Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

33910213 .. 33913153

Gene Structure 2941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCACCATTTCTTTGGGTGATATTCATCCTTTCAATTGTATCAATTCAACTATTCAAAACCATACAGGCCTGGTGGAAGCTGCTACTTCTGCTCAGGACAGGTGTTTGCTATGGAATGTTGGAGAACAACCTACCTCCTGCAACCACTACTAGAAAAACTAGCCATTGCACACAGATGAGATTCACACATATAAGATTCTGTGTGAGAAACACTGCGATACATACAGATGTTTGTGTGAAAATTATATTCACACAGATATCTGTGCAATGTCCCATTTTTCTCATGTGGGATATATATATTCTCAACACTTACCTTAATGACATCACCTTCGAATACATCTCTGCTGGTAATGAGGTTATTCCCGGACCCTTCGGTGGGTACGTTTTACCTGTAATGCAGTCTCTACAAAACATTAATCTTAATGCTAAGAACCTAGCTACTCGTATTAAGGTGTCAACAGTTGTGCCAGGAACTGTTTTGGGGGCTTCATATCCGCCTTCAAGTGGTGCATTTACAGCAGATACACGTGATGTTATGAGTGGCATTCTTGCGTTCTTGTCTAGACAAGGATCGCCTCTTTTGATCAATGCGTATCCCTATTTTGCTTATGTATCTGACCCTGTAAATGTTAGATTGGATTATGCTCAATTTACTGCAACAAGTCTTGGGGCCATAGATGGAAATTTGAACCACTTTAACTTGTTTGACGCCTTGGTTGATCCCTTTTTCTCAGCCATTGGATGGCCATCCGACGGGCATGGAGATTTCACCACCCCACAATTCGCAGCGACGTACAACAAAAATTTCGCGACATATCTTAAGGGGACACCGAAAAGACCAAATGCTTCCATTCAAGGGTATATATTTGCTATGTTCAATAATCAGAAACCTAATGGTGAAGATCAGCAGTATTTTGGACTTTTTTATCCTAACATGCAACCTGTTAATCCTATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

320

Amino Acids

35.83

Weight (kDa)

