Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00182

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

4009 .. 5085

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCAGTACTCGATTGGATTGCACTCATTCTGTGTGTTTTAGCAGGATTTGACAACCATGTAGGCCGTGTGGGAGCTTTAGACATAGGTGTTTGCTATGGGACGCAGGGAAATGACCTTCCTGCAGCAACAGATGTTATCAATCTCTACAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACTTAACCATGCAGCGCTCGATGCCCTGAAAGGGAGTGGAATCGGTGTCACGATAGGCATTCCAAACGATGAGTTGGCGCATTTGGCAGCAGGCCAAGCCGCTGTGTACATATGGTTCAACGACAATGTAGCTCCTTATATAAATGACGGTAACATCAATTACATCGCCGTCGGTAACGAGCCCGACCTTCCCGGGTCAGTAGGCATCAATAATATCTTGCCGGTAATGAAGTTGTTTCACAACATAGTTAGTGACAAAGGGATTAAGGTGACCACAGTTGTGTCAACATTTATCCTAGGATCTTCATACCCACCTTCGAGTGGTGCATTCACATCAGAGGCTAGTAGTGTAACGTCCGGCATTCTTGAGTTTTTAGCATCAACCGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAAACCCTGGCAGTGTTCGCTTAGACTATGCTCAAATATTCACTGCAGCAGACACGGTGGTGCAAGACGGAGCATACAGCTACCACAATCTGTTTGATGCCATGGTCGATTCTTTCGTGGCAGCGATGGAGAAAGCAGGCGGCGGAAATGTCGGAAATATCAGCACTCCACAACTCGCAGCCACATATAACAAGAATTTCATGAATCATATCCTTAAAAAGGAAGGGACACCAAGAAGACCTGGTGAAAACATTGAAGGGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAATGGGGAGGACGAAAAACACTATGGTCTTTTTTATCCCAACATGCAACCTGTTTATGATGTATTTCCTTTGAACAAAACCTTCTATCTTGATTTCCAGTTAAGCAAAATCATGATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

344

Amino Acids

37.33

Weight (kDa)

