Rmu_sc0004359.1_g000028

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004359.1
Physical Location & Seq
Forward (+)
102395 .. 102805
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004359.1_g000028.1.cds

Sequence Viewer

Length: 411 bp
atggcgaaagcagctggaaacgggcatgtcagagttgtggtgtcggagagtggttggccttcggacgggaacggaaatttcaccactccagagcttgcaatgacatataaccagaacttcatgtaccattgcctttccatggaaaggacaccaaaaagacccggtgaacctattgaagcgtttatttttgccatgttcaatgagaaccagaaacctaagggcgaggagcaacattttggtctcttctatcccaacatggaacctgttaggacaccaaaaagacccgatgaacctattgaagcgtttatttttgccatgttcaatgagaaccagaaacctaagggcgaggagcaacattttggtctcttctatcccaacatggaacctgtttattatatgccttttacttga

Protein Analysis

136

Amino Acids

15.72

Weight (kDa)

5.35

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 65, 139, 144
AgsI TTSAA 4 cut(s) 176, 199, 299, 322
AluBI AGCT 2 cut(s) 14, 94
AluI AGCT 2 cut(s) 14, 94
Alw26I GTCTC 2 cut(s) 245, 368
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 73, 176
AxyI CCTNAGG 2 cut(s) 216, 339
BbvI GCAGC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 245, 368
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 261, 384
BmrFI CCNGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 162
BsaI GGTCTC 2 cut(s) 245, 368
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 139, 144
Bse21I CCTNAGG 2 cut(s) 216, 339
Bse3DI GCAATG 2 cut(s) 105, 127
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 65, 139, 144
BseMI GCAATG 2 cut(s) 105, 127
BseRI GAGGAG 2 cut(s) 239, 362
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 3 cut(s) 65, 139, 144
BsmAI GTCTC 2 cut(s) 245, 368
BsnI GGCC 1 cut(s) 58
Bso31I GGTCTC 2 cut(s) 245, 368
Bsp19I CCATGG 1 cut(s) 138
BspANI GGCC 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 261, 384
BspTNI GGTCTC 2 cut(s) 245, 368
BsrDI GCAATG 2 cut(s) 105, 127
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 248, 371
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 216, 339
BstDSI CCRYGG 1 cut(s) 138
BstMAI GTCTC 2 cut(s) 245, 368
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 23
Bsu36I CCTNAGG 2 cut(s) 216, 339
BsuRI GGCC 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 124
CviAII CATG 7 cut(s) 26, 121, 139, 193, 256, 316, 379
CviJI RGCY 3 cut(s) 14, 58, 94
CviKI_1 RGCY 3 cut(s) 14, 58, 94
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 216, 339
Eam1104I CTCTTC 2 cut(s) 248, 371
EarI CTCTTC 2 cut(s) 248, 371
Eco130I CCWWGG 1 cut(s) 138
Eco31I GGTCTC 2 cut(s) 245, 368
Eco81I CCTNAGG 2 cut(s) 216, 339
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 7 cut(s) 29, 124, 142, 196, 259, 319, 382
FatI CATG 7 cut(s) 25, 120, 138, 192, 255, 315, 378
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 58
HapII CCGG 1 cut(s) 162
Hin1II CATG 7 cut(s) 29, 124, 142, 196, 259, 319, 382
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 73, 176
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 32, 46, 64
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 216, 339
Hsp92II CATG 7 cut(s) 29, 124, 142, 196, 259, 319, 382
LmnI GCTCC 2 cut(s) 226, 349
LpnPI CCDG 7 cut(s) 102, 125, 175, 221, 276, 344, 399
Lsp1109I GCAGC 1 cut(s) 23
MboII GAAGA 2 cut(s) 235, 358
MluCI AATT 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 2 cut(s) 217, 340
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 138
NlaIII CATG 7 cut(s) 29, 124, 142, 196, 259, 319, 382
NlaIV GGNNCC 2 cut(s) 261, 384
NspI RCATGY 1 cut(s) 29
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 261, 384
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 162
SetI ASST 8 cut(s) 16, 96, 172, 217, 265, 295, 340, 388
Sse9I AATT 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 138
TasI AATT 1 cut(s) 76
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 109, 303
TspGWI ACGGA 1 cut(s) 87
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.