8.52

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	35 - 316	1.1e-45	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccII	CGCG	1 cut(s)	812
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	2 cut(s)	580, 716
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	2 cut(s)	685, 805
AcvI	CACGTG	1 cut(s)	530
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	2 cut(s)	383, 797
AfiI	CCNNNNNNNGG	6 cut(s)	377, 378, 506, 744, 755, 858
AflII	CTTAAG	1 cut(s)	821
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	7 cut(s)	36, 50, 58, 504, 691, 857, 880
AjnI	CCWGG	2 cut(s)	71, 469
AluBI	AGCT	2 cut(s)	82, 440
AluI	AGCT	2 cut(s)	82, 440
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	580, 716
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	3 cut(s)	69, 672, 746
ApeKI	GCWGC	2 cut(s)	82, 788
ApoI	RAATTY	2 cut(s)	685, 805
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AseI	ATTAAT	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	368, 672
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	4 cut(s)	31, 319, 763, 911
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	530
BbvI	GCAGC	2 cut(s)	69, 800
BccI	CCATC	3 cut(s)	674, 738, 757
BciT130I	CCWGG	2 cut(s)	73, 471
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	4 cut(s)	153, 162, 437, 564
BfrI	CTTAAG	1 cut(s)	821
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	2 cut(s)	83, 789
BlsI	GCNGC	2 cut(s)	84, 790
Bme1390I	CCNGG	3 cut(s)	73, 366, 471
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	368, 672
BmiI	GGNNCC	3 cut(s)	6, 370, 673
BmrFI	CCNGG	3 cut(s)	73, 366, 471
Bpu10I	CCTNAGC	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	530
BsaBI	GATNNNNATC	2 cut(s)	26, 748
BsaHI	GRCGYC	1 cut(s)	711
BsaJI	CCNNGG	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	6 cut(s)	377, 378, 506, 744, 755, 858
Bse3DI	GCAATG	2 cut(s)	166, 275
Bse8I	GATNNNNATC	2 cut(s)	26, 748
BseBI	CCWGG	2 cut(s)	73, 471
BseDI	CCNNGG	1 cut(s)	714
BseGI	GGATG	3 cut(s)	27, 749, 749
BseJI	GATNNNNATC	2 cut(s)	26, 748
BseLI	CCNNNNNNNGG	6 cut(s)	377, 378, 506, 744, 755, 858
BseMI	GCAATG	2 cut(s)	166, 275
BseMII	CTCAG	2 cut(s)	109, 747
BseXI	GCAGC	2 cut(s)	69, 800
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	3 cut(s)	71, 674, 748
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	258, 841
BslI	CCNNNNNNNGG	6 cut(s)	377, 378, 506, 744, 755, 858
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	258, 841
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	3 cut(s)	71, 674, 748
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	572, 585, 721, 904
Bsp68I	TCGCGA	1 cut(s)	812
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	3 cut(s)	71, 674, 748
BspCNI	CTCAG	2 cut(s)	108, 746
BspFNI	CGCG	1 cut(s)	812
BspLI	GGNNCC	3 cut(s)	6, 370, 673
BspPI	GGATC	2 cut(s)	580, 716
BspT104I	TTCGAA	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	821
BsrDI	GCAATG	2 cut(s)	166, 275
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	4 cut(s)	572, 585, 721, 904
BssNI	GRCGYC	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	73, 471
Bst4CI	ACNGT	2 cut(s)	463, 478
BstACI	GRCGYC	1 cut(s)	711
BstAFI	CTTAAG	1 cut(s)	821
BstBAI	YACGTR	1 cut(s)	530
BstBI	TTCGAA	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	95, 429, 733
BstF5I	GGATG	3 cut(s)	27, 749, 749
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	4 cut(s)	575, 588, 724, 907
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	572, 585, 721, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 518
BstNI	CCWGG	2 cut(s)	73, 471
BstNSI	RCATGY	1 cut(s)	940
BstSCI	CCNGG	3 cut(s)	71, 364, 469
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	2 cut(s)	69, 800
BstXI	CCANNNNNNTGG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	71, 674, 748
BtsCI	GGATG	3 cut(s)	27, 749, 749
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
BtuMI	TCGCGA	1 cut(s)	812
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	368, 672
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	2 cut(s)	382, 796
CviAII	CATG	3 cut(s)	286, 761, 937
CviJI	RGCY	8 cut(s)	71, 82, 165, 440, 488, 674, 737, 748
CviKI_1	RGCY	8 cut(s)	71, 82, 165, 440, 488, 674, 737, 748
CviQI	GTAC	2 cut(s)	382, 796
DdeI	CTNAG	3 cut(s)	95, 429, 733
DpnI	GATC	4 cut(s)	574, 587, 723, 906