5.09

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 325	2.1e-73	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	285, 756, 759
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	811
AfaI	GTAC	2 cut(s)	9, 293
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	3 cut(s)	216, 506, 835
AgsI	TTSAA	4 cut(s)	304, 872, 895, 985
AjnI	CCWGG	2 cut(s)	622, 856
AleI	CACNNNNGTG	2 cut(s)	464, 674
AluBI	AGCT	3 cut(s)	77, 317, 696
AluI	AGCT	3 cut(s)	77, 317, 696
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	377
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	2 cut(s)	64, 277
ApeKI	GCWGC	6 cut(s)	125, 197, 272, 662, 737, 794
ApoI	RAATTY	1 cut(s)	811
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	202, 265
AsuC2I	CCSGG	2 cut(s)	378, 379
AsuHPI	GGTGA	2 cut(s)	466, 872
AsuII	TTCGAA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	859
BbvI	GCAGC	6 cut(s)	137, 209, 284, 674, 749, 806
BccI	CCATC	1 cut(s)	736
BceAI	ACGGC	3 cut(s)	51, 175, 338
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	624, 858
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	378, 379
BfaI	CTAG	2 cut(s)	482, 528
BfmI	CTRYAG	2 cut(s)	123, 660
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	8 cut(s)	126, 198, 273, 285, 663, 738, 757, 795
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	8 cut(s)	127, 199, 274, 286, 664, 739, 758, 796
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	4 cut(s)	378, 379, 624, 858
BmeT110I	CYCGRG	1 cut(s)	377
BmrFI	CCNGG	4 cut(s)	378, 379, 624, 858
BmsI	GCATC	4 cut(s)	196, 399, 572, 703
BpiI	GAAGAC	1 cut(s)	859
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	378, 379
BsaJI	CCNNGG	4 cut(s)	377, 481, 622, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 506, 835
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	1009
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	624, 858
BseDI	CCNNGG	4 cut(s)	377, 481, 622, 717
BseLI	CCNNNNNNNGG	3 cut(s)	216, 506, 835
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	1009
BseXI	GCAGC	6 cut(s)	137, 209, 284, 674, 749, 806
BshFI	GGCC	2 cut(s)	66, 279
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	378, 407, 543
BslFI	GGGAC	2 cut(s)	115, 856
BslI	CCNNNNNNNGG	3 cut(s)	216, 506, 835
BsmFI	GGGAC	2 cut(s)	115, 856
BsmI	GAATGC	3 cut(s)	243, 512, 546
BsnI	GGCC	2 cut(s)	66, 279
BsoBI	CYCGRG	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	485, 585
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	3 cut(s)	285, 756, 759
BspANI	GGCC	2 cut(s)	66, 279
BspHI	TCATGA	2 cut(s)	816, 1023
BspMAI	CTGCAG	2 cut(s)	127, 664
BspPI	GGATC	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	1009
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	4 cut(s)	377, 481, 622, 717
BssMI	GATC	2 cut(s)	485, 585
BssT1I	CCWWGG	2 cut(s)	481, 717
Bst2UI	CCWGG	2 cut(s)	624, 858
Bst4CI	ACNGT	3 cut(s)	335, 463, 673
Bst6I	CTCTTC	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	277, 754
BstDEI	CTNAG	1 cut(s)	637
BstDSI	CCRYGG	1 cut(s)	717
BstEII	GGTNACC	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	833
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 265
BstKTI	GATC	2 cut(s)	488, 588
BstMBI	GATC	2 cut(s)	485, 585
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 269, 281, 633
BstNI	CCWGG	2 cut(s)	624, 858
BstNSI	RCATGY	1 cut(s)	958
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	4 cut(s)	376, 377, 622, 856
BstSFI	CTRYAG	2 cut(s)	123, 660
BstV1I	GCAGC	6 cut(s)	137, 209, 284, 674, 749, 806
BstV2I	GAAGAC	1 cut(s)	859
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	66, 279
BtgI	CCRYGG	1 cut(s)	717
BtgZI	GCGATG	2 cut(s)	334, 755
BtsI	GCAGTG	2 cut(s)	634, 657
BtsIMutI	CAGTG	2 cut(s)	634, 657
Cac8I	GCNNGC	2 cut(s)	277, 754
CciI	TCATGA	2 cut(s)	816, 1023
CfoI	GCGC	2 cut(s)	202, 265
Cfr10I	RCCGGY	1 cut(s)	406
Cfr9I	CCCGGG	1 cut(s)	377
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	856
Csp6I	GTAC	2 cut(s)	8, 292
CviAII	CATG	7 cut(s)	59, 194, 718, 817, 889, 955, 1024
CviQI	GTAC	2 cut(s)	8, 292
DdeI	CTNAG	1 cut(s)	637
DpnI	GATC	2 cut(s)	487, 587
DpnII	GATC	2 cut(s)	485, 585
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	774
Eco130I	CCWWGG	2 cut(s)	481, 717
Eco24I	GRGCYC	1 cut(s)	369
Eco47III	AGCGCT	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	833
EcoO65I	GGTNACC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	622, 856
EcoT14I	CCWWGG	2 cut(s)	481, 717
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	481, 717
FaeI	CATG	7 cut(s)	62, 197, 721, 820, 892, 958, 1027
FaqI	GGGAC	2 cut(s)	115, 856
FatI	CATG	7 cut(s)	58, 193, 717, 816, 888, 954, 1023
