AT2G04041

Contains the following InterPro domains Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000474
Physical Location & Seq
Reverse (-)
1307981 .. 1308544
564 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04041.1

Sequence Viewer

Length: 456 bp
ATGGCAAAGTCTTTTCTCATGGTAATGCTCGCATCCATGGTAATGTTTTACATGGCTTGTCCAATTTACTCCCAGAAAAATATATCAGAAGATATAGACATAGCTCCAACTTCAGTGGAAGGGGCTGATTTACCCACAACAGAGTATGAGATAGAGCTTGCTCACCGTTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGTGATGATGAGATTTTCAATAACATGATGGATGGGACGACACCAGTGACAAGTGAATGTTGTCGTGATATATTGAAGACTGGTAAAGATTGTCATCTTGCATTGGTTAAAATTGTATTCTCCACGGATGGGTATAAAAGTAAAGCATCCAGAGCAATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGATGGAGATTGGTGCCCCGGTCACTTTTGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

5.36

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 65 - 136 1.4e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 235, 292, 449
AluBI AGCT 2 cut(s) 104, 157
AluI AGCT 2 cut(s) 104, 157
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 436
BanI GGYRCC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 299
BccI CCATC 4 cut(s) 238, 242, 338, 415
BcnI CCSGG 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 437
BmsI GCATC 2 cut(s) 41, 371
BpiI GAAGAC 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 36, 339, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 2 cut(s) 260, 301
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 36, 339, 435
BseGI GGATG 5 cut(s) 32, 253, 349, 362, 426
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 260, 301
BseSI GKGCMC 1 cut(s) 436
BshNI GGYRCC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 436
Bsp19I CCATGG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 431
BsrI ACTGG 2 cut(s) 260, 301
BssECI CCNNGG 3 cut(s) 36, 339, 435
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 30, 159, 193
BstDSI CCRYGG 2 cut(s) 36, 339
BstF5I GGATG 5 cut(s) 32, 253, 349, 362, 426
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 299
BtgI CCRYGG 2 cut(s) 36, 339
BtsCI GGATG 5 cut(s) 32, 253, 349, 362, 426
BtsIMutI CAGTG 2 cut(s) 120, 267
Cac8I GCNNGC 3 cut(s) 30, 159, 193
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 6 cut(s) 19, 37, 52, 173, 241, 393
CviJI RGCY 6 cut(s) 56, 104, 125, 157, 191, 205
CviKI_1 RGCY 6 cut(s) 56, 104, 125, 157, 191, 205
Eco130I CCWWGG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 6 cut(s) 22, 40, 55, 176, 244, 396
FaqI GGGAC 1 cut(s) 265
FatI CATG 6 cut(s) 18, 36, 51, 172, 240, 392
FokI GGATG 5 cut(s) 19, 260, 349, 356, 433
HapII CCGG 1 cut(s) 437
Hin1II CATG 6 cut(s) 22, 40, 55, 176, 244, 396
HpaII CCGG 1 cut(s) 437
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 170, 386
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 281, 366
Hpy8I GTNNAC 2 cut(s) 170, 386
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
Hsp92II CATG 6 cut(s) 22, 40, 55, 176, 244, 396
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 86, 173, 273, 282, 379, 450
LweI GCATC 2 cut(s) 41, 371
MaeIII GTNAC 2 cut(s) 262, 439
MboII GAAGA 3 cut(s) 101, 188, 304
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 3 cut(s) 63, 327, 372
MmeI TCCRAC 1 cut(s) 131
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 23, 41
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 437
NcoI CCATGG 1 cut(s) 36
NlaIII CATG 6 cut(s) 22, 40, 55, 176, 244, 396
NlaIV GGNNCC 1 cut(s) 433
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 262, 439
PspN4I GGNNCC 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 23, 41
SaqAI TTAA 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 1 cut(s) 436
SetI ASST 2 cut(s) 106, 159
SfaNI GCATC 2 cut(s) 41, 371
SmiMI CAYNNNNRTG 2 cut(s) 23, 41
Sse9I AATT 3 cut(s) 63, 327, 372
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 167
TasI AATT 3 cut(s) 63, 327, 372
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 120, 267
TseFI GTSAC 2 cut(s) 262, 439
Tsp45I GTSAC 2 cut(s) 262, 439
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 2 cut(s) 356, 398
TspRI CASTG 2 cut(s) 120, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.