Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000474

Physical Location & Seq

Genomic Coordinates Reverse (-)

79507890 .. 79511937

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0597300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGATGCTTTGCGAAGCATTGCGTGATCGAATACAGGCATGGCTTCGTGACTACGACAGGCTTCAATATTTGGCCGTCATCCTCCTCTACATTCAGATTGCGTGCGCATTGCTAGGATCGCTGGGAGCATTGTACAACGGAGTGTTGCTGATCAATCTGGCGATTGCATTGTTCGCTCTGGTCGCAATCGAAAGTAGCAGTCAGAGCCTCGGCCGCACATACGCCGTCCTTCTCGTCTGCGCCATCTTCCTCGATATCTTCTGGATTCTTACTCCCGGCGATTATACAGCTCTCTATATCTTTTCAGTCAAACTCACTCTCGTTATGCAAATCATGGGCTTTTTTATCAGGTTTTCCTCCTCATTCCTGTGGATTCAGATCTACAGGTTGGGCCTTTCCTACGTAGTAGACCCTGCACCAACTCCTAGAGATGCAGATTTTGATTTACGAAATAGTTTCTTGAGTCCAACTACTCCCACGCCTGCTGTACTTAGACAAACCTCCGATTCTAGTGATGCCTTAGGAGGCTCTATCTATGATCCAGCTTATTACTCATCACTCTTCGAAGAGAGCCAGGGAAAATGTTTCGGTGGCAATGGATCTACATCTGCTGCTGAAGCTTGTAAGGTGAAACCATCTGTAGTCAGATCTTTTCAGTTCATAGATGAGGAGAAGACAGCAAGCCAGCATTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

232

Amino Acids

25.67

Weight (kDa)