FauNDI	CATATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	8 cut(s)	126, 198, 273, 285, 663, 738, 757, 795
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	8 cut(s)	126, 198, 273, 285, 663, 738, 757, 795
FspBI	CTAG	2 cut(s)	482, 528
GlaI	GCGC	2 cut(s)	201, 264
GluI	GCNGC	8 cut(s)	126, 198, 273, 285, 663, 738, 757, 795
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	66, 279
HapII	CCGG	3 cut(s)	378, 407, 543
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	202, 265
Hin1II	CATG	7 cut(s)	62, 197, 721, 820, 892, 958, 1027
Hin6I	GCGC	2 cut(s)	200, 263
HinP1I	GCGC	2 cut(s)	200, 263
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	5 cut(s)	225, 572, 725, 820, 1027
HpaII	CCGG	3 cut(s)	378, 407, 543
HphI	GGTGA	2 cut(s)	466, 872
Hpy166II	GTNNAC	2 cut(s)	292, 471
Hpy188I	TCNGA	2 cut(s)	523, 770
Hpy188III	TCNNGA	5 cut(s)	235, 551, 817, 1001, 1024
Hpy8I	GTNNAC	2 cut(s)	292, 471
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	6 cut(s)	128, 383, 510, 833, 866, 1003
HpyCH4III	ACNGT	3 cut(s)	335, 463, 673
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	8 cut(s)	23, 125, 167, 197, 512, 662, 679, 958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 269, 281, 633
HpyF3I	CTNAG	1 cut(s)	637
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	7 cut(s)	62, 197, 721, 820, 892, 958, 1027
HspAI	GCGC	2 cut(s)	200, 263
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	485, 585
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	74, 322, 686
Lsp1109I	GCAGC	6 cut(s)	137, 209, 284, 674, 749, 806
LweI	GCATC	4 cut(s)	196, 399, 572, 703
MabI	ACCWGGT	1 cut(s)	856
MaeI	CTAG	2 cut(s)	482, 528
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	6 cut(s)	232, 335, 359, 437, 454, 535
MalI	GATC	2 cut(s)	487, 587
MboI	GATC	2 cut(s)	485, 585
MboII	GAAGA	3 cut(s)	172, 480, 864
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	171, 343, 811
MmeI	TCCRAC	1 cut(s)	748
MnlI	CCTC	2 cut(s)	517, 913
MseI	TTAA	4 cut(s)	189, 450, 831, 1013
MslI	CAYNNNNRTG	2 cut(s)	464, 674
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	3 cut(s)	378, 407, 543
MspR9I	CCNGG	4 cut(s)	378, 379, 624, 858
Mva1269I	GAATGC	3 cut(s)	243, 512, 546
MvaI	CCWGG	2 cut(s)	624, 858
MwoI	GCNNNNNNNGC	4 cut(s)	206, 269, 281, 633
NciI	CCSGG	2 cut(s)	378, 379
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	2 cut(s)	485, 585
NlaIII	CATG	7 cut(s)	62, 197, 721, 820, 892, 958, 1027
NmuCI	GTSAC	3 cut(s)	232, 437, 454
NspI	RCATGY	1 cut(s)	958
NspV	TTCGAA	1 cut(s)	183
OliI	CACNNNNGTG	2 cut(s)	464, 674
PagI	TCATGA	2 cut(s)	816, 1023
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PctI	GAATGC	3 cut(s)	243, 512, 546
PfeI	GAWTC	5 cut(s)	225, 572, 725, 820, 1027
PkrI	GCNGC	8 cut(s)	127, 199, 274, 286, 664, 739, 758, 796
Psp6I	CCWGG	2 cut(s)	622, 856
PspEI	GGTNACC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	622, 856
PsrI	GAACNNNNNNTAC	2 cut(s)	284, 316
PstI	CTGCAG	2 cut(s)	127, 664
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	2 cut(s)	9, 293
RsaNI	GTAC	2 cut(s)	8, 292
RseI	CAYNNNNRTG	2 cut(s)	464, 674
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	189, 450, 831, 1013
SatI	GCNGC	8 cut(s)	126, 198, 273, 285, 663, 738, 757, 795
Sau3AI	GATC	2 cut(s)	485, 585
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	4 cut(s)	378, 379, 624, 858
SduI	GDGCHC	1 cut(s)	369
SexAI	ACCWGGT	1 cut(s)	856
SfaNI	GCATC	4 cut(s)	196, 399, 572, 703
SfcI	CTRYAG	2 cut(s)	123, 660
SfuI	TTCGAA	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	464, 674
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	3 cut(s)	171, 343, 811
SsiI	CCGC	3 cut(s)	285, 756, 759
SspI	AATATT	1 cut(s)	654
SspMI	CTAG	2 cut(s)	482, 528
StyD4I	CCNGG	4 cut(s)	376, 377, 622, 856
StyI	CCWWGG	2 cut(s)	481, 717
TaaI	ACNGT	3 cut(s)	335, 463, 673
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	5 cut(s)	12, 183, 204, 503, 723
TasI	AATT	3 cut(s)	171, 343, 811
TatI	WGTACW	2 cut(s)	7, 291
TauI	GCSGC	2 cut(s)	287, 759
TfiI	GAWTC	5 cut(s)	225, 572, 725, 820, 1027
Tru1I	TTAA	4 cut(s)	189, 450, 831, 1013
Tru9I	TTAA	4 cut(s)	189, 450, 831, 1013
TscAI	CASTG	2 cut(s)	634, 664
TseFI	GTSAC	3 cut(s)	232, 437, 454
TseI	GCWGC	6 cut(s)	125, 197, 272, 662, 737, 794
Tsp45I	GTSAC	3 cut(s)	232, 437, 454
TspDTI	ATGAA	4 cut(s)	428, 480, 805, 833
TspGWI	ACGGA	1 cut(s)	699
TspMI	CCCGGG	1 cut(s)	377
TspRI	CASTG	2 cut(s)	634, 664
XagI	CCTNNNNNAGG	1 cut(s)	833
XapI	RAATTY	1 cut(s)	811
XceI	RCATGY	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XmaI	CCCGGG	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	2 cut(s)	482, 528
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.