Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

18728227 .. 18729246

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAGTACTGCATTGGATTGCATTCATTCTGTCCATTTTAGCAACCATTCACAACCATATAGGCCTTGTGGAAGCTTCTACTGACATAGGTGTTTGCTATGGAATGTTAGGAGATGAGCTCCCTGCTGCTACAGAAGTGGCATCCCGAATGAAGAAAGCCAATTTGGCAGGAAGTCAAGGTGCTGTGAACACATGGTTTGCAGCCAATGTAGAGCCCTATGTAAATGACATTGTCTTCAATCACATTGCTGTTGGCAATGAGGTCATTCCTGGTTCCTTGGCCGAGCACATTTTGCCTGTCATGAAGTATCTACAGAACGTCATAAATGACAAAAACTTAGATGGTATTAAGGTGACCACTGTTTTGTCAGGGACTGCATTAGCATCGTCATATCCGCCTTCAAATGGCGCATTCAAACCAGGGGCAAGCAATGTTATGAGTGCCATTCTTGCATTTTTATCGGCACGAGGATCACCCCTTATGATCAATGTGTATCCTTACTTTGCCTACTCATCTGACCCTGCCAATATACACTTGAACTACGCTCAATTCACTGCAACTACAATGGAGAAAGCAGGAGGGGGCGGTGTTGGTGTTGTGGTGTCTGAGAGTGGTTGGCCTTCTGATGGTAATGGAGATTTCACCACTCCAGAACTTGCAAGGACATATAACAGGAATTTCTTGAAGCACATAACCTCAAAGGCAGGGACACCAAAAAGACCTGGTGCTTACATTGAGGGGTACATTTTTGCCATGTTCAATGAGAATCAGAAACCTGAAGGTGTGGAGCAGCATTTCGGACTTTTTCATCCTAACATGCAACCTGTTTATCCTGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

282

Amino Acids

30.24

Weight (kDa)

