Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

6955190 .. 6956474

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGGACTATTCTAAGAACTTGTTCCTATTACTTTTCTCATGCACAGCGTTGATTATCAGCTACTACAACGTTGATTCTTTAAGTACTGCATCAGTCGTCGGATTGAATTACGGACTCCTCGGAGACAACCTCCCATCTCCGTCCAATGTTATCAAGTTCTACAAATCTCAAAACGTTGCGAAAATCAGGATATTCGAGCCAAACAAAGACGTCCTAAACGCTTTGCGTGGAAACCGAGATATTGGAGTCACCGTAGGCATCAAGAACGAAGACTTGGAGGCACTTGCAGCCAACAAAGACGCAGTTAAATCCTGGTTCTCCACTAACATTGATCCTTACATAGCCGACGTGAACATAACATTCATTACCGTCGGAAACCAAGCCATCCCGGGCGACAAACATGGCCCTCACGTGCTTCCTGTCATTCAATCTCTCACCGACCTCGTCAAGTCAAGAAATCTCCAGATATCAATCAGCACCACGGTCACTACGACGAGCCTCGCCAGGTTGAAACCGCCTTCTGCAGGAGTTTTAACACCCCAAGCACGTCAACAGCTTGTCCCCGTGCTGAGATTGTTGTCTCAAACAAGTACACCGATCTTCGTCAATATCTATCCTTACTACTTCCATGCCTCCGACCCAAAGAACGTCCCTCTCGAGTACGCCAATTTCAATAACGACCAGATCGTGGTCAAAGACGGTGCACTAAAATATTCCAACTTGTTTGATGCAATTTTCGACGCTTTTCTGTGGGCAATGGAGAAAGAGGGAGTGAAAGGTTTACCTTTGGTGGTGTCGGAGACCGGGTGGCCCTCTGCCGGGAATGGAGGCATGACGACACCGGCTCTTCAATATACGTACATTGGTAACTTTGTGAAGCATGTTGCAAGTGGTAAAGGAACGCCTAAGAGGCCAAATAGTAGAATTGATGCGTATATATTTGAGACGTACAATGAGAACCAGAAGCCAGTTGGAATCTATCAGCATTTTGGGTTATACGATCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

337

Amino Acids

37.18

Weight (kDa)

