Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

83569 .. 86527

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggcagtactcgattggattgcactcattctgtgtgttttagcaggctttgacaaccatgtagaccgtgtgggagctttagacataggtgtttgctatgggacgcagggaaatgaccttcctgcagcaacagatgttatcaatctctacaaaaaacacggcattgcaaaaattaggctcttcgaacctaaccatgcagcgctcgatgccctgaaagggagtggaatcggtgtcacgatagtcattccaaacgatgagttggcgcatttggcaacagggcaagctgctgtggacatatggttcaacgacaatgtagctccttatataaatgacggtaacatcaattacatcgccgtcggtaacgagcccgaccttcccgggtcagttggcatcaataatatcttgcaggtaatgaagttgtttcacaacatagttagtgacaaagggattaaggtgaccacagttgtgtcaacatttatcctaggatcttcatacccaccttcgagtggtgcattcacatcagaggctagtagtgtaacgtccggcattcttgagtttttagcatcaaccgattctccccttatgatcaatgtgtatccttactttgcctacaagtcaaaccctggcagtgttcgcttagactatgctcaattcactgcaacagacacggtggtgcaagacggagcatacagctaccacaatctgtttgacgccatggtcgattctttcgtggcagcgatggagaaagcaggcagcggaaatgtgccgccggagggcctggcggcggcagagacaacccagcatcaaagagttaggctgccttctattcaggtgtgggcttgggtcgttgggcctgggctcaactttggaatggggggtgcttgggccagtaggcctagatttgagctcaatcttgggctggttgagtctgctgcagtggacaagaagagcaagaccaacctgttgccgaggttgttggctcctgaagagactgaggacggtgctagctctaaccctaagaggaatgagctagcattttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

347

Amino Acids

37.01

Weight (kDa)

