Rmu_sc0003178.1_g000007

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003178.1
OG0000474
Physical Location & Seq
Reverse (-)
13103 .. 14003
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003178.1_g000007.1.cds

Sequence Viewer

Length: 423 bp
atgaaggatgacgtcgaccttggagtgaagcagagtgatgatgacgccgatcttgggaagatgaaggctgacgtcagctcggaagatgacgaagcctacgctccagttacgatcgagtatgggtttccaccagagccgttccgtggatattatgacaatttagagcaatgtgaagacaacttcaacctaaattgtgttaaagagatttaccgcggtatgttcaaaatgaagcctcttaataagaactgttgtaagaaccttatgcagatgggatatggctatcacaataggttagtgaaatttgcgaacctgagaaataaagcaaaagcttccatggcattggctaagagtgtgcagatttggcaaaagtgtgtcttagttgttgaaactggtctattccctactgttcctgctcctttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

140

Amino Acids

15.92

Weight (kDa)

5.43

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 15, 75
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 211, 213
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 3 cut(s) 12, 45, 72
AfiI CCNNNNNNNGG 2 cut(s) 54, 143
AgsI TTSAA 3 cut(s) 184, 223, 386
AluBI AGCT 2 cut(s) 78, 329
AluI AGCT 2 cut(s) 78, 329
ApoI RAATTY 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 87
BsaHI GRCGYC 3 cut(s) 12, 45, 72
BsaJI CCNNGG 4 cut(s) 19, 142, 211, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 143
Bse1I ACTGG 2 cut(s) 104, 394
Bse3DI GCAATG 1 cut(s) 173
BseDI CCNNGG 4 cut(s) 19, 142, 211, 333
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 54, 143
BseMI GCAATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 104, 394
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 114
BsiEI CGRYCG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 54, 143
Bsp143I GATC 2 cut(s) 49, 111
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 2 cut(s) 211, 213
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 2 cut(s) 104, 394
BssECI CCNNGG 4 cut(s) 19, 142, 211, 333
BssMI GATC 2 cut(s) 49, 111
BssNI GRCGYC 3 cut(s) 12, 45, 72
BssT1I CCWWGG 2 cut(s) 19, 333
Bst4CI ACNGT 2 cut(s) 248, 406
BstACI GRCGYC 3 cut(s) 12, 45, 72
BstDEI CTNAG 3 cut(s) 311, 345, 376
BstDSI CCRYGG 3 cut(s) 142, 211, 333
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 2 cut(s) 52, 114
BstMBI GATC 2 cut(s) 49, 111
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 335, 361
BstUI CGCG 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 340
BtgI CCRYGG 3 cut(s) 142, 211, 333
BtsCI GGATG 1 cut(s) 13
Cfr42I CCGCGG 1 cut(s) 214
CseI GACGC 1 cut(s) 53
CviAII CATG 1 cut(s) 334
CviJI RGCY 8 cut(s) 68, 78, 95, 136, 232, 279, 329, 344
CviKI_1 RGCY 8 cut(s) 68, 78, 95, 136, 232, 279, 329, 344
DdeI CTNAG 3 cut(s) 311, 345, 376
DpnI GATC 2 cut(s) 51, 113
DpnII GATC 2 cut(s) 49, 111
Eco130I CCWWGG 2 cut(s) 19, 333
EcoT14I CCWWGG 2 cut(s) 19, 333
ErhI CCWWGG 2 cut(s) 19, 333
FaeI CATG 1 cut(s) 337
FaiI YATR 6 cut(s) 120, 153, 218, 263, 276, 335
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 1 cut(s) 333
FblI GTMKAC 1 cut(s) 15
FokI GGATG 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 87
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 3 cut(s) 12, 45, 72
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 248, 406
HpyCH4IV ACGT 2 cut(s) 12, 72
HpyCH4V TGCA 2 cut(s) 265, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 361
HpyF3I CTNAG 3 cut(s) 311, 345, 376
HpySE526I ACGT 2 cut(s) 12, 72
Hsp92I GRCGYC 3 cut(s) 12, 45, 72
Hsp92II CATG 1 cut(s) 337
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 2 cut(s) 49, 111
LmnI GCTCC 2 cut(s) 106, 418
LpnPI CCDG 4 cut(s) 117, 144, 323, 375
MaeII ACGT 2 cut(s) 12, 72
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 51, 113
MboI GATC 2 cut(s) 49, 111
MboII GAAGA 3 cut(s) 70, 95, 185
MluCI AATT 3 cut(s) 157, 190, 299
MnlI CCTC 1 cut(s) 243
MseI TTAA 2 cut(s) 198, 237
MspA1I CMGCKG 1 cut(s) 213
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 335, 361
NcoI CCATGG 1 cut(s) 333
NdeII GATC 2 cut(s) 49, 111
NlaIII CATG 1 cut(s) 337
Ple19I CGATCG 1 cut(s) 114
PvuI CGATCG 1 cut(s) 114
SacII CCGCGG 1 cut(s) 214
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 198, 237
Sau3AI GATC 2 cut(s) 49, 111
SetI ASST 9 cut(s) 15, 21, 75, 80, 189, 261, 293, 312, 331
Sfr303I CCGCGG 1 cut(s) 214
SgrBI CCGCGG 1 cut(s) 214
Sse9I AATT 3 cut(s) 157, 190, 299
SsiI CCGC 2 cut(s) 211, 213
StyI CCWWGG 2 cut(s) 19, 333
TaaI ACNGT 2 cut(s) 248, 406
TaiI ACGT 2 cut(s) 15, 75
TaqI TCGA 2 cut(s) 15, 114
TasI AATT 3 cut(s) 157, 190, 299
Tru1I TTAA 2 cut(s) 198, 237
Tru9I TTAA 2 cut(s) 198, 237
TspDTI ATGAA 3 cut(s) 17, 77, 242
TspGWI ACGGA 1 cut(s) 131
XapI RAATTY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 15
ZraI GACGTC 2 cut(s) 13, 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.