Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

84968921 .. 84969945

Gene Structure 1025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCAGTATCGTACTGGATTGCAATCATTCTGTCACTTTTAGCAACAATTGACAACCATGTATTTCTACTGGAAGCTTCAGACGTAGGAGTTTGCTATGGAACGTTAGGGAATGACCTCCCAGCAGCAACAGAAGTTGTCAATCTCTACAAGAAACATAGTATCACCAAAATGAGGCTTTTTGATCCAAACACAGCAGCCCTTCAGGCACTGAAAGGGAGCGGAATCAGTGTCATACTTGGCATTCAAAACCAAGACTTACCCGCACTGGCAGCAAGTCAAGAAGCTGTGAACGCATGGTTCACCGCCAATGTTGAGCCTTACCTTGATGGTATTGAACTCAGTTATATTGCTGTTGGCAATGAGGTTATTCCCGGCCCAGAGCTGAGTGGGATTAAGGTGACCACAGTTGTTCCAGGAACTGCCTTAGGATCTTCATACCCGCCTTCAAGTGGTGTATTCGCAGCGGAGGCTGTTGAAGTCATGACCAGCATTGTTCAATTTTTAGCGTCAACCAATTCATCTCTTATGATCAATGCGTACCCTTACTTTGCCTACAAGTCAGACCCCGCCAATGTTCACTTGGACTATGCTCTATTCACTACTAAAACCTCGGTGATTCAAGATGGACCACTCGGCTACTACAACCTGTTGGATGCCATAGTGGATTCGTTTTACACTGCAATGGAGAAAGTAGGCAGCCCTAATGTCACGGTTGTGGTGTCTGAAAGTGGTTGGCCTTCTGCTGGGAGCGGACAGTTCACCACCCCAGAACTTGCAGGGACATATAACCGGAATTTCATCAAACACATCAGTTCAAGGGTAGGAACACCAAAAAGACCTGATCAATTCATTGAAGGATACATCTTTGCCATGTTCAATGAGAATCAGAAACCTGAGGGCGAGGAGCAGCATTTTGGTCTTTTTTATCCTAACATGGAACCTGTTTATCCTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

320

Amino Acids

34.59

Weight (kDa)