7.73

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 336	8.4e-74	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	691
AciI	CCGC	1 cut(s)	518
AclI	AACGTT	2 cut(s)	72, 177
AclWI	GGATC	2 cut(s)	329, 998
AcvI	CACGTG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	5 cut(s)	88, 595, 665, 863, 953
AfiI	CCNNNNNNNGG	4 cut(s)	527, 691, 821, 822
AgsI	TTSAA	5 cut(s)	109, 431, 514, 676, 854
AjiI	CACGTC	2 cut(s)	352, 551
AjnI	CCWGG	2 cut(s)	314, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	2 cut(s)	63, 559
AluI	AGCT	2 cut(s)	63, 559
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	4 cut(s)	120, 588, 797, 941
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	2 cut(s)	329, 998
Ama87I	CYCGRG	2 cut(s)	391, 659
AoxI	GGCC	3 cut(s)	406, 812, 914
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	407, 813
AsuC2I	CCSGG	4 cut(s)	392, 393, 808, 823
AsuHPI	GGTGA	2 cut(s)	244, 430
AvaI	CYCGRG	2 cut(s)	391, 659
BaeGI	GKGCMC	1 cut(s)	709
BbrPI	CACGTG	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	145, 395
BciT130I	CCWGG	2 cut(s)	316, 508
BcnI	CCSGG	4 cut(s)	392, 393, 808, 823
BcoDI	GTCTC	4 cut(s)	120, 588, 797, 941
BfmI	CTRYAG	1 cut(s)	525
BglI	GCCNNNNNGGC	1 cut(s)	913
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	6 cut(s)	316, 392, 393, 508, 808, 823
BmeT110I	CYCGRG	2 cut(s)	391, 659
BmgBI	CACGTC	2 cut(s)	352, 551
BmgT120I	GGNCC	2 cut(s)	407, 813
BmrFI	CCNGG	6 cut(s)	316, 392, 393, 508, 808, 823
BmsI	GCATC	4 cut(s)	101, 270, 721, 922
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	1 cut(s)	449
BpuMI	CCSGG	4 cut(s)	392, 393, 808, 823
BsaAI	YACGTR	2 cut(s)	415, 861
BsaBI	GATNNNNATC	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	3 cut(s)	121, 391, 483
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 794, 824
Bsc4I	CCNNNNNNNGG	4 cut(s)	527, 691, 821, 822
Bse118I	RCCGGY	1 cut(s)	844
Bse1I	ACTGG	1 cut(s)	971
Bse3DI	GCAATG	1 cut(s)	765
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	316, 508
BseDI	CCNNGG	3 cut(s)	121, 391, 483
BseGI	GGATG	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	4 cut(s)	527, 691, 821, 822
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	971
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	302
BshFI	GGCC	3 cut(s)	408, 814, 916
BsiHKAI	GWGCWC	1 cut(s)	709
BsiHKCI	CYCGRG	2 cut(s)	391, 659
BsiSI	CCGG	4 cut(s)	392, 807, 822, 845
BslFI	GGGAC	2 cut(s)	548, 638
BslI	CCNNNNNNNGG	4 cut(s)	527, 691, 821, 822
BsmAI	GTCTC	4 cut(s)	120, 588, 797, 941
BsmBI	CGTCTC	1 cut(s)	941
BsmFI	GGGAC	2 cut(s)	548, 638
BsnI	GGCC	3 cut(s)	408, 814, 916
Bso31I	GGTCTC	1 cut(s)	797
BsoBI	CYCGRG	2 cut(s)	391, 659
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	4 cut(s)	334, 600, 687, 1003
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	3 cut(s)	408, 814, 916
BspCNI	CTCAG	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	2 cut(s)	329, 998
BspQI	GCTCTTC	1 cut(s)	855
BspTNI	GGTCTC	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	1 cut(s)	844
BsrI	ACTGG	1 cut(s)	971
BssAI	RCCGGY	1 cut(s)	844
BssECI	CCNNGG	3 cut(s)	121, 391, 483
BssMI	GATC	4 cut(s)	334, 600, 687, 1003
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	316, 508
Bst4CI	ACNGT	4 cut(s)	256, 373, 487, 704
Bst6I	CTCTTC	1 cut(s)	855
BstACI	GRCGYC	1 cut(s)	213
BstBAI	YACGTR	2 cut(s)	415, 861
BstDEI	CTNAG	3 cut(s)	15, 572, 909
BstDSI	CCRYGG	1 cut(s)	483
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	337, 603, 690, 1006
BstMAI	GTCTC	4 cut(s)	120, 588, 797, 941
BstMBI	GATC	4 cut(s)	334, 600, 687, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 913
BstNI	CCWGG	2 cut(s)	316, 508
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	6 cut(s)	314, 390, 391, 506, 806, 821
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	709
BstSNI	TACGTA	1 cut(s)	861
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	408, 814, 916
BtgI	CCRYGG	1 cut(s)	483
BtrI	CACGTC	2 cut(s)	352, 551
BtsCI	GGATG	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	844
Cfr13I	GGNCC	2 cut(s)	407, 813
Cfr9I	CCCGGG	1 cut(s)	391
CseI	GACGC	2 cut(s)	311, 752
Csp6I	GTAC	5 cut(s)	87, 594, 664, 862, 952
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	5 cut(s)	42, 404, 632, 835, 884
CviQI	GTAC	5 cut(s)	87, 594, 664, 862, 952
DdeI	CTNAG	3 cut(s)	15, 572, 909
DpnI	GATC	4 cut(s)	336, 602, 689, 1005
DpnII	GATC	4 cut(s)	334, 600, 687, 1003
Eam1104I	CTCTTC	1 cut(s)	855
EarI	CTCTTC	1 cut(s)	855
Eco105I	TACGTA	1 cut(s)	861
Eco31I	GGTCTC	1 cut(s)	797
