Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006422.1

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

4964 .. 5989

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006422.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggctgtgctacagtggattgcattcattctgggtgttgtagcaacccttaacaaccatataggccttgtgggagcatcaaaaataggcgtttgctatggaatgctgggaagtgacctccctgcagcaacagaagttgtcaatctctacaaacaataccacattggcaaaatgaggctcttcgatcctaaccaagcagcgcttgaagctctaagagggagcggaattcgtgtcacagttggcattccgaacgaagacttggcagatttagcaagaagccaggatgctgtgaacacatggttcaacaacaatatagctccttatctacatgacattatcttcgactacatagccgttggtaacgaggtcattctcggttcattaggcaactatgtcttgcctgtaatggagtcgttacaaaacatccttaaagataaagggtatgtgacaaaggtgaccacagttgtgccatcaactgccctaggatcttcatacccgccttctagtggggaattcacacaagaggctagcagtgtcatgcccgacattctcaagtttttagcatcaaccctttcaccccttatgatcaatgtgtatccttactttgcccacaagtcagaccctgcccatgttcccttagactacgctcagttcacttcggataaaccagtggttcgagacggaaacttaatgtacttctgcctgtttgatgccattgtggatgcctttttggcagcaatggcgaaagcagctggaaacgggcatgtcagagttgtggtgtcggagagtggttggccttcggacgggaacggaaatttcaccactccagagcttgcaatgacatataaccagaacttcatgtaccattgcctttccatggaagggacaccaaaaagacccggtgaacctattgaagcgtttatttttgccatgttcaatgagaaccagaaacctaagggcgaggagcaacattttggtctcttctatcccaacatggaacctgtttattatatgccttttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

341

Amino Acids

37.45

Weight (kDa)