4.6

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 126	6.7e-25	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	129 - 319	1.6e-59	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	222, 753
AciI	CCGC	7 cut(s)	222, 264, 306, 443, 467, 570, 753
AclI	AACGTT	1 cut(s)	104
AclWI	GGATC	2 cut(s)	179, 439
AcsI	RAATTY	1 cut(s)	796
AcuI	CTGAAG	2 cut(s)	63, 188
AfaI	GTAC	2 cut(s)	14, 542
AfiI	CCNNNNNNNGG	3 cut(s)	174, 452, 746
AgsI	TTSAA	9 cut(s)	248, 338, 450, 479, 500, 623, 819, 857, 880
AjnI	CCWGG	1 cut(s)	415
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	3 cut(s)	77, 287, 385
AluI	AGCT	3 cut(s)	77, 287, 385
AlwI	GGATC	2 cut(s)	179, 439
AlwNI	CAGNNNCTG	2 cut(s)	211, 422
AoxI	GGCC	2 cut(s)	376, 737
ApeKI	GCWGC	6 cut(s)	125, 197, 272, 464, 699, 910
ApoI	RAATTY	1 cut(s)	796
AspS9I	GGNCC	2 cut(s)	377, 629
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	5 cut(s)	157, 295, 412, 628, 754
AvaII	GGWCC	1 cut(s)	629
AxyI	CCTNAGG	2 cut(s)	427, 897
BbvI	GCAGC	6 cut(s)	137, 209, 284, 476, 711, 922
BccI	CCATC	2 cut(s)	323, 620
BciT130I	CCWGG	1 cut(s)	417
BciVI	GTATCC	1 cut(s)	854
BclI	TGATCA	2 cut(s)	531, 844
BcnI	CCSGG	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	854
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	6 cut(s)	126, 198, 273, 465, 700, 911
BlsI	GCNGC	6 cut(s)	127, 199, 274, 466, 701, 912
Bme1390I	CCNGG	2 cut(s)	375, 417
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	377, 629
BmiI	GGNNCC	1 cut(s)	942
BmrFI	CCNGG	2 cut(s)	375, 417
BmsI	GCATC	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	612
BsaWI	WCCGGW	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 452, 746
Bse1I	ACTGG	3 cut(s)	20, 75, 273
Bse21I	CCTNAGG	2 cut(s)	427, 897
Bse3DI	GCAATG	2 cut(s)	367, 690
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	3 cut(s)	174, 452, 746
BseMI	GCAATG	2 cut(s)	367, 690
BseMII	CTCAG	3 cut(s)	355, 377, 888
BseNI	ACTGG	3 cut(s)	20, 75, 273
BseRI	GAGGAG	1 cut(s)	920
BseXI	GCAGC	6 cut(s)	137, 209, 284, 476, 711, 922
BseYI	CCCAGC	2 cut(s)	121, 746
BshFI	GGCC	2 cut(s)	378, 739
BsiSI	CCGG	2 cut(s)	375, 793
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	3 cut(s)	174, 452, 746
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	378, 739
Bsp143I	GATC	4 cut(s)	184, 431, 531, 844
BspACI	CCGC	7 cut(s)	222, 264, 306, 443, 467, 570, 753
BspANI	GGCC	2 cut(s)	378, 739
BspCNI	CTCAG	3 cut(s)	354, 378, 889
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	942
BspPI	GGATC	2 cut(s)	179, 439
BsrBI	CCGCTC	2 cut(s)	222, 753
BsrDI	GCAATG	2 cut(s)	367, 690
BsrI	ACTGG	3 cut(s)	20, 75, 273
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	4 cut(s)	184, 431, 531, 844
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	409, 715, 759
BstDEI	CTNAG	4 cut(s)	341, 386, 427, 897
BstEII	GGTNACC	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	4 cut(s)	187, 434, 534, 847
BstMBI	GATC	4 cut(s)	184, 431, 531, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 470
BstNI	CCWGG	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	373, 415
BstV1I	GCAGC	6 cut(s)	137, 209, 284, 476, 711, 922
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
Bsu36I	CCTNAGG	2 cut(s)	427, 897
BsuI	GTATCC	1 cut(s)	854
BsuRI	GGCC	2 cut(s)	378, 739
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	4 cut(s)	209, 235, 266, 678
CaiI	CAGNNNCTG	2 cut(s)	211, 422
CciI	TCATGA	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	377, 629
CseI	GACGC	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	13, 541
CviAII	CATG	5 cut(s)	59, 297, 484, 874, 937
CviQI	GTAC	2 cut(s)	13, 541
DdeI	CTNAG	4 cut(s)	341, 386, 427, 897
DpnI	GATC	4 cut(s)	186, 433, 533, 846
DpnII	GATC	4 cut(s)	184, 431, 531, 844
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	63, 188
Eco81I	CCTNAGG	2 cut(s)	427, 897