4.96

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca	FvH4_3g40551
malus_domestica	MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis	pycom16g22710
rosa_chinensis	RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata	RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora	Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa	Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha	Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	3 cut(s)	124, 533, 607
AcoI	YGGCCR	2 cut(s)	72, 211
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	2 cut(s)	134, 489
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	3 cut(s)	290, 545, 620
AluI	AGCT	3 cut(s)	290, 545, 620
AlwI	GGATC	3 cut(s)	124, 533, 607
AoxI	GGCC	3 cut(s)	72, 211, 391
ApeKI	GCWGC	1 cut(s)	611
AspLEI	GCGC	2 cut(s)	107, 242
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	640
AsuII	TTCGAA	1 cut(s)	564
AxyI	CCTNAGG	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	2 cut(s)	251, 643
BceAI	ACGGC	2 cut(s)	59, 209
BciT130I	CCWGG	1 cut(s)	575
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	3 cut(s)	113, 426, 510
BfmI	CTRYAG	2 cut(s)	382, 639
BglII	AGATCT	2 cut(s)	378, 647
BisI	GCNGC	2 cut(s)	214, 612
BlsI	GCNGC	2 cut(s)	215, 613
Bme1390I	CCNGG	2 cut(s)	276, 575
BmgT120I	GGNCC	1 cut(s)	391
BmrFI	CCNGG	2 cut(s)	276, 575
BmsI	GCATC	2 cut(s)	421, 505
BpiI	GAAGAC	1 cut(s)	680
Bpu14I	TTCGAA	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	481
BpuMI	CCSGG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	403
BsaBI	GATNNNNATC	2 cut(s)	377, 604
BsaJI	CCNNGG	2 cut(s)	208, 574
Bse21I	CCTNAGG	1 cut(s)	520
Bse3DI	GCAATG	3 cut(s)	17, 107, 601
Bse8I	GATNNNNATC	2 cut(s)	377, 604
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	208, 574
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	2 cut(s)	377, 604
BseMI	GCAATG	3 cut(s)	17, 107, 601
BseRI	GAGGAG	3 cut(s)	74, 349, 683
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	598
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	74, 213, 393
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	74, 213, 393
Bsp119I	TTCGAA	1 cut(s)	564
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	3 cut(s)	74, 213, 393
BspPI	GGATC	3 cut(s)	124, 533, 607
BspT104I	TTCGAA	1 cut(s)	564
BsrDI	GCAATG	3 cut(s)	17, 107, 601
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	208, 574
BssMI	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
Bst2UI	CCWGG	1 cut(s)	575
Bst6I	CTCTTC	2 cut(s)	561, 566
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	564
BstC8I	GCNNGC	4 cut(s)	103, 483, 682, 686
BstDEI	CTNAG	2 cut(s)	491, 520
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	107, 242
BstKTI	GATC	7 cut(s)	28, 119, 153, 381, 541, 602, 650
BstMBI	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 173, 182, 204, 213, 617
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	274, 573
BstSFI	CTRYAG	2 cut(s)	382, 639
BstSNI	TACGTA	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	3 cut(s)	378, 599, 647
BstYI	RGATCY	3 cut(s)	378, 599, 647
BstZI	CGGCCG	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	74, 213, 393
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	4 cut(s)	103, 483, 682, 686
CfoI	GCGC	2 cut(s)	107, 242
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	133, 488
CviAII	CATG	2 cut(s)	39, 334
CviQI	GTAC	2 cut(s)	133, 488
DdeI	CTNAG	2 cut(s)	491, 520
DpnI	GATC	7 cut(s)	27, 118, 152, 380, 540, 601, 649
DpnII	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
EaeI	YGGCCR	2 cut(s)	72, 211
EagI	CGGCCG	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	561, 566
EarI	CTCTTC	2 cut(s)	561, 566
EclXI	CGGCCG	1 cut(s)	211
Eco105I	TACGTA	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	636
Eco81I	CCTNAGG	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	256
FaeI	CATG	2 cut(s)	42, 337
FaiI	YATR	8 cut(s)	40, 220, 285, 297, 326, 335, 537, 662
FatI	CATG	2 cut(s)	38, 333
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	214, 612
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	214, 612
FspAI	RTGCGCAY	1 cut(s)	106
FspBI	CTAG	3 cut(s)	113, 426, 510
FspI	TGCGCA	1 cut(s)	106
GlaI	GCGC	2 cut(s)	106, 241
GluI	GCNGC	2 cut(s)	214, 612
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	74, 213, 393
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	2 cut(s)	107, 242
Hin1II	CATG	2 cut(s)	42, 337
Hin6I	GCGC	2 cut(s)	105, 240
HinP1I	GCGC	2 cut(s)	105, 240
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	4 cut(s)	265, 373, 463, 506
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	5 cut(s)	96, 204, 378, 505, 647
Hpy188III	TCNNGA	3 cut(s)	47, 262, 460
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	167, 328, 416, 434
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 173, 182, 204, 213, 617
HpyF3I	CTNAG	2 cut(s)	491, 520
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	42, 337
HspAI	GCGC	2 cut(s)	105, 240
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	2 cut(s)	421, 505
MaeI	CTAG	3 cut(s)	113, 426, 510
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	7 cut(s)	27, 118, 152, 380, 540, 601, 649
MboI	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
MboII	GAAGA	5 cut(s)	238, 250, 553, 578, 685
MflI	RGATCY	3 cut(s)	378, 599, 647
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	9 cut(s)	92, 95, 218, 260, 367, 370, 511, 518, 661
MseI	TTAA	1 cut(s)	697
MslI	CAYNNNNRTG	1 cut(s)	367
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	276, 575
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	6 cut(s)	118, 173, 182, 204, 213, 617
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
NlaIII	CATG	2 cut(s)	42, 337
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	47
NsbI	TGCGCA	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	564
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	265, 373, 506
PkrI	GCNGC	2 cut(s)	215, 613
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Ppu21I	YACGTR	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	3 cut(s)	378, 599, 647
RsaI	GTAC	2 cut(s)	134, 489
RsaNI	GTAC	2 cut(s)	133, 488
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	697
SatI	GCNGC	2 cut(s)	214, 612
Sau3AI	GATC	7 cut(s)	25, 116, 150, 378, 538, 599, 647
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	276, 575
SetI	ASST	8 cut(s)	292, 353, 389, 405, 503, 547, 622, 630
SfaNI	GCATC	2 cut(s)	421, 505
SfcI	CTRYAG	2 cut(s)	382, 639
SfuI	TTCGAA	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
SnaBI	TACGTA	1 cut(s)	403
SsiI	CCGC	1 cut(s)	214
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	3 cut(s)	113, 426, 510
StyD4I	CCNGG	2 cut(s)	274, 573
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	4 cut(s)	28, 189, 252, 564
TatI	WGTACW	2 cut(s)	132, 487
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	265, 373, 506
Tru1I	TTAA	1 cut(s)	697
Tru9I	TTAA	1 cut(s)	697
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	649
TspGWI	ACGGA	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	3 cut(s)	113, 426, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.