AT1G52970

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000474
Physical Location & Seq
Reverse (-)
19736482 .. 19737083
602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52970.1

Sequence Viewer

Length: 450 bp
ATGGAGAAAGCAATTCTCATAACGTTTCTCATAGCCACCACATCGATGGTTTATCAAACTATTGGTCAAGAAGAAGAGATCAGTCCAATATCTCCTGAATCATTGGCATACGAACCCGCTGCAGCTTACGAGTACGACCACGAACTCCTAAGCCACATGACGACCCGGCGCATCAAATTTCTCCAAGATTGTTCGGATAAAATGAGCTCGAAATGCAATGTTGAGATGACGGAAGGATTGATCGACGACAAGCCCGTTTCGGAGGATTGTTGTGTGAACTTTTTGAAGATTGGAAGAGAATGTCACGAAGGATTGATGACTTTTGTGTTCGCCACTTATGAGCTAAAAGATGTTGCTTCTGCGATTCTTCCTAGGAGCAAACGGATGTGGAATAAATGTGTTGAGACCACTGCTGCTAAGATTGGTGCTCCTCTCGCTTTTGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0043680 GO:0044426 GO:0044462 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

149

Amino Acids

16.77

Weight (kDa)

4.89

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 63 - 134 3e-15 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AclI AACGTT 1 cut(s) 23
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 2 cut(s) 286, 443
AluBI AGCT 3 cut(s) 125, 207, 343
AluI AGCT 3 cut(s) 125, 207, 343
Alw21I GWGCWC 2 cut(s) 209, 430
Alw26I GTCTC 1 cut(s) 398
ApeKI GCWGC 3 cut(s) 119, 122, 413
ApoI RAATTY 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AspA2I CCTAGG 1 cut(s) 371
AspLEI GCGC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 166
AvrII CCTAGG 1 cut(s) 371
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 209, 430
BbvI GCAGC 3 cut(s) 106, 134, 400
BccI CCATC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 398
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 3 cut(s) 120, 123, 414
BlnI CCTAGG 1 cut(s) 371
BlsI GCNGC 3 cut(s) 121, 124, 415
Bme1390I CCNGG 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 223
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 3 cut(s) 106, 134, 400
BshVI ATCGAT 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 209, 430
BsiSI CCGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 209, 430
Bsp143I GATC 2 cut(s) 78, 240
BspACI CCGC 1 cut(s) 117
BspDI ATCGAT 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 2 cut(s) 78, 240
BssT1I CCWWGG 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 69, 289
BstDEI CTNAG 2 cut(s) 149, 417
BstF5I GGATG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 81, 243
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 2 cut(s) 78, 240
BstMWI GCNNNNNNNGC 2 cut(s) 213, 434
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 106, 134, 400
BstXI CCANNNNNNTGG 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 408
CfoI GCGC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 157
CviJI RGCY 6 cut(s) 35, 125, 153, 207, 253, 343
CviKI_1 RGCY 6 cut(s) 35, 125, 153, 207, 253, 343
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 149, 417
DpnI GATC 2 cut(s) 80, 242
DpnII GATC 2 cut(s) 78, 240
Eam1104I CTCTTC 2 cut(s) 69, 289
EarI CTCTTC 2 cut(s) 69, 289
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 1 cut(s) 160
FaiI YATR 5 cut(s) 20, 32, 109, 158, 339
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 120, 123, 414
FokI GGATG 1 cut(s) 397
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 120, 123, 414
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 170
GluI GCNGC 3 cut(s) 120, 123, 414
HapII CCGG 1 cut(s) 166
HhaI GCGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 98, 364
HpaII CCGG 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 196, 262
Hpy188III TCNNGA 3 cut(s) 68, 95, 305
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 227, 302
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 122, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 434
HpyF3I CTNAG 2 cut(s) 149, 417
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 78, 240
LmnI GCTCC 2 cut(s) 375, 433
LpnPI CCDG 2 cut(s) 108, 179
Lsp1109I GCAGC 3 cut(s) 106, 134, 400
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 80, 242
MboI GATC 2 cut(s) 78, 240
MboII GAAGA 5 cut(s) 83, 86, 298, 306, 359
MhlI GDGCHC 2 cut(s) 209, 430
MluCI AATT 2 cut(s) 12, 176
MnlI CCTC 2 cut(s) 256, 441
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 213, 434
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 78, 240
NlaIII CATG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 2 cut(s) 98, 364
PkrI GCNGC 3 cut(s) 121, 124, 415
Psp124BI GAGCTC 1 cut(s) 209
Psp1406I AACGTT 1 cut(s) 23
PstI CTGCAG 1 cut(s) 124
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 209
SatI GCNGC 3 cut(s) 120, 123, 414
Sau3AI GATC 2 cut(s) 78, 240
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 2 cut(s) 209, 430
SetI ASST 4 cut(s) 26, 127, 209, 345
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 2 cut(s) 12, 176
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 371
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 44, 209, 243
TasI AATT 2 cut(s) 12, 176
TfiI GAWTC 2 cut(s) 98, 364
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 3 cut(s) 119, 122, 413
Tsp45I GTSAC 1 cut(s) 302
TspGWI ACGGA 2 cut(s) 245, 397
TspRI CASTG 1 cut(s) 415
XapI RAATTY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmaJI CCTAGG 1 cut(s) 371
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.