Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7255507 .. 7255779

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCAGTGCTACAGTGGATTTTGGGTGTTGTAGCAACCCTTAACAACCATATAGGCCTTGTGGGAGCTTCAAAAATAGGCGTTTGCTATGGAATGCTGGGAAGTGACCTCCCTGCAGCAACAGAAGTTGTCAATCTCTACAAACAATACCACATTGGAAAAATGAGGCTCTTCGATCCTAAACAAGCAGCGCTTGAAGCTCTAAGAGGGAGCGGAATTCGTATCACAGTTGGCATTCCAAATGAAGACTTGGCAGATTTAGCAAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

90

Amino Acids

9.61

Weight (kDa)

7.91

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	26 - 88	3.9e-16	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	213
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	216
AfeI	AGCGCT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	72, 197
AluBI	AGCT	3 cut(s)	68, 200, 270
AluI	AGCT	3 cut(s)	68, 200, 270
AlwI	GGATC	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	192
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	116, 188
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	128, 200
BfaI	CTAG	1 cut(s)	271
BfmI	CTRYAG	2 cut(s)	11, 114
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	2 cut(s)	117, 189
BlsI	GCNGC	2 cut(s)	118, 190
BpiI	GAAGAC	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	128, 200
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	57
BsmI	GAATGC	2 cut(s)	99, 234
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	213
BssMI	GATC	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	15, 229
Bst6I	CTCTTC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 260
BstSFI	CTRYAG	2 cut(s)	11, 114
BstV1I	GCAGC	2 cut(s)	128, 200
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 20
CfoI	GCGC	1 cut(s)	193
CviJI	RGCY	5 cut(s)	57, 68, 169, 200, 270
CviKI_1	RGCY	5 cut(s)	57, 68, 169, 200, 270
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	57
Eco47III	AGCGCT	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	216
FaiI	YATR	3 cut(s)	51, 53, 90
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
Fnu4HI	GCNGC	2 cut(s)	117, 189
Fsp4HI	GCNGC	2 cut(s)	117, 189
FspBI	CTAG	1 cut(s)	271
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	2 cut(s)	117, 189
GsaI	CCCAGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	15, 229
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 260
HpyF3I	CTNAG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	65, 210
LpnPI	CCDG	2 cut(s)	83, 126
Lsp1109I	GCAGC	2 cut(s)	128, 200
MaeI	CTAG	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	177
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	163, 257
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	3 cut(s)	119, 159, 200
MseI	TTAA	1 cut(s)	42
Mva1269I	GAATGC	2 cut(s)	99, 234
MwoI	GCNNNNNNNGC	2 cut(s)	197, 260
NdeII	GATC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	176
PctI	GAATGC	2 cut(s)	99, 234
PkrI	GCNGC	2 cut(s)	118, 190
PspFI	CCCAGC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	117, 189
Sau3AI	GATC	1 cut(s)	175
SetI	ASST	4 cut(s)	70, 111, 202, 272
SfcI	CTRYAG	2 cut(s)	11, 114
SgeI	CNNG	6 cut(s)	71, 110, 125, 197, 206, 262
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	271
StuI	AGGCCT	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	15, 229
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	12, 20
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	116, 188
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	12, 20
XapI	RAATTY	1 cut(s)	216
XspI	CTAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.