5.04

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AciI	CCGC	2 cut(s)	222, 497
AclWI	GGATC	2 cut(s)	179, 493
AcsI	RAATTY	3 cut(s)	225, 512, 814
AfaI	GTAC	2 cut(s)	695, 863
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	506, 803, 877, 882
AgsI	TTSAA	4 cut(s)	206, 304, 914, 937
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	4 cut(s)	209, 317, 752, 832
AluI	AGCT	4 cut(s)	209, 317, 752, 832
Alw26I	GTCTC	2 cut(s)	672, 983
AlwI	GGATC	2 cut(s)	179, 493
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	2 cut(s)	64, 794
ApeKI	GCWGC	4 cut(s)	125, 197, 734, 749
ApoI	RAATTY	3 cut(s)	225, 512, 814
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	900
AsuHPI	GGTGA	4 cut(s)	466, 567, 811, 914
AsuNHI	GCTAGC	1 cut(s)	527
AvrII	CCTAGG	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	954
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	137, 209, 746, 761
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	900
BcoDI	GTCTC	2 cut(s)	672, 983
BfaI	CTAG	3 cut(s)	482, 504, 528
BfmI	CTRYAG	2 cut(s)	11, 123
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	606
BglI	GCCNNNNNGGC	1 cut(s)	731
BisI	GCNGC	4 cut(s)	126, 198, 735, 750
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	4 cut(s)	127, 199, 736, 751
Bme1390I	CCNGG	2 cut(s)	281, 900
BmiI	GGNNCC	1 cut(s)	999
BmrFI	CCNGG	2 cut(s)	281, 900
BmsI	GCATC	5 cut(s)	86, 274, 572, 700, 712
BmtI	GCTAGC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	481, 876
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 803, 877, 882
Bse1I	ACTGG	1 cut(s)	668
Bse21I	CCTNAGG	1 cut(s)	954
Bse3DI	GCAATG	3 cut(s)	744, 843, 865
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	481, 876
BseGI	GGATG	3 cut(s)	289, 423, 727
BseLI	CCNNNNNNNGG	4 cut(s)	506, 803, 877, 882
BseMI	GCAATG	3 cut(s)	744, 843, 865
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	668
BseRI	GAGGAG	1 cut(s)	977
BseXI	GCAGC	4 cut(s)	137, 209, 746, 761
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	66, 796
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	4 cut(s)	506, 803, 877, 882
BsmAI	GTCTC	2 cut(s)	672, 983
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	898
BsmI	GAATGC	3 cut(s)	23, 108, 243
BsnI	GGCC	2 cut(s)	66, 796
Bso31I	GGTCTC	1 cut(s)	983
Bsp143I	GATC	3 cut(s)	184, 485, 585
Bsp19I	CCATGG	1 cut(s)	876
BspACI	CCGC	2 cut(s)	222, 497
BspANI	GGCC	2 cut(s)	66, 796
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	999
BspMAI	CTGCAG	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	179, 493
BspQI	GCTCTTC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	983
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	3 cut(s)	744, 843, 865
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	481, 876
BssMI	GATC	3 cut(s)	184, 485, 585
BssT1I	CCWWGG	2 cut(s)	481, 876
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	15, 238, 463
Bst6I	CTCTTC	2 cut(s)	185, 986
BstC8I	GCNNGC	2 cut(s)	529, 834
BstDEI	CTNAG	4 cut(s)	212, 637, 648, 954
BstDSI	CCRYGG	1 cut(s)	876
BstEII	GGTNACC	1 cut(s)	454
BstF5I	GGATG	3 cut(s)	289, 423, 727
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	187, 488, 588
BstMAI	GTCTC	2 cut(s)	672, 983
BstMBI	GATC	3 cut(s)	184, 485, 585
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 269, 731, 740, 749
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	767
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	279, 898
BstSFI	CTRYAG	2 cut(s)	11, 123
BstV1I	GCAGC	4 cut(s)	137, 209, 746, 761
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu36I	CCTNAGG	1 cut(s)	954
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	66, 796
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	3 cut(s)	289, 423, 727
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	20, 538, 675
Cac8I	GCNNGC	2 cut(s)	529, 834
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	694, 862
CviAII	CATG	9 cut(s)	297, 329, 538, 629, 764, 859, 877, 931, 994
CviQI	GTAC	2 cut(s)	694, 862
DdeI	CTNAG	4 cut(s)	212, 637, 648, 954
DpnI	GATC	3 cut(s)	186, 487, 587
DpnII	GATC	3 cut(s)	184, 485, 585
Eam1104I	CTCTTC	2 cut(s)	185, 986
EarI	CTCTTC	2 cut(s)	185, 986
Eco130I	CCWWGG	2 cut(s)	481, 876
Eco147I	AGGCCT	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	983
