RchiOBHm_Chr6g0274281

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
35718321 .. 35722943
4623 bp
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UTR
Exon/CDS
Intron
PRQ24604

Sequence Viewer

Length: 426 bp
ATGGAATATGTTGTCAATCTCTACAAAAAATATGGCATTGGAAAGATGAGGTTGTTCGATCCTAGCCTCGCCGCCCTCCAAGCTCTCAGGGGTAGCCAAATCCGTGTCATTCTTGGCATACAAAACGAAGACTTGTCCAACCTCGCTGAACTGTTTTGGGGGCTTCATATCCCGCCTTCAAGTGGTGCATTTATAGCAGATACACGTGATGTTATGAGTGGCATTCTTGCGTTCTTGTCTAGACAAGGATCGCCTCTTTTGATCAATGCGTATCCCTATTTTGCTTATGTATCTGACCCTGTAAATGTTAGATTGGATTATGCTCAATTTACTGCAACAAGTCCTAGGGCCGTAGATGGAAATTTGAACTTCTTTAACTTGTTGACGCCTTGGTTGATGCCTTTTTCTCAGCTATGTAGAAAGTAG

Protein Analysis

141

Amino Acids

15.82

Weight (kDa)

8.79

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 4 - 49 2.1e-06 Glycosyl hydrolases family 17
Glyco_hydro_17 PF00332 57 - 125 9.8e-12 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 173
AclWI GGATC 2 cut(s) 53, 256
AcsI RAATTY 1 cut(s) 361
AcvI CACGTG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 180, 367
AluBI AGCT 2 cut(s) 83, 412
AluI AGCT 2 cut(s) 83, 412
AlwI GGATC 2 cut(s) 53, 256
AoxI GGCC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 361
AspA2I CCTAGG 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 348
AvrII CCTAGG 1 cut(s) 344
BbrPI CACGTG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 135
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 335
BciVI GTATCC 1 cut(s) 282
BclI TGATCA 1 cut(s) 261
BfaI CTAG 3 cut(s) 63, 240, 345
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 1 cut(s) 72
BlnI CCTAGG 1 cut(s) 344
BlsI GCNGC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 348
BmsI GCATC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 344, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 344, 389
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 100, 422
BshFI GGCC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 182
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 1 cut(s) 350
Bsp143I GATC 3 cut(s) 58, 248, 261
BspACI CCGC 2 cut(s) 72, 173
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 99, 421
BspPI GGATC 2 cut(s) 53, 256
BssECI CCNNGG 2 cut(s) 344, 389
BssMI GATC 3 cut(s) 58, 248, 261
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 2 cut(s) 344, 389
Bst4CI ACNGT 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 386
BstBAI YACGTR 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 86, 408
BstKTI GATC 3 cut(s) 61, 251, 264
BstMBI GATC 3 cut(s) 58, 248, 261
BstMWI GCNNNNNNNGC 2 cut(s) 80, 194
BstV2I GAAGAC 1 cut(s) 135
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 348
CseI GACGC 1 cut(s) 394
CviJI RGCY 6 cut(s) 66, 83, 96, 163, 350, 412
CviKI_1 RGCY 6 cut(s) 66, 83, 96, 163, 350, 412
DdeI CTNAG 2 cut(s) 86, 408
DpnI GATC 3 cut(s) 60, 250, 263
DpnII GATC 3 cut(s) 58, 248, 261
Eco130I CCWWGG 2 cut(s) 344, 389
Eco72I CACGTG 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 344, 389
ErhI CCWWGG 2 cut(s) 344, 389
FaiI YATR 9 cut(s) 9, 33, 119, 168, 194, 215, 288, 321, 415
FauI CCCGC 1 cut(s) 180
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 63, 240, 345
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 350
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 188, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 194
HpyF3I CTNAG 2 cut(s) 86, 408
HpySE526I ACGT 1 cut(s) 205
Hsp92I GRCGYC 1 cut(s) 386
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 3 cut(s) 58, 248, 261
LpnPI CCDG 2 cut(s) 73, 312
LweI GCATC 1 cut(s) 387
MaeI CTAG 3 cut(s) 63, 240, 345
MaeII ACGT 1 cut(s) 205
MalI GATC 3 cut(s) 60, 250, 263
MboI GATC 3 cut(s) 58, 248, 261
MboII GAAGA 1 cut(s) 140
MluCI AATT 2 cut(s) 326, 361
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 5 cut(s) 42, 77, 86, 152, 264
MseI TTAA 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 80, 194
NdeII GATC 3 cut(s) 58, 248, 261
PctI GAATGC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 73
PmaCI CACGTG 1 cut(s) 206
PmlI CACGTG 1 cut(s) 206
Ppu21I YACGTR 1 cut(s) 206
PspCI CACGTG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 58, 248, 261
Sau96I GGNCC 1 cut(s) 348
SetI ASST 5 cut(s) 53, 85, 144, 208, 414
SfaNI GCATC 1 cut(s) 387
Sse9I AATT 2 cut(s) 326, 361
SsiI CCGC 2 cut(s) 72, 173
SspMI CTAG 3 cut(s) 63, 240, 345
StyI CCWWGG 2 cut(s) 344, 389
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 326, 361
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 92
XapI RAATTY 1 cut(s) 361
XbaI TCTAGA 1 cut(s) 239
XmaJI CCTAGG 1 cut(s) 344
XspI CTAG 3 cut(s) 63, 240, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.