Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

33089546 .. 33092104

Gene Structure 2559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTGGTGTTACTAGAAGTGGCCGCCCGTTGGAGGGAGGTATCAATGAAGGGTGGTGGTGGGAGGTGGCGTTGGTAGTTGGAGCACTCTGTGATCAAAAAGTGATGGCACCATTTCATTGGGTGATATTCATGCTTTCCATTGTATCAACTATTCACAACCATGCAGGCCTAGTGGAAGCTGCTACTTCTGCTCAGGACATAGGTGTTTGCTATGGAATGTTGGGGAACAACCTACCTCCTGCAACAGATGTCGTCAATCTCTACAAAAAATATGGCATTGGAAAGATGAGGTTGTTCGATCCTAACCCCGCCGCCCTCCAAGCTCTCAGGGGTAGCCAAATCCGTGTCACTCTTGGCATACGAAACGAAGACTTGTCCAACCTCGCTGCAAGTCCAGATGCCATGAACTCATGGTTCAAAACCAACGTTGAGCCTTACCTTAATGACATCACCTTCGAATACATCTCTGCTGGTAATGAGGTTATTCCCGGACCCTTGGGTGGGTACGTTTTGCCCCTAATGCAGTCGCTACAAAACATTCTCAATGCTAAGAACCTAGCTACTCGTATTAAGGTGTCAACAGTTGTGCCAGGAACTGTTTTGGGGGCTTCATATCCGCCTTCAAGTGGTGCATTTACAGCAGATACACGTGATGTTATGAGTGGCATTCTTGCGTTCTTGTCTAGACAAGGATCGCCTCTTTTGATCAATGTGTATCCCTATTTTGCTTATATATCTGACCCTGTCAATGTTAGATTGGATTATGCTCAATTTACTGCAACAAGTCCCAGGGCCAGAGATGGAAATTTGAACTACTTTAACTTGGCTGATGCCTTTTTCTCAGCTATGGCGAAAGTAGGCGTGCCGAATGTGAACGTTGTTGTGACTGAGAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

301

Amino Acids

32.32

Weight (kDa)

