Rh5AG480400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000474
Physical Location & Seq
Forward (+)
82423233 .. 82429441
6209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG480400.1

Sequence Viewer

Length: 264 bp
ATGTCACAAAGCTACGCATTACTAAAACTACACAATTGGGTTCAATCGTGGCCCGCAGCTCAAGTTCCTGATTATGACTATCTACCCGATGAGTCCATTACCCCTGCTAGCTCTGAAGATGATGAAGCCTACGCTCCAGTTACGATCGAGTATGGGTTTCCACTAGAGCCGTTCTGTGGATATTATGACAATTTAGACCAATGTGAAGACAACTTCAACCTAAATTGTGTTAAAGAGATTTACCGCGTATATCACAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.18

Weight (kDa)

4.08

Isoelectric Point (pI)

65.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 54, 244
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 44, 217
AluBI AGCT 3 cut(s) 12, 59, 111
AluI AGCT 3 cut(s) 12, 59, 111
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 51
AsuNHI GCTAGC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 154
BfaI CTAG 2 cut(s) 108, 164
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 51
BmtI GCTAGC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 176
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 2 cut(s) 54, 244
BspANI GGCC 1 cut(s) 52
BspFNI CGCG 1 cut(s) 246
BspOI GCTAGC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 137
BssMI GATC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 54, 109
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMCI CGRYCG 1 cut(s) 147
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 54, 109
Cfr13I GGNCC 1 cut(s) 51
CviJI RGCY 6 cut(s) 12, 52, 59, 111, 128, 169
CviKI_1 RGCY 6 cut(s) 12, 52, 59, 111, 128, 169
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 135
FaiI YATR 4 cut(s) 75, 153, 186, 250
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 108, 164
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 52
HinfI GANTC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 68
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 3 cut(s) 81, 117, 150
Lsp1109I GCAGC 1 cut(s) 68
MaeI CTAG 2 cut(s) 108, 164
MaeIII GTNAC 2 cut(s) 3, 139
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 128, 218
MfeI CAATTG 1 cut(s) 34
MluCI AATT 4 cut(s) 34, 190, 223, 258
MlyI GAGTC 1 cut(s) 101
MseI TTAA 1 cut(s) 231
MunI CAATTG 1 cut(s) 34
MvnI CGCG 1 cut(s) 246
NdeII GATC 1 cut(s) 144
NheI GCTAGC 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 1 cut(s) 58
Ple19I CGATCG 1 cut(s) 147
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 51
PvuI CGATCG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 101
SetI ASST 4 cut(s) 14, 61, 113, 222
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 4 cut(s) 34, 190, 223, 258
SsiI CCGC 2 cut(s) 54, 244
SspMI CTAG 2 cut(s) 108, 164
TaqI TCGA 1 cut(s) 147
TasI AATT 4 cut(s) 34, 190, 223, 258
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 138
XapI RAATTY 1 cut(s) 258
XspI CTAG 2 cut(s) 108, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.