DpnII	GATC	4 cut(s)	572, 585, 721, 904
EaeI	YGGCCR	1 cut(s)	746
EciI	GGCGGA	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	368
Eco72I	CACGTG	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	71, 469
EcoRV	GATATC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	3 cut(s)	289, 764, 940
FaqI	GGGAC	2 cut(s)	258, 841
FatI	CATG	3 cut(s)	285, 760, 936
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	83, 789
FokI	GGATG	3 cut(s)	14, 736, 756
Fsp4HI	GCNGC	2 cut(s)	83, 789
FspBI	CTAG	4 cut(s)	153, 162, 437, 564
GluI	GCNGC	2 cut(s)	83, 789
HaeIII	GGCC	3 cut(s)	71, 674, 748
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	719
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	3 cut(s)	289, 764, 940
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	2 cut(s)	183, 198
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	4 cut(s)	31, 319, 763, 911
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	3 cut(s)	619, 754, 888
Hpy188III	TCNNGA	3 cut(s)	97, 564, 811
Hpy8I	GTNNAC	1 cut(s)	459
Hpy99I	CGWCG	2 cut(s)	758, 796
HpyAV	CCTTC	3 cut(s)	340, 382, 510
HpyCH4III	ACNGT	2 cut(s)	463, 478
HpyCH4IV	ACGT	3 cut(s)	384, 529, 794
HpyCH4V	TGCA	7 cut(s)	143, 171, 268, 400, 512, 659, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 518
HpyF3I	CTNAG	3 cut(s)	95, 429, 733
HpySE526I	ACGT	3 cut(s)	384, 529, 794
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	3 cut(s)	289, 764, 940
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	572, 585, 721, 904
Lsp1109I	GCAGC	2 cut(s)	69, 800
MaeI	CTAG	4 cut(s)	153, 162, 437, 564
MaeII	ACGT	3 cut(s)	384, 529, 794
MalI	GATC	4 cut(s)	574, 587, 723, 906
MboI	GATC	4 cut(s)	572, 585, 721, 904
MboII	GAAGA	1 cut(s)	914
MfeI	CAATTG	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	748
MluCI	AATT	7 cut(s)	36, 45, 243, 650, 685, 782, 805
MluNI	TGGCCA	1 cut(s)	748
MmeI	TCCRAC	2 cut(s)	102, 777
MnlI	CCTC	3 cut(s)	147, 349, 588
Mox20I	TGGCCA	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	748
MseI	TTAA	7 cut(s)	318, 417, 423, 450, 699, 822, 948
MslI	CAYNNNNRTG	2 cut(s)	176, 228
Msp20I	TGGCCA	1 cut(s)	748
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	3 cut(s)	73, 366, 471
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	73, 471
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	2 cut(s)	91, 518
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	572, 585, 721, 904
NlaIII	CATG	3 cut(s)	289, 764, 940
NlaIV	GGNNCC	3 cut(s)	6, 370, 673
NruI	TCGCGA	1 cut(s)	812
NspI	RCATGY	1 cut(s)	940
NspV	TTCGAA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	183, 198
PflMI	CCANNNNNTGG	1 cut(s)	744
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	84, 790
PmaCI	CACGTG	1 cut(s)	530
PmlI	CACGTG	1 cut(s)	530
Ppu21I	YACGTR	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	71, 469
PspCI	CACGTG	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	71, 469
PspN4I	GGNNCC	3 cut(s)	6, 370, 673
PspPI	GGNCC	2 cut(s)	368, 672
PstNI	CAGNNNCTG	1 cut(s)	476
RruI	TCGCGA	1 cut(s)	812
RsaI	GTAC	2 cut(s)	383, 797
RsaNI	GTAC	2 cut(s)	382, 796
RseI	CAYNNNNRTG	2 cut(s)	176, 228
SaqAI	TTAA	7 cut(s)	318, 417, 423, 450, 699, 822, 948
SatI	GCNGC	2 cut(s)	83, 789
Sau3AI	GATC	4 cut(s)	572, 585, 721, 904
Sau96I	GGNCC	2 cut(s)	368, 672
ScrFI	CCNGG	3 cut(s)	73, 366, 471
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	176, 228
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	7 cut(s)	36, 45, 243, 650, 685, 782, 805
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	4 cut(s)	153, 162, 437, 564
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	71, 364, 469
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	463, 478
TaiI	ACGT	3 cut(s)	387, 532, 797
TaqI	TCGA	1 cut(s)	333
TasI	AATT	7 cut(s)	36, 45, 243, 650, 685, 782, 805
TfiI	GAWTC	2 cut(s)	183, 198
Tru1I	TTAA	7 cut(s)	318, 417, 423, 450, 699, 822, 948
Tru9I	TTAA	7 cut(s)	318, 417, 423, 450, 699, 822, 948
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	2 cut(s)	82, 788
TspDTI	ATGAA	2 cut(s)	16, 480
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	744
Vha464I	CTTAAG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	2 cut(s)	685, 805
XbaI	TCTAGA	1 cut(s)	563
XceI	RCATGY	1 cut(s)	940
XspI	CTAG	4 cut(s)	153, 162, 437, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.