4.88

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	4 cut(s)	756, 767, 782, 785
AclWI	GGATC	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	1005
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	1 cut(s)	9
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	216, 506, 773, 784
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	622, 777, 853
AleI	CACNNNNGTG	2 cut(s)	464, 671
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	7 cut(s)	77, 284, 317, 693, 907, 1008, 1030
AluI	AGCT	7 cut(s)	77, 284, 317, 693, 907, 1008, 1030
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	2 cut(s)	785, 983
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	377
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	4 cut(s)	775, 851, 885, 893
ApeKI	GCWGC	7 cut(s)	125, 197, 284, 734, 753, 817, 932
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	202, 265
AspS9I	GGNCC	3 cut(s)	775, 851, 885
AsuC2I	CCSGG	2 cut(s)	378, 379
AsuHPI	GGTGA	1 cut(s)	466
AsuII	TTCGAA	1 cut(s)	183
AsuNHI	GCTAGC	2 cut(s)	1004, 1030
AvaI	CYCGRG	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	481
BanII	GRGCYC	3 cut(s)	369, 861, 909
Bbv12I	GWGCWC	1 cut(s)	909
BbvI	GCAGC	7 cut(s)	137, 209, 271, 746, 765, 804, 919
BccI	CCATC	1 cut(s)	733
BceAI	ACGGC	2 cut(s)	175, 338
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	3 cut(s)	624, 779, 855
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	378, 379
BcoDI	GTCTC	2 cut(s)	785, 983
BfaI	CTAG	5 cut(s)	482, 528, 897, 1005, 1031
BfmI	CTRYAG	2 cut(s)	123, 933
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	606
BlnI	CCTAGG	1 cut(s)	481
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	5 cut(s)	378, 379, 624, 779, 855
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	3 cut(s)	775, 851, 885
BmiI	GGNNCC	1 cut(s)	981
BmrFI	CCNGG	5 cut(s)	378, 379, 624, 779, 855
BmsI	GCATC	4 cut(s)	196, 399, 572, 811
BmtI	GCTAGC	2 cut(s)	1008, 1034
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	378, 379
BsaHI	GRCGYC	1 cut(s)	711
BsaJI	CCNNGG	6 cut(s)	377, 481, 622, 714, 854, 968
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 506, 773, 784
Bse1I	ACTGG	1 cut(s)	888
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	624, 779, 855
BseDI	CCNNGG	6 cut(s)	377, 481, 622, 714, 854, 968
BseLI	CCNNNNNNNGG	4 cut(s)	216, 506, 773, 784
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	984
BseNI	ACTGG	1 cut(s)	888
BseXI	GCAGC	7 cut(s)	137, 209, 271, 746, 765, 804, 919
BseYI	CCCAGC	1 cut(s)	798
BshFI	GGCC	4 cut(s)	777, 853, 887, 895
BsiHKAI	GWGCWC	1 cut(s)	909
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	378, 543, 770
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	4 cut(s)	216, 506, 773, 784
BsmAI	GTCTC	2 cut(s)	785, 983
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	2 cut(s)	512, 546
BsnI	GGCC	4 cut(s)	777, 853, 887, 895
BsoBI	CYCGRG	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	369, 861, 909
Bsp143I	GATC	2 cut(s)	485, 585
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	4 cut(s)	756, 767, 782, 785
BspANI	GGCC	4 cut(s)	777, 853, 887, 895
BspCNI	CTCAG	1 cut(s)	985
BspLI	GGNNCC	1 cut(s)	981
BspMAI	CTGCAG	2 cut(s)	127, 937
BspMI	ACCTGC	1 cut(s)	397
BspOI	GCTAGC	2 cut(s)	1008, 1034
BspPI	GGATC	1 cut(s)	493
BspQI	GCTCTTC	2 cut(s)	185, 941
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	888
BssECI	CCNNGG	6 cut(s)	377, 481, 622, 714, 854, 968
BssMI	GATC	2 cut(s)	485, 585
BssNI	GRCGYC	1 cut(s)	711
BssT1I	CCWWGG	2 cut(s)	481, 714
Bst2UI	CCWGG	3 cut(s)	624, 779, 855
Bst4CI	ACNGT	5 cut(s)	68, 335, 463, 670, 1001
Bst6I	CTCTTC	3 cut(s)	185, 941, 981
BstACI	GRCGYC	1 cut(s)	711
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	5 cut(s)	46, 282, 751, 1006, 1032
BstDEI	CTNAG	3 cut(s)	637, 993, 1017
BstDSI	CCRYGG	1 cut(s)	714
BstEII	GGTNACC	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 265
BstKTI	GATC	2 cut(s)	488, 588
BstMAI	GTCTC	2 cut(s)	785, 983
BstMBI	GATC	2 cut(s)	485, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 269, 633
BstNI	CCWGG	3 cut(s)	624, 779, 855
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	5 cut(s)	376, 377, 622, 777, 853
BstSFI	CTRYAG	2 cut(s)	123, 933
BstV1I	GCAGC	7 cut(s)	137, 209, 271, 746, 765, 804, 919
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	4 cut(s)	777, 853, 887, 895
BtgI	CCRYGG	1 cut(s)	714
BtgZI	GCGATG	2 cut(s)	334, 752
BtsI	GCAGTG	3 cut(s)	634, 654, 942
BtsIMutI	CAGTG	3 cut(s)	634, 654, 942
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	5 cut(s)	46, 282, 751, 1006, 1032
CfoI	GCGC	2 cut(s)	202, 265
Cfr13I	GGNCC	3 cut(s)	775, 851, 885
Cfr9I	CCCGGG	1 cut(s)	377
CseI	GACGC	2 cut(s)	112, 719
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	3 cut(s)	59, 194, 715
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	637, 993, 1017
DpnI	GATC	2 cut(s)	487, 587
DpnII	GATC	2 cut(s)	485, 585
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
Eam1104I	CTCTTC	3 cut(s)	185, 941, 981
EarI	CTCTTC	3 cut(s)	185, 941, 981
Ecl136II	GAGCTC	1 cut(s)	907
Eco130I	CCWWGG	2 cut(s)	481, 714
Eco147I	AGGCCT	1 cut(s)	895
Eco24I	GRGCYC	3 cut(s)	369, 861, 909
