AT2G04037

Contains the following InterPro domains Protein of

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
1305560 .. 1306148
589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04037.1

Sequence Viewer

Length: 474 bp
ATGGCAAAGTCTATTCTCATGGCAATACTTGTATCTATATTAACGTTTAGCATGGTTTGTCTAATTTGCTCCCAGAAAATTCATCATTATTCAAAAGAAATATCAGAAGATGTAGACATATCTCCAACTTCAGTAGAAGGGGCTGACTCACCCACAACAGAATATGAGATAAAGCTTGCTCACCGTTTACATGAAGATTATATTCTGGCTTGTCCTAAAAAGCCGAGTTCCAAATGTGATGATGAGATTTTCCAGAACATGTTGGATGGTACGACACCAGTAACAAACGAATGTTGTCTTGATATACTGAAGACTGGCAAAGACTGTCATCTTGCATTGGTTAAAATTATATTCTCCACGGATGATTATAAAAATATTGCATCTAGAGCTATTCCAAAAAGTAAACAAACATGGAATGATTGTGCTCGTAGAGTGAGCAAAGAGATTGGTGCTCCGATCTCTTTCGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.54

Weight (kDa)

5.71

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 71 - 141 1.3e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AccI GTMKAC 1 cut(s) 114
AclI AACGTT 1 cut(s) 44
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 114, 329
AfaI GTAC 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 93
AluBI AGCT 2 cut(s) 175, 389
AluI AGCT 2 cut(s) 175, 389
Alw21I GWGCWC 2 cut(s) 427, 454
ApoI RAATTY 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 141, 173
AsuII TTCGAA 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 2 cut(s) 427, 454
BccI CCATC 1 cut(s) 260
BfaI CTAG 1 cut(s) 384
BmsI GCATC 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 357
Bse1I ACTGG 2 cut(s) 278, 319
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 271, 367
BseNI ACTGG 2 cut(s) 278, 319
BsiHKAI GWGCWC 2 cut(s) 427, 454
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 427, 454
Bsp143I GATC 1 cut(s) 456
BspT104I TTCGAA 1 cut(s) 465
BsrI ACTGG 2 cut(s) 278, 319
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 456
Bst4CI ACNGT 3 cut(s) 185, 326, 471
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 271, 367
BstKTI GATC 1 cut(s) 459
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 271, 367
Cac8I GCNNGC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 270
CviAII CATG 5 cut(s) 19, 52, 191, 259, 411
CviJI RGCY 5 cut(s) 143, 175, 209, 223, 389
CviKI_1 RGCY 5 cut(s) 143, 175, 209, 223, 389
CviQI GTAC 1 cut(s) 270
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
Eco57I CTGAAG 2 cut(s) 114, 329
FaeI CATG 5 cut(s) 22, 55, 194, 262, 414
FatI CATG 5 cut(s) 18, 51, 190, 258, 410
FblI GTMKAC 1 cut(s) 114
FokI GGATG 2 cut(s) 278, 374
FspBI CTAG 1 cut(s) 384
Hin1II CATG 5 cut(s) 22, 55, 194, 262, 414
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 146
HphI GGTGA 2 cut(s) 141, 173
Hpy166II GTNNAC 3 cut(s) 115, 188, 404
Hpy188I TCNGA 2 cut(s) 106, 456
Hpy188III TCNNGA 3 cut(s) 253, 299, 384
Hpy8I GTNNAC 3 cut(s) 115, 188, 404
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 185, 326, 471
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 335, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 5 cut(s) 22, 55, 194, 262, 414
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 2 cut(s) 74, 457
LpnPI CCDG 5 cut(s) 86, 191, 266, 291, 300
LweI GCATC 1 cut(s) 389
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 3 cut(s) 119, 206, 322
MhlI GDGCHC 2 cut(s) 427, 454
MluCI AATT 3 cut(s) 63, 78, 345
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 149, 243
MseI TTAA 2 cut(s) 41, 342
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 456
NlaIII CATG 5 cut(s) 22, 55, 194, 262, 414
NmeAIII GCCGAG 1 cut(s) 249
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 1 cut(s) 465
PciI ACATGT 1 cut(s) 258
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 44
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 41, 342
Sau3AI GATC 1 cut(s) 456
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 2 cut(s) 427, 454
SetI ASST 3 cut(s) 47, 177, 391
SfaNI GCATC 1 cut(s) 389
SfuI TTCGAA 1 cut(s) 465
Sse9I AATT 3 cut(s) 63, 78, 345
SspI AATATT 1 cut(s) 376
SspMI CTAG 1 cut(s) 384
TaaI ACNGT 3 cut(s) 185, 326, 471
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 465
TasI AATT 3 cut(s) 63, 78, 345
Tru1I TTAA 2 cut(s) 41, 342
Tru9I TTAA 2 cut(s) 41, 342
TspDTI ATGAA 2 cut(s) 71, 207
TspGWI ACGGA 1 cut(s) 374
XapI RAATTY 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.