Eco91I	GGTNACC	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	415
FaeI	CATG	5 cut(s)	62, 300, 487, 877, 940
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	5 cut(s)	58, 296, 483, 873, 936
FauI	CCCGC	3 cut(s)	271, 450, 577
FbaI	TGATCA	2 cut(s)	531, 844
Fnu4HI	GCNGC	6 cut(s)	126, 198, 273, 465, 700, 911
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	6 cut(s)	126, 198, 273, 465, 700, 911
GluI	GCNGC	6 cut(s)	126, 198, 273, 465, 700, 911
GsaI	CCCAGC	2 cut(s)	125, 750
HaeIII	GGCC	2 cut(s)	378, 739
HapII	CCGG	2 cut(s)	375, 793
HgaI	GACGC	1 cut(s)	498
Hin1II	CATG	5 cut(s)	62, 300, 487, 877, 940
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	4 cut(s)	225, 619, 668, 886
HpaII	CCGG	2 cut(s)	375, 793
HphI	GGTGA	5 cut(s)	157, 295, 412, 628, 754
Hpy166II	GTNNAC	5 cut(s)	292, 303, 513, 580, 762
Hpy188I	TCNGA	4 cut(s)	82, 565, 727, 891
Hpy188III	TCNNGA	3 cut(s)	281, 484, 623
Hpy8I	GTNNAC	5 cut(s)	292, 303, 513, 580, 762
HpyAV	CCTTC	4 cut(s)	212, 456, 750, 851
HpyCH4III	ACNGT	3 cut(s)	409, 715, 759
HpyCH4IV	ACGT	2 cut(s)	84, 104
HpyCH4V	TGCA	3 cut(s)	23, 683, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 470
HpyF3I	CTNAG	4 cut(s)	341, 386, 427, 897
HpySE526I	ACGT	2 cut(s)	84, 104
Hsp92II	CATG	5 cut(s)	62, 300, 487, 877, 940
Ksp22I	TGATCA	2 cut(s)	531, 844
Kzo9I	GATC	4 cut(s)	184, 431, 531, 844
LmnI	GCTCC	3 cut(s)	219, 750, 907
Lsp1109I	GCAGC	6 cut(s)	137, 209, 284, 476, 711, 922
LweI	GCATC	1 cut(s)	646
MaeII	ACGT	2 cut(s)	84, 104
MaeIII	GTNAC	3 cut(s)	33, 400, 709
MalI	GATC	4 cut(s)	186, 433, 533, 846
MbiI	CCGCTC	2 cut(s)	222, 753
MboI	GATC	4 cut(s)	184, 431, 531, 844
MboII	GAAGA	1 cut(s)	426
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	5 cut(s)	48, 500, 517, 796, 848
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	7 cut(s)	128, 168, 358, 463, 622, 892, 898
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	3 cut(s)	170, 683, 716
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	2 cut(s)	375, 793
MspR9I	CCNGG	2 cut(s)	375, 417
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	206, 272, 293, 470
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	4 cut(s)	184, 431, 531, 844
NlaIII	CATG	5 cut(s)	62, 300, 487, 877, 940
NlaIV	GGNNCC	1 cut(s)	942
NmeAIII	GCCGAG	1 cut(s)	615
NmuCI	GTSAC	3 cut(s)	33, 400, 709
OliI	CACNNNNGTG	1 cut(s)	716
PagI	TCATGA	1 cut(s)	483
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	4 cut(s)	225, 619, 668, 886
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	6 cut(s)	127, 199, 274, 466, 701, 912
Psp1406I	AACGTT	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	415
PspEI	GGTNACC	1 cut(s)	400
PspFI	CCCAGC	2 cut(s)	121, 746
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	942
PspPI	GGNCC	2 cut(s)	377, 629
PstNI	CAGNNNCTG	2 cut(s)	211, 422
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	2 cut(s)	14, 542
RsaNI	GTAC	2 cut(s)	13, 541
RseI	CAYNNNNRTG	3 cut(s)	170, 683, 716
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	6 cut(s)	126, 198, 273, 465, 700, 911
Sau3AI	GATC	4 cut(s)	184, 431, 531, 844
Sau96I	GGNCC	2 cut(s)	377, 629
ScrFI	CCNGG	2 cut(s)	375, 417
SfaNI	GCATC	1 cut(s)	646
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	3 cut(s)	170, 683, 716
Sse9I	AATT	5 cut(s)	48, 500, 517, 796, 848
SsiI	CCGC	7 cut(s)	222, 264, 306, 443, 467, 570, 753
StyD4I	CCNGG	2 cut(s)	373, 415
TaaI	ACNGT	3 cut(s)	409, 715, 759
TaiI	ACGT	2 cut(s)	87, 107
TasI	AATT	5 cut(s)	48, 500, 517, 796, 848
TfiI	GAWTC	4 cut(s)	225, 619, 668, 886
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	4 cut(s)	216, 235, 273, 685
TseFI	GTSAC	3 cut(s)	33, 400, 709
TseI	GCWGC	6 cut(s)	125, 197, 272, 464, 699, 910
Tsp45I	GTSAC	3 cut(s)	33, 400, 709
TspDTI	ATGAA	4 cut(s)	426, 510, 790, 841
TspRI	CASTG	4 cut(s)	216, 235, 273, 685
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.