AT1G45190

Contains the following InterPro domains Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000474
Physical Location & Seq
Forward (+)
17104351 .. 17105004
654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G45190.1

Sequence Viewer

Length: 519 bp
ATGGCAAAATCTCTTCTCATGGTAATGCTCGTGTCTATAGTAATGTTTTACATGGCTCGTCCAATTTGCTCCCAAAAAATTAATCCACATTCACAGGAGATGCCAGAAGATGTGGCCATATCTCCATCTTCAGATTTTGATTACGTCGAAGCTCCCGATGAAGCTCCATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTCGGACAAACAGCTCAAGTTTCTTGAGGCTTGCTCTGAAAAGCCGAGTTCAAAATGCGGAAATGAGGTTTTCAAGAACATGTTAAATGAGACAATGCCAATTACGGAGGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGCCATCTAGGATTGGTTAAACTCATATTTGCCACATATGAGTATAAAAATATTGCATCTAAGGGCATTCCAAAGAGCAAACAAGCATGGAATGAATGTATTCGTAGAGTAGGTAGCAAGATTGGTGCTCCAGTCTCTTTTGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

172

Amino Acids

19.47

Weight (kDa)

5.28

Isoelectric Point (pI)

67.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 86 - 156 1.1e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 189, 282
AcoI YGGCCR 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 4 cut(s) 276, 298, 355, 512
AluBI AGCT 5 cut(s) 152, 164, 179, 211, 238
AluI AGCT 5 cut(s) 152, 164, 179, 211, 238
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 308, 508
AoxI GGCC 1 cut(s) 114
AseI ATTAAT 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 177, 209
AsuII TTCGAA 1 cut(s) 171
BalI TGGCCA 1 cut(s) 116
BauI CACGAG 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 499
BccI CCATC 3 cut(s) 133, 352, 381
BcoDI GTCTC 2 cut(s) 308, 508
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 36
BmsI GCATC 2 cut(s) 90, 434
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 224, 269
BsaBI GATNNNNATC 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 500
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 308, 508
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 499
BspACI CCGC 2 cut(s) 189, 282
BspANI GGCC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 500
BssSI CACGAG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 369
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 213, 256
BstDEI CTNAG 1 cut(s) 429
BstMAI GTCTC 2 cut(s) 308, 508
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 213, 256
CviAII CATG 4 cut(s) 19, 52, 304, 456
CviJI RGCY 9 cut(s) 56, 116, 152, 164, 179, 211, 238, 254, 268
CviKI_1 RGCY 9 cut(s) 56, 116, 152, 164, 179, 211, 238, 254, 268
DdeI CTNAG 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 114
FaeI CATG 4 cut(s) 22, 55, 307, 459
FatI CATG 4 cut(s) 18, 51, 303, 455
FauI CCCGC 1 cut(s) 196
FauNDI CATATG 1 cut(s) 406
FspBI CTAG 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 4 cut(s) 22, 55, 307, 459
HinfI GANTC 1 cut(s) 182
HphI GGTGA 2 cut(s) 177, 209
Hpy188I TCNGA 3 cut(s) 133, 229, 262
Hpy188III TCNNGA 4 cut(s) 155, 248, 298, 344
Hpy99I CGWCG 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 4 cut(s) 22, 55, 307, 459
LmnI GCTCC 5 cut(s) 74, 157, 169, 208, 502
LpnPI CCDG 3 cut(s) 80, 117, 513
LweI GCATC 2 cut(s) 90, 434
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 144
MboII GAAGA 5 cut(s) 5, 119, 120, 185, 367
MhlI GDGCHC 1 cut(s) 499
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 63, 78, 324
MluNI TGGCCA 1 cut(s) 116
MnlI CCTC 3 cut(s) 244, 283, 325
Mox20I TGGCCA 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 116
MseI TTAA 3 cut(s) 81, 308, 387
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 369
NdeI CATATG 1 cut(s) 406
NlaIII CATG 4 cut(s) 22, 55, 307, 459
NmeAIII GCCGAG 1 cut(s) 294
NspI RCATGY 1 cut(s) 307
NspV TTCGAA 1 cut(s) 171
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 182
PscI ACATGT 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 3 cut(s) 81, 308, 387
SduI GDGCHC 1 cut(s) 499
SetI ASST 8 cut(s) 147, 154, 166, 181, 213, 240, 294, 484
SfaNI GCATC 2 cut(s) 90, 434
SfcI CTRYAG 1 cut(s) 36
SfuI TTCGAA 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 239, 248
SmoI CTYRAG 2 cut(s) 239, 248
Sse9I AATT 3 cut(s) 63, 78, 324
SsiI CCGC 2 cut(s) 189, 282
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 377
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 147, 171
TasI AATT 3 cut(s) 63, 78, 324
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 3 cut(s) 81, 308, 387
Tru9I TTAA 3 cut(s) 81, 308, 387
TspDTI ATGAA 2 cut(s) 174, 477
TspGWI ACGGA 1 cut(s) 344
VspI ATTAAT 1 cut(s) 81
XceI RCATGY 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.