FvH4_3g40551

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000474
Physical Location & Seq
Forward (+)
34202371 .. 34203356
986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40551.t1

Sequence Viewer

Length: 537 bp
ATGGCTAGAGTTGATCAAAAATGTGTTTATCAACGTAGGTTTGCTGTTACCTTGATAGTTGACTATTTAGACGTTGATGATGCCTCCCCTCCAATTTCTTCAGAAGAAGGTGATGAATATGCGTTCCCTCCAAACCTATCACCGGAATCTTATGAGAAGTTGGATGAATGTGCAACTAAGATCAGAGAACACAACGCGGAAGAGATTTTGGCCGGAATTCTCCAAAGTGAGCCTCACACTACCAATAGTTGTGAAGTCCTTGTGCATTTGGGTTATGATTGTCACATCCGGATAGTGAAAACTCTGCTTTCACGTCCGGAACTAAAAGAAAAAGCTTCCGAGGCACTTCCTATGAGTGTGCAGATTCGGAAAAATGTAGCATTGCTCATGTCATCTGCAGCAGCTCAAGATCCTGATTATGACTATCTGCCCGACGAGTCCATTAGCCCTGCTAACTCTGAAGACGATGAAGCCTACGCCCCAGCAATGATCGAGTATGGATTTCCACTAGAGAATTTAGAGCGCAATGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

179

Amino Acids

19.98

Weight (kDa)

4.4

Isoelectric Point (pI)

70.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 197
AccIII TCCGGA 2 cut(s) 288, 316
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 216, 514
AcuI CTGAAG 2 cut(s) 84, 480
AfiI CCNNNNNNNGG 1 cut(s) 142
AjiI CACGTC 1 cut(s) 314
AluBI AGCT 2 cut(s) 335, 404
AluI AGCT 2 cut(s) 335, 404
AlwI GGATC 1 cut(s) 404
Aor13HI TCCGGA 2 cut(s) 288, 316
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 398, 401
ApoI RAATTY 2 cut(s) 216, 514
AspLEI GCGC 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 122, 132
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 410, 413
BclI TGATCA 1 cut(s) 13
BfaI CTAG 2 cut(s) 6, 509
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 2 cut(s) 399, 402
BlsI GCNGC 2 cut(s) 400, 403
BmgBI CACGTC 1 cut(s) 314
BmsI GCATC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 3 cut(s) 142, 288, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse3DI GCAATG 3 cut(s) 380, 492, 532
BseAI TCCGGA 2 cut(s) 288, 316
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 169, 285
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 3 cut(s) 380, 492, 532
BseXI GCAGC 2 cut(s) 410, 413
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 212
BsiSI CCGG 4 cut(s) 143, 213, 289, 317
BslI CCNNNNNNNGG 1 cut(s) 142
BsnI GGCC 1 cut(s) 212
Bsp13I TCCGGA 2 cut(s) 288, 316
Bsp143I GATC 4 cut(s) 13, 180, 409, 489
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 212
BspEI TCCGGA 2 cut(s) 288, 316
BspFNI CGCG 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 1 cut(s) 404
BsrDI GCAATG 3 cut(s) 380, 492, 532
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 4 cut(s) 13, 180, 409, 489
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 169, 285
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 4 cut(s) 16, 183, 412, 492
BstMBI GATC 4 cut(s) 13, 180, 409, 489
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 410, 413
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 212
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 169, 285
CfoI GCGC 1 cut(s) 525
CviAII CATG 1 cut(s) 388
CviJI RGCY 7 cut(s) 5, 212, 232, 335, 404, 447, 473
CviKI_1 RGCY 7 cut(s) 5, 212, 232, 335, 404, 447, 473
DdeI CTNAG 1 cut(s) 177
DpnI GATC 4 cut(s) 15, 182, 411, 491
DpnII GATC 4 cut(s) 13, 180, 409, 489
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 84, 480
EcoRI GAATTC 1 cut(s) 216
FaeI CATG 1 cut(s) 391
FaiI YATR 7 cut(s) 120, 153, 276, 353, 389, 420, 498
FatI CATG 1 cut(s) 387
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 399, 402
FokI GGATG 2 cut(s) 176, 272
Fsp4HI GCNGC 2 cut(s) 399, 402
FspBI CTAG 2 cut(s) 6, 509
GlaI GCGC 1 cut(s) 524
GluI GCNGC 2 cut(s) 399, 402
GsaI CCCAGC 1 cut(s) 485
HaeIII GGCC 1 cut(s) 212
HapII CCGG 4 cut(s) 143, 213, 289, 317
HhaI GCGC 1 cut(s) 525
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 3 cut(s) 146, 364, 437
HpaII CCGG 4 cut(s) 143, 213, 289, 317
HphI GGTGA 2 cut(s) 122, 132
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 5 cut(s) 103, 185, 340, 369, 460
Hpy188III TCNNGA 4 cut(s) 289, 317, 407, 413
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 3 cut(s) 34, 72, 313
HpyCH4V TGCA 4 cut(s) 173, 265, 361, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 3 cut(s) 34, 72, 313
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 1 cut(s) 523
Kpn2I TCCGGA 2 cut(s) 288, 316
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 180, 409, 489
LpnPI CCDG 7 cut(s) 156, 226, 302, 330, 426, 462, 495
Lsp1109I GCAGC 2 cut(s) 410, 413
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 6, 509
MaeII ACGT 3 cut(s) 34, 72, 313
MaeIII GTNAC 2 cut(s) 46, 281
MalI GATC 4 cut(s) 15, 182, 411, 491
MboI GATC 4 cut(s) 13, 180, 409, 489
MboII GAAGA 4 cut(s) 90, 116, 212, 473
MflI RGATCY 1 cut(s) 409
MluCI AATT 3 cut(s) 93, 216, 514
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 94, 99, 138, 243, 334
MroI TCCGGA 2 cut(s) 288, 316
MspI CCGG 4 cut(s) 143, 213, 289, 317
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 4 cut(s) 13, 180, 409, 489
NlaIII CATG 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 146, 364
PkrI GCNGC 2 cut(s) 400, 403
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 409
SatI GCNGC 2 cut(s) 399, 402
Sau3AI GATC 4 cut(s) 13, 180, 409, 489
SchI GAGTC 1 cut(s) 446
SetI ASST 9 cut(s) 37, 41, 53, 75, 112, 138, 316, 337, 406
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 3 cut(s) 93, 216, 514
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 6, 509
TaiI ACGT 3 cut(s) 37, 75, 316
TaqI TCGA 1 cut(s) 492
TasI AATT 3 cut(s) 93, 216, 514
TfiI GAWTC 2 cut(s) 146, 364
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 2 cut(s) 398, 401
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 129, 180, 483
XapI RAATTY 2 cut(s) 216, 514
XspI CTAG 2 cut(s) 6, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.