5.82

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	398, 588
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	2 cut(s)	9, 746
AfiI	CCNNNNNNNGG	2 cut(s)	407, 629
AgsI	TTSAA	6 cut(s)	241, 405, 418, 541, 688, 763
AjnI	CCWGG	3 cut(s)	271, 421, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	2 cut(s)	77, 121
AluI	AGCT	2 cut(s)	77, 121
Alw21I	GWGCWC	2 cut(s)	123, 291
AlwI	GGATC	1 cut(s)	481
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	64, 282, 620
ApeKI	GCWGC	3 cut(s)	128, 203, 793
ApoI	RAATTY	1 cut(s)	679
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspLEI	GCGC	1 cut(s)	413
AsuHPI	GGTGA	3 cut(s)	367, 468, 637
BanII	GRGCYC	2 cut(s)	123, 219
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	123, 291
BbvI	GCAGC	3 cut(s)	115, 215, 805
BccI	CCATC	2 cut(s)	338, 623
BcgI	CGANNNNNNTGC	4 cut(s)	369, 403, 444, 478
BciT130I	CCWGG	3 cut(s)	273, 423, 726
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	486
BfmI	CTRYAG	2 cut(s)	132, 314
BfuI	GTATCC	1 cut(s)	507
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	129, 204, 794
BlsI	GCNGC	3 cut(s)	130, 205, 795
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	3 cut(s)	273, 423, 726
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	3 cut(s)	273, 423, 726
BmsI	GCATC	2 cut(s)	152, 395
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	279, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 629
Bse3DI	GCAATG	3 cut(s)	246, 265, 439
BseBI	CCWGG	3 cut(s)	273, 423, 726
BseDI	CCNNGG	2 cut(s)	279, 422
BseGI	GGATG	2 cut(s)	143, 811
BseLI	CCNNNNNNNGG	2 cut(s)	407, 629
BseMI	GCAATG	3 cut(s)	246, 265, 439
BseMII	CTCAG	1 cut(s)	600
BseXI	GCAGC	3 cut(s)	115, 215, 805
BshFI	GGCC	3 cut(s)	66, 284, 622
BsiHKAI	GWGCWC	2 cut(s)	123, 291
BslFI	GGGAC	2 cut(s)	388, 724
BslI	CCNNNNNNNGG	2 cut(s)	407, 629
BsmFI	GGGAC	2 cut(s)	388, 724
BsmI	GAATGC	2 cut(s)	23, 413
BsnI	GGCC	3 cut(s)	66, 284, 622
Bsp1286I	GDGCHC	3 cut(s)	123, 219, 291
Bsp143I	GATC	2 cut(s)	473, 486
BspACI	CCGC	2 cut(s)	398, 588
BspANI	GGCC	3 cut(s)	66, 284, 622
BspCNI	CTCAG	1 cut(s)	601
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	481
BsrDI	GCAATG	3 cut(s)	246, 265, 439
BssECI	CCNNGG	2 cut(s)	279, 422
BssMI	GATC	2 cut(s)	473, 486
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	273, 423, 726
Bst4CI	ACNGT	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	340, 609
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	143, 811
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	2 cut(s)	476, 489
BstMBI	GATC	2 cut(s)	473, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 295, 452
BstNI	CCWGG	3 cut(s)	273, 423, 726
BstNSI	RCATGY	1 cut(s)	823
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	271, 421, 724
BstSFI	CTRYAG	2 cut(s)	132, 314
BstV1I	GCAGC	3 cut(s)	115, 215, 805
BstV2I	GAAGAC	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	3 cut(s)	66, 284, 622
BtsCI	GGATG	2 cut(s)	143, 811
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	360, 555
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	413
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	8, 745
CviAII	CATG	4 cut(s)	195, 304, 757, 820
CviJI	RGCY	8 cut(s)	66, 77, 121, 161, 206, 217, 284, 622
CviKI_1	RGCY	8 cut(s)	66, 77, 121, 161, 206, 217, 284, 622
CviQI	GTAC	2 cut(s)	8, 745
DdeI	CTNAG	2 cut(s)	340, 609
DpnI	GATC	2 cut(s)	475, 488
DpnII	GATC	2 cut(s)	473, 486
EaeI	YGGCCR	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	123, 219
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	801
Eco91I	GGTNACC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	3 cut(s)	271, 421, 724
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	123, 219
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	4 cut(s)	198, 307, 760, 823
FaqI	GGGAC	2 cut(s)	388, 724
FatI	CATG	4 cut(s)	194, 303, 756, 819
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	129, 204, 794
FokI	GGATG	2 cut(s)	130, 798
FriOI	GRGCYC	2 cut(s)	123, 219
Fsp4HI	GCNGC	3 cut(s)	129, 204, 794
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	3 cut(s)	129, 204, 794
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	66, 284, 622
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	4 cut(s)	198, 307, 760, 823
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	1 cut(s)	769
HphI	GGTGA	3 cut(s)	367, 468, 637
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	5 cut(s)	520, 610, 628, 774, 803
Hpy188III	TCNNGA	4 cut(s)	147, 304, 653, 685
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	411, 633, 776
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	8 cut(s)	13, 23, 203, 380, 455, 560, 662, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 295, 452
HpyF3I	CTNAG	2 cut(s)	340, 609
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	198, 307, 760, 823
HspAI	GCGC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	473, 486
LmnI	GCTCC	2 cut(s)	126, 790
Lsp1109I	GCAGC	3 cut(s)	115, 215, 805
LweI	GCATC	2 cut(s)	152, 395
MabI	ACCWGGT	1 cut(s)	724
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	2 cut(s)	475, 488
MboI	GATC	2 cut(s)	473, 486
MboII	GAAGA	2 cut(s)	166, 229
MhlI	GDGCHC	3 cut(s)	123, 219, 291
MluCI	AATT	3 cut(s)	163, 551, 679
MnlI	CCTC	5 cut(s)	256, 464, 575, 709, 733
MseI	TTAA	2 cut(s)	351, 844
MspR9I	CCNGG	3 cut(s)	273, 423, 726
Mva1269I	GAATGC	2 cut(s)	23, 413
MvaI	CCWGG	3 cut(s)	273, 423, 726
MwoI	GCNNNNNNNGC	3 cut(s)	167, 295, 452
NdeII	GATC	2 cut(s)	473, 486
NlaIII	CATG	4 cut(s)	198, 307, 760, 823
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	823
PagI	TCATGA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	66
PctI	GAATGC	2 cut(s)	23, 413
PfeI	GAWTC	1 cut(s)	769
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	130, 205, 795
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	271, 421, 724
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	3 cut(s)	271, 421, 724
PspN4I	GGNNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	9, 746
RsaNI	GTAC	2 cut(s)	8, 745
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	351, 844
SatI	GCNGC	3 cut(s)	129, 204, 794
Sau3AI	GATC	2 cut(s)	473, 486
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	3 cut(s)	273, 423, 726
SduI	GDGCHC	3 cut(s)	123, 219, 291
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	2 cut(s)	152, 395
SfcI	CTRYAG	2 cut(s)	132, 314
Sse9I	AATT	3 cut(s)	163, 551, 679
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	398, 588
SstI	GAGCTC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	271, 421, 724
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	324
TasI	AATT	3 cut(s)	163, 551, 679
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	2 cut(s)	351, 844
Tru9I	TTAA	2 cut(s)	351, 844
TscAI	CASTG	2 cut(s)	367, 562
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	3 cut(s)	128, 203, 793
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	4 cut(s)	16, 167, 320, 800
TspRI	CASTG	2 cut(s)	367, 562
Tth111I	GACNNNGTC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	823
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.