798, 821, 844
HphI	GGTGA	2 cut(s)	340, 521
Hpy166II	GTNNAC	6 cut(s)	79, 91, 139, 289, 334, 1000
Hpy188I	TCNGA	2 cut(s)	942, 971
Hpy188III	TCNNGA	5 cut(s)	185, 191, 538, 821, 853
Hpy8I	GTNNAC	6 cut(s)	79, 91, 139, 289, 334, 1000
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	510, 801, 902
HpyCH4III	ACNGT	7 cut(s)	352, 443, 463, 525, 715, 975, 1006
HpyCH4IV	ACGT	2 cut(s)	330, 861
HpyCH4V	TGCA	4 cut(s)	13, 406, 614, 640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	3 cut(s)	209, 379, 730
HpySE526I	ACGT	2 cut(s)	330, 861
Hsp92II	CATG	4 cut(s)	235, 541, 856, 991
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	820
Ksp22I	TGATCA	1 cut(s)	585
KspAI	GTTAAC	3 cut(s)	91, 139, 334
Kzo9I	GATC	3 cut(s)	187, 572, 585
LmnI	GCTCC	4 cut(s)	435, 752, 823, 958
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	3 cut(s)	623, 697, 709
MabI	ACCWGGT	1 cut(s)	892
MaeI	CTAG	3 cut(s)	41, 126, 816
MaeII	ACGT	2 cut(s)	330, 861
MaeIII	GTNAC	2 cut(s)	772, 862
MalI	GATC	3 cut(s)	189, 574, 587
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	3 cut(s)	187, 572, 585
MboII	GAAGA	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	208, 318
MluCI	AATT	5 cut(s)	6, 512, 655, 807, 847
MlyI	GAGTC	1 cut(s)	753
MnlI	CCTC	7 cut(s)	152, 204, 355, 434, 563, 757, 877
Mph1103I	ATGCAT	1 cut(s)	616
MroI	TCCGGA	1 cut(s)	820
MseI	TTAA	8 cut(s)	90, 138, 257, 333, 450, 482, 654, 1012
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	4 cut(s)	372, 798, 821, 844
MspR9I	CCNGG	4 cut(s)	372, 471, 799, 894
MvaI	CCWGG	2 cut(s)	471, 894
MwoI	GCNNNNNNNGC	1 cut(s)	403
NciI	CCSGG	2 cut(s)	372, 799
NdeII	GATC	3 cut(s)	187, 572, 585
NlaIII	CATG	4 cut(s)	235, 541, 856, 991
NlaIV	GGNNCC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	616
PagI	TCATGA	2 cut(s)	537, 852
PfeI	GAWTC	2 cut(s)	49, 937
PflFI	GACNNNGTC	1 cut(s)	894
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
Ppu21I	YACGTR	1 cut(s)	862
Psp6I	CCWGG	2 cut(s)	469, 892
PspGI	CCWGG	2 cut(s)	469, 892
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	374
PstNI	CAGNNNCTG	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	894
RsaI	GTAC	3 cut(s)	198, 672, 835
RsaNI	GTAC	3 cut(s)	197, 671, 834
SaqAI	TTAA	8 cut(s)	90, 138, 257, 333, 450, 482, 654, 1012
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	187, 572, 585
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	753
ScrFI	CCNGG	4 cut(s)	372, 471, 799, 894
SduI	GDGCHC	2 cut(s)	208, 318
SexAI	ACCWGGT	1 cut(s)	892
SfaNI	GCATC	3 cut(s)	623, 697, 709
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
SpeI	ACTAGT	1 cut(s)	815
Sse9I	AATT	5 cut(s)	6, 512, 655, 807, 847
SsiI	CCGC	3 cut(s)	531, 770, 948
SspMI	CTAG	3 cut(s)	41, 126, 816
StyD4I	CCNGG	4 cut(s)	370, 469, 797, 892
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	7 cut(s)	352, 443, 463, 525, 715, 975, 1006
TaiI	ACGT	2 cut(s)	333, 864
TaqI	TCGA	6 cut(s)	225, 426, 527, 568, 762, 906
TasI	AATT	5 cut(s)	6, 512, 655, 807, 847
TatI	WGTACW	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	49, 937
Tru1I	TTAA	8 cut(s)	90, 138, 257, 333, 450, 482, 654, 1012
Tru9I	TTAA	8 cut(s)	90, 138, 257, 333, 450, 482, 654, 1012
TscAI	CASTG	3 cut(s)	213, 466, 1009
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	7 cut(s)	264, 334, 480, 648, 841, 869, 1004
TspGWI	ACGGA	4 cut(s)	379, 534, 791, 819
TspRI	CASTG	3 cut(s)	213, 466, 1009
Tth111I	GACNNNGTC	1 cut(s)	894
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	3 cut(s)	512, 807, 847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XspI	CTAG	3 cut(s)	41, 126, 816
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.