5.92

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	68 - 300	4e-57	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	4 cut(s)	25, 312, 315, 620
AclI	AACGTT	2 cut(s)	429, 879
AclWI	GGATC	2 cut(s)	296, 703
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	808
AcvI	CACGTG	1 cut(s)	653
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	6 cut(s)	31, 34, 35, 503, 504, 629
AflIII	ACRYGT	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	421, 627, 814
AjnI	CCWGG	2 cut(s)	592, 791
AluBI	AGCT	4 cut(s)	182, 326, 563, 848
AluI	AGCT	4 cut(s)	182, 326, 563, 848
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	296, 703
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	22, 169, 795
ApeKI	GCWGC	2 cut(s)	182, 389
ApoI	RAATTY	1 cut(s)	808
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspS9I	GGNCC	2 cut(s)	494, 795
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	136, 445
AsuII	TTCGAA	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	169, 376
BccI	CCATC	2 cut(s)	100, 797
BciT130I	CCWGG	2 cut(s)	594, 793
BciVI	GTATCC	1 cut(s)	729
BclI	TGATCA	2 cut(s)	94, 708
BcnI	CCSGG	1 cut(s)	492
BfaI	CTAG	4 cut(s)	15, 173, 560, 687
BfuI	GTATCC	1 cut(s)	729
BisI	GCNGC	4 cut(s)	25, 183, 315, 390
BlsI	GCNGC	4 cut(s)	26, 184, 316, 391
Bme1390I	CCNGG	3 cut(s)	492, 594, 793
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	494, 795
BmiI	GGNNCC	2 cut(s)	111, 496
BmrFI	CCNGG	3 cut(s)	492, 594, 793
BmsI	GCATC	2 cut(s)	391, 823
BpiI	GAAGAC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	498, 791, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 34, 35, 503, 504, 629
BseBI	CCWGG	2 cut(s)	594, 793
BseDI	CCNNGG	3 cut(s)	498, 791, 792
BseLI	CCNNNNNNNGG	6 cut(s)	31, 34, 35, 503, 504, 629
BseMII	CTCAG	4 cut(s)	209, 343, 858, 882
BseXI	GCAGC	2 cut(s)	169, 376
BshFI	GGCC	3 cut(s)	24, 171, 797
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	774
BslI	CCNNNNNNNGG	6 cut(s)	31, 34, 35, 503, 504, 629
BsmFI	GGGAC	1 cut(s)	774
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	24, 171, 797
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	94, 301, 695, 708
BspACI	CCGC	4 cut(s)	25, 312, 315, 620
BspANI	GGCC	3 cut(s)	24, 171, 797
BspCNI	CTCAG	4 cut(s)	208, 342, 857, 883
BspLI	GGNNCC	2 cut(s)	111, 496
BspPI	GGATC	2 cut(s)	296, 703
BspT104I	TTCGAA	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	498, 791, 792
BssMI	GATC	4 cut(s)	94, 301, 695, 708
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	594, 793
Bst4CI	ACNGT	2 cut(s)	586, 601
BstBAI	YACGTR	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	169, 866
BstDEI	CTNAG	5 cut(s)	195, 329, 552, 844, 891
BstKTI	GATC	4 cut(s)	97, 304, 698, 711
BstMBI	GATC	4 cut(s)	94, 301, 695, 708
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 323, 523, 641
BstNI	CCWGG	2 cut(s)	594, 793
BstSCI	CCNGG	3 cut(s)	490, 592, 791
BstV1I	GCAGC	2 cut(s)	169, 376
BstV2I	GAAGAC	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	3 cut(s)	24, 171, 797
Cac8I	GCNNGC	2 cut(s)	169, 866
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	494, 795
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	4 cut(s)	133, 164, 406, 414
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	5 cut(s)	195, 329, 552, 844, 891
DpnI	GATC	4 cut(s)	96, 303, 697, 710
DpnII	GATC	4 cut(s)	94, 301, 695, 708
DraIII	CACNNNGTG	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	498
Eco147I	AGGCCT	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	592, 791
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	136, 167, 409, 417
FaqI	GGGAC	1 cut(s)	774
FatI	CATG	4 cut(s)	132, 163, 405, 413
FauI	CCCGC	1 cut(s)	319
FbaI	TGATCA	2 cut(s)	94, 708
Fnu4HI	GCNGC	4 cut(s)	25, 183, 315, 390
Fsp4HI	GCNGC	4 cut(s)	25, 183, 315, 390
FspBI	CTAG	4 cut(s)	15, 173, 560, 687
GluI	GCNGC	4 cut(s)	25, 183, 315, 390
HaeIII	GGCC	3 cut(s)	24, 171, 797
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	4 cut(s)	136, 167, 409, 417
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	2 cut(s)	136, 445
Hpy166II	GTNNAC	2 cut(s)	582, 877
Hpy188I	TCNGA	1 cut(s)	742
Hpy188III	TCNNGA	3 cut(s)	197, 398, 687
Hpy8I	GTNNAC	2 cut(s)	582, 877
HpyAV	CCTTC	3 cut(s)	44, 466, 633
HpyCH4III	ACNGT	2 cut(s)	586, 601
HpyCH4IV	ACGT	4 cut(s)	429, 510, 652, 879
HpyCH4V	TGCA	6 cut(s)	167, 245, 392, 526, 635, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 323, 523, 641
HpyF3I	CTNAG	5 cut(s)	195, 329, 552, 844, 891
HpySE526I	ACGT	4 cut(s)	429, 510, 652, 879
Hsp92II	CATG	4 cut(s)	136, 167, 409, 417
Ksp22I	TGATCA	2 cut(s)	94, 708
Kzo9I	GATC	4 cut(s)	94, 301, 695, 708
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	2 cut(s)	169, 376
LweI	GCATC	2 cut(s)	391, 823
MaeI	CTAG	4 cut(s)	15, 173, 560, 687
MaeII	ACGT	4 cut(s)	429, 510, 652, 879
MaeIII	GTNAC	3 cut(s)	10, 349, 886
MalI	GATC	4 cut(s)	96, 303, 697, 710
MboI	GATC	4 cut(s)	94, 301, 695, 708
MboII	GAAGA	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	773, 808
MmeI	TCCRAC	3 cut(s)	12, 61, 405
MnlI	CCTC	9 cut(s)	28, 32, 58, 249, 285, 329, 395, 475, 711
MseI	TTAA	3 cut(s)	444, 573, 822
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	3 cut(s)	492, 594, 793
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	2 cut(s)	594, 793
MwoI	GCNNNNNNNGC	4 cut(s)	191, 323, 523, 641
NciI	CCSGG	1 cut(s)	492
NdeII	GATC	4 cut(s)	94, 301, 695, 708
NlaIII	CATG	4 cut(s)	136, 167, 409, 417
NlaIV	GGNNCC	2 cut(s)	111, 496
NmuCI	GTSAC	2 cut(s)	349, 886
NspV	TTCGAA	1 cut(s)	459
PasI	CCCWGGG	1 cut(s)	792
PceI	AGGCCT	1 cut(s)	171
PctI	GAATGC	1 cut(s)	669
PflFI	GACNNNGTC	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	26, 184, 316, 391
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
Ppu21I	YACGTR	1 cut(s)	653
Psp1406I	AACGTT	2 cut(s)	429, 879
Psp6I	CCWGG	2 cut(s)	592, 791
PspCI	CACGTG	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	592, 791
PspN4I	GGNNCC	2 cut(s)	111, 496
PspPI	GGNCC	2 cut(s)	494, 795
PstNI	CAGNNNCTG	1 cut(s)	599
PsyI	GACNNNGTC	1 cut(s)	746
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	444, 573, 822
SatI	GCNGC	4 cut(s)	25, 183, 315, 390
Sau3AI	GATC	4 cut(s)	94, 301, 695, 708
Sau96I	GGNCC	2 cut(s)	494, 795
ScrFI	CCNGG	3 cut(s)	492, 594, 793
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	2 cut(s)	391, 823
SfuI	TTCGAA	1 cut(s)	459
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	773, 808
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	4 cut(s)	25, 312, 315, 620
SspMI	CTAG	4 cut(s)	15, 173, 560, 687
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	490, 592, 791
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	586, 601
TaiI	ACGT	4 cut(s)	432, 513, 655, 882
TaqI	TCGA	2 cut(s)	300, 459
TasI	AATT	2 cut(s)	773, 808
TauI	GCSGC	2 cut(s)	27, 317
Tru1I	TTAA	3 cut(s)	444, 573, 822
Tru9I	TTAA	3 cut(s)	444, 573, 822
TseFI	GTSAC	2 cut(s)	349, 886
TseI	GCWGC	2 cut(s)	182, 389
Tsp45I	GTSAC	2 cut(s)	349, 886
TspDTI	ATGAA	5 cut(s)	63, 107, 121, 422, 603
TspGWI	ACGGA	1 cut(s)	335
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	808
XbaI	TCTAGA	1 cut(s)	686
XspI	CTAG	4 cut(s)	15, 173, 560, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.