Eco47III	AGCGCT	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	954
Eco91I	GGTNACC	1 cut(s)	454
EcoO65I	GGTNACC	1 cut(s)	454
EcoRI	GAATTC	2 cut(s)	225, 512
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	481, 876
ErhI	CCWWGG	2 cut(s)	481, 876
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	9 cut(s)	300, 332, 541, 632, 767, 862, 880, 934, 997
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	9 cut(s)	296, 328, 537, 628, 763, 858, 876, 930, 993
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	4 cut(s)	126, 198, 735, 750
FokI	GGATG	3 cut(s)	296, 410, 734
Fsp4HI	GCNGC	4 cut(s)	126, 198, 735, 750
FspBI	CTAG	3 cut(s)	482, 504, 528
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	4 cut(s)	126, 198, 735, 750
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	66, 796
HapII	CCGG	1 cut(s)	900
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	9 cut(s)	300, 332, 541, 632, 767, 862, 880, 934, 997
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	4 cut(s)	466, 567, 811, 914
Hpy166II	GTNNAC	3 cut(s)	292, 654, 905
Hpy188I	TCNGA	6 cut(s)	249, 619, 661, 770, 784, 802
Hpy188III	TCNNGA	2 cut(s)	677, 827
Hpy8I	GTNNAC	3 cut(s)	292, 654, 905
HpyAV	CCTTC	3 cut(s)	510, 807, 875
HpyCH4III	ACNGT	3 cut(s)	15, 238, 463
HpyCH4V	TGCA	3 cut(s)	23, 125, 836
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 269, 731, 740, 749
HpyF3I	CTNAG	4 cut(s)	212, 637, 648, 954
Hsp92II	CATG	9 cut(s)	300, 332, 541, 632, 767, 862, 880, 934, 997
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	184, 485, 585
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	4 cut(s)	74, 219, 322, 964
Lsp1109I	GCAGC	4 cut(s)	137, 209, 746, 761
LweI	GCATC	5 cut(s)	86, 274, 572, 700, 712
MaeI	CTAG	3 cut(s)	482, 504, 528
MaeIII	GTNAC	6 cut(s)	113, 232, 359, 414, 445, 454
MalI	GATC	3 cut(s)	186, 487, 587
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	3 cut(s)	184, 485, 585
MboII	GAAGA	5 cut(s)	172, 266, 331, 480, 973
MflI	RGATCY	1 cut(s)	485
MluCI	AATT	3 cut(s)	225, 512, 814
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	6 cut(s)	128, 168, 209, 358, 517, 955
MseI	TTAA	3 cut(s)	51, 429, 689
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	1 cut(s)	900
MspR9I	CCNGG	2 cut(s)	281, 900
Mva1269I	GAATGC	3 cut(s)	23, 108, 243
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	5 cut(s)	206, 269, 731, 740, 749
NciI	CCSGG	1 cut(s)	900
NcoI	CCATGG	1 cut(s)	876
NdeII	GATC	3 cut(s)	184, 485, 585
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	9 cut(s)	300, 332, 541, 632, 767, 862, 880, 934, 997
NlaIV	GGNNCC	1 cut(s)	999
NmuCI	GTSAC	4 cut(s)	113, 232, 445, 454
NspI	RCATGY	1 cut(s)	767
OliI	CACNNNNGTG	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	185
PctI	GAATGC	3 cut(s)	23, 108, 243
PkrI	GCNGC	4 cut(s)	127, 199, 736, 751
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	999
PsrI	GAACNNNNNNTAC	2 cut(s)	845, 877
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	695, 863
RsaNI	GTAC	2 cut(s)	694, 862
RseI	CAYNNNNRTG	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	51, 429, 689
SatI	GCNGC	4 cut(s)	126, 198, 735, 750
Sau3AI	GATC	3 cut(s)	184, 485, 585
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	281, 900
SfaNI	GCATC	5 cut(s)	86, 274, 572, 700, 712
SfcI	CTRYAG	2 cut(s)	11, 123
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	3 cut(s)	225, 512, 814
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	222, 497
SspMI	CTAG	3 cut(s)	482, 504, 528
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	279, 898
StyI	CCWWGG	2 cut(s)	481, 876
TaaI	ACNGT	3 cut(s)	15, 238, 463
TaqI	TCGA	3 cut(s)	183, 342, 676
TasI	AATT	3 cut(s)	225, 512, 814
TatI	WGTACW	1 cut(s)	693
Tru1I	TTAA	3 cut(s)	51, 429, 689
Tru9I	TTAA	3 cut(s)	51, 429, 689
TscAI	CASTG	3 cut(s)	20, 538, 675
TseFI	GTSAC	4 cut(s)	113, 232, 445, 454
TseI	GCWGC	4 cut(s)	125, 197, 734, 749
Tsp45I	GTSAC	4 cut(s)	113, 232, 445, 454
TspDTI	ATGAA	4 cut(s)	16, 369, 480, 847
TspGWI	ACGGA	2 cut(s)	696, 825
TspRI	CASTG	3 cut(s)	20, 538, 675
XapI	RAATTY	3 cut(s)	225, 512, 814
XceI	RCATGY	1 cut(s)	767
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	3 cut(s)	482, 504, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.