Eco32I	GATATC	1 cut(s)	471
Eco72I	CACGTG	1 cut(s)	415
Eco88I	CYCGRG	2 cut(s)	391, 659
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	314, 506
EcoRV	GATATC	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	941
FaeI	CATG	5 cut(s)	45, 407, 635, 838, 887
FaqI	GGGAC	2 cut(s)	548, 638
FatI	CATG	5 cut(s)	41, 403, 631, 834, 883
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	408, 814, 916
HapII	CCGG	4 cut(s)	392, 807, 822, 845
HgaI	GACGC	2 cut(s)	311, 752
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	5 cut(s)	45, 407, 635, 838, 887
HincII	GTYRAC	1 cut(s)	554
HindII	GTYRAC	1 cut(s)	554
HinfI	GANTC	4 cut(s)	77, 117, 249, 978
HpaII	CCGG	4 cut(s)	392, 807, 822, 845
HphI	GGTGA	2 cut(s)	244, 430
Hpy166II	GTNNAC	5 cut(s)	355, 554, 596, 707, 785
Hpy188I	TCNGA	5 cut(s)	104, 125, 377, 640, 802
Hpy188III	TCNNGA	5 cut(s)	190, 265, 456, 466, 659
Hpy8I	GTNNAC	5 cut(s)	355, 554, 596, 707, 785
Hpy99I	CGWCG	5 cut(s)	104, 353, 377, 499, 746
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	4 cut(s)	256, 373, 487, 704
HpyCH4IV	ACGT	9 cut(s)	72, 177, 213, 351, 414, 550, 651, 860, 950
HpyCH4V	TGCA	7 cut(s)	45, 92, 290, 527, 707, 734, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 913
HpyF3I	CTNAG	3 cut(s)	15, 572, 909
HpySE526I	ACGT	9 cut(s)	72, 177, 213, 351, 414, 550, 651, 860, 950
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	45, 407, 635, 838, 887
Kzo9I	GATC	4 cut(s)	334, 600, 687, 1003
LguI	GCTCTTC	1 cut(s)	855
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	4 cut(s)	101, 270, 721, 922
MaeII	ACGT	9 cut(s)	72, 177, 213, 351, 414, 550, 651, 860, 950
MaeIII	GTNAC	3 cut(s)	250, 487, 869
MalI	GATC	4 cut(s)	336, 602, 689, 1005
MboI	GATC	4 cut(s)	334, 600, 687, 1003
MboII	GAAGA	3 cut(s)	284, 595, 842
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	4 cut(s)	109, 670, 735, 927
MlyI	GAGTC	2 cut(s)	111, 258
MmeI	TCCRAC	6 cut(s)	82, 355, 663, 744, 780, 955
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	3 cut(s)	83, 309, 536
MspI	CCGG	4 cut(s)	392, 807, 822, 845
MspR9I	CCNGG	6 cut(s)	316, 392, 393, 508, 808, 823
MvaI	CCWGG	2 cut(s)	316, 508
MwoI	GCNNNNNNNGC	2 cut(s)	290, 913
NciI	CCSGG	4 cut(s)	392, 393, 808, 823
NdeII	GATC	4 cut(s)	334, 600, 687, 1003
NlaIII	CATG	5 cut(s)	45, 407, 635, 838, 887
NmuCI	GTSAC	2 cut(s)	250, 487
NspI	RCATGY	1 cut(s)	887
PaeR7I	CTCGAG	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	3 cut(s)	491, 657, 687
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	77, 978
PflFI	GACNNNGTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	111, 257
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	111, 257
Ppu21I	YACGTR	2 cut(s)	415, 861
Psp1406I	AACGTT	2 cut(s)	72, 177
Psp6I	CCWGG	2 cut(s)	314, 506
PspCI	CACGTG	1 cut(s)	415
PspGI	CCWGG	2 cut(s)	314, 506
PspPI	GGNCC	2 cut(s)	407, 813
PstI	CTGCAG	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	5 cut(s)	88, 595, 665, 863, 953
RsaNI	GTAC	5 cut(s)	87, 594, 664, 862, 952
SapI	GCTCTTC	1 cut(s)	855
SaqAI	TTAA	3 cut(s)	83, 309, 536
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	334, 600, 687, 1003
Sau96I	GGNCC	2 cut(s)	407, 813
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	2 cut(s)	111, 258
ScrFI	CCNGG	6 cut(s)	316, 392, 393, 508, 808, 823
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	4 cut(s)	101, 270, 721, 922
SfcI	CTRYAG	1 cut(s)	525
Sfr274I	CTCGAG	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	659
SmaI	CCCGGG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SnaBI	TACGTA	1 cut(s)	861
Sse9I	AATT	4 cut(s)	109, 670, 735, 927
SsiI	CCGC	1 cut(s)	518
SspI	AATATT	1 cut(s)	716
StyD4I	CCNGG	6 cut(s)	314, 390, 391, 506, 806, 821
TaaI	ACNGT	4 cut(s)	256, 373, 487, 704
TaiI	ACGT	9 cut(s)	75, 180, 216, 354, 417, 553, 654, 863, 953
TaqI	TCGA	3 cut(s)	198, 660, 741
TasI	AATT	4 cut(s)	109, 670, 735, 927
TatI	WGTACW	2 cut(s)	86, 593
TfiI	GAWTC	2 cut(s)	77, 978
Tru1I	TTAA	3 cut(s)	83, 309, 536
Tru9I	TTAA	3 cut(s)	83, 309, 536
TseFI	GTSAC	2 cut(s)	250, 487
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	250, 487
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	2 cut(s)	129, 132
TspMI	CCCGGG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	446
Van91I	CCANNNNNTGG	1 cut(s)	691
VneI	GTGCAC	1 cut(s)	705
XagI	CCTNNNNNAGG	1 cut(s)	525
XceI	RCATGY	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	971
XhoI	CTCGAG	1 cut(s)	659
XmaI	CCCGGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.