Eco47III	AGCGCT	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	907
Eco57I	CTGAAG	1 cut(s)	1005
Eco88I	CYCGRG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	907
EcoO109I	RGGNCCY	1 cut(s)	775
EcoO65I	GGTNACC	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	622, 777, 853
EcoT14I	CCWWGG	2 cut(s)	481, 714
EcoT38I	GRGCYC	3 cut(s)	369, 861, 909
ErhI	CCWWGG	2 cut(s)	481, 714
FaeI	CATG	3 cut(s)	62, 197, 718
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	58, 193, 714
FauNDI	CATATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	63
FriOI	GRGCYC	3 cut(s)	369, 861, 909
FspBI	CTAG	5 cut(s)	482, 528, 897, 1005, 1031
GlaI	GCGC	2 cut(s)	201, 264
GsaI	CCCAGC	1 cut(s)	802
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	777, 853, 887, 895
HapII	CCGG	3 cut(s)	378, 543, 770
HgaI	GACGC	2 cut(s)	112, 719
HhaI	GCGC	2 cut(s)	202, 265
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	3 cut(s)	62, 197, 718
Hin6I	GCGC	2 cut(s)	200, 263
HinP1I	GCGC	2 cut(s)	200, 263
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	4 cut(s)	225, 572, 722, 926
HpaII	CCGG	3 cut(s)	378, 543, 770
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	4 cut(s)	64, 292, 471, 940
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	3 cut(s)	235, 551, 983
Hpy8I	GTNNAC	4 cut(s)	64, 292, 471, 940
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	4 cut(s)	128, 383, 510, 831
HpyCH4III	ACNGT	5 cut(s)	68, 335, 463, 670, 1001
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	9 cut(s)	23, 125, 167, 197, 406, 512, 659, 676, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 269, 633
HpyF3I	CTNAG	3 cut(s)	637, 993, 1017
HpySE526I	ACGT	1 cut(s)	539
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	3 cut(s)	62, 197, 718
HspAI	GCGC	2 cut(s)	200, 263
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	485, 585
LguI	GCTCTTC	2 cut(s)	185, 941
LmnI	GCTCC	4 cut(s)	74, 322, 683, 985
Lsp1109I	GCAGC	7 cut(s)	137, 209, 271, 746, 765, 804, 919
LweI	GCATC	4 cut(s)	196, 399, 572, 811
MaeI	CTAG	5 cut(s)	482, 528, 897, 1005, 1031
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	6 cut(s)	232, 335, 359, 437, 454, 535
MalI	GATC	2 cut(s)	487, 587
MboI	GATC	2 cut(s)	485, 585
MboII	GAAGA	4 cut(s)	172, 480, 958, 998
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	3 cut(s)	369, 861, 909
MluCI	AATT	3 cut(s)	171, 343, 650
MlyI	GAGTC	1 cut(s)	935
MnlI	CCTC	5 cut(s)	517, 766, 963, 988, 1014
MseI	TTAA	2 cut(s)	450, 1042
MslI	CAYNNNNRTG	2 cut(s)	464, 671
MspA1I	CMGCKG	1 cut(s)	756
MspI	CCGG	3 cut(s)	378, 543, 770
MspR9I	CCNGG	5 cut(s)	378, 379, 624, 779, 855
Mva1269I	GAATGC	2 cut(s)	512, 546
MvaI	CCWGG	3 cut(s)	624, 779, 855
MwoI	GCNNNNNNNGC	3 cut(s)	206, 269, 633
NciI	CCSGG	2 cut(s)	378, 379
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	2 cut(s)	485, 585
NheI	GCTAGC	2 cut(s)	1004, 1030
NlaIII	CATG	3 cut(s)	62, 197, 718
NlaIV	GGNNCC	1 cut(s)	981
NmeAIII	GCCGAG	1 cut(s)	993
NmuCI	GTSAC	3 cut(s)	232, 437, 454
NspV	TTCGAA	1 cut(s)	183
OliI	CACNNNNGTG	2 cut(s)	464, 671
PceI	AGGCCT	1 cut(s)	895
PciSI	GCTCTTC	2 cut(s)	185, 941
PcsI	WCGNNNNNNNCGW	2 cut(s)	717, 726
PctI	GAATGC	2 cut(s)	512, 546
PfeI	GAWTC	3 cut(s)	225, 572, 722
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
Psp124BI	GAGCTC	1 cut(s)	909
Psp6I	CCWGG	3 cut(s)	622, 777, 853
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	798
PspGI	CCWGG	3 cut(s)	622, 777, 853
PspN4I	GGNNCC	1 cut(s)	981
PspPI	GGNCC	3 cut(s)	775, 851, 885
PstI	CTGCAG	2 cut(s)	127, 937
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	2 cut(s)	464, 671
SacI	GAGCTC	1 cut(s)	909
SapI	GCTCTTC	2 cut(s)	185, 941
SaqAI	TTAA	2 cut(s)	450, 1042
Sau3AI	GATC	2 cut(s)	485, 585
Sau96I	GGNCC	3 cut(s)	775, 851, 885
ScaI	AGTACT	1 cut(s)	9
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	5 cut(s)	378, 379, 624, 779, 855
SduI	GDGCHC	3 cut(s)	369, 861, 909
SfaNI	GCATC	4 cut(s)	196, 399, 572, 811
SfcI	CTRYAG	2 cut(s)	123, 933
SfuI	TTCGAA	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	464, 671
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	3 cut(s)	171, 343, 650
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	4 cut(s)	756, 767, 782, 785
SspMI	CTAG	5 cut(s)	482, 528, 897, 1005, 1031
SstI	GAGCTC	1 cut(s)	909
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	5 cut(s)	376, 377, 622, 777, 853
StyI	CCWWGG	2 cut(s)	481, 714
TaaI	ACNGT	5 cut(s)	68, 335, 463, 670, 1001
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	5 cut(s)	12, 183, 204, 503, 720
TasI	AATT	3 cut(s)	171, 343, 650
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	3 cut(s)	769, 785, 788
TfiI	GAWTC	3 cut(s)	225, 572, 722
Tru1I	TTAA	2 cut(s)	450, 1042
Tru9I	TTAA	2 cut(s)	450, 1042
TscAI	CASTG	3 cut(s)	634, 661, 942
TseFI	GTSAC	3 cut(s)	232, 437, 454
TseI	GCWGC	7 cut(s)	125, 197, 284, 734, 753, 817, 932
Tsp45I	GTSAC	3 cut(s)	232, 437, 454
TspDTI	ATGAA	2 cut(s)	428, 480
TspGWI	ACGGA	1 cut(s)	696
TspMI	CCCGGG	1 cut(s)	377
TspRI	CASTG	3 cut(s)	634, 661, 942
XmaI	CCCGGG	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	5 cut(s)	482, 528, 897, 1005, 1031
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.