AT5G35405

Contains the following InterPro domains Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000474
Physical Location & Seq
Reverse (-)
13604162 .. 13604744
583 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35405.1

Sequence Viewer

Length: 450 bp
ATGGCAAAATCTCTTCTCATGGTCATGCTTGTATCCATTGTAATGTTTTACATGGCTTGTCCAATTTTATCCCAGGAGGTACATGAAGATGTAGTCATATCTCCAACTCCATTCGAAAAAGCTATTTCACCCGCAATGGAATATGAAATGAAGCTTCCCCATTACTCGCAAAAACAGTATGATTTTCTAGAGGCTTGCGTTGAAAAGCCGAGCTCCATATGCGGAGGTGAGATTTTCCAGAACGTGTTGGATGAAACAAACCTAGTGACAGATAAATGTTGTCGTAATATATTGAAGATTGGCAAAGATTGCCATCTTGGATTGATGAAAATCTTATTCTCATCGTATGAATATAAAAATATTGCATCTATTCCAAGAAGCAAACAGACATGGAACGATTGTCTTCGTAGAGTTGGAAGCAAGATTGGTGTTCCAGTCTCTTTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

6.3

Isoelectric Point (pI)

66.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 66 - 134 6.1e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 132, 222
AfaI GTAC 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 3 cut(s) 203, 295, 446
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 3 cut(s) 122, 154, 213
AluI AGCT 3 cut(s) 122, 154, 213
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 120, 239
AsuII TTCGAA 1 cut(s) 114
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 215
BccI CCATC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 2 cut(s) 188, 263
BfuI GTATCC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 395
Bpu14I TTCGAA 1 cut(s) 114
BsaBI GATNNNNATC 2 cut(s) 312, 329
BsaJI CCNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 141
Bse8I GATNNNNATC 2 cut(s) 312, 329
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 2 cut(s) 312, 329
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 215
BspACI CCGC 2 cut(s) 132, 222
BspT104I TTCGAA 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 434
BssECI CCNNGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 309
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 442
BstMWI GCNNNNNNNGC 2 cut(s) 219, 309
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 395
BsuI GTATCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 80
CviAII CATG 5 cut(s) 19, 25, 52, 83, 390
CviJI RGCY 6 cut(s) 56, 122, 154, 194, 208, 213
CviKI_1 RGCY 6 cut(s) 56, 122, 154, 194, 208, 213
CviQI GTAC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 215
FaeI CATG 5 cut(s) 22, 28, 55, 86, 393
FatI CATG 5 cut(s) 18, 24, 51, 82, 389
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 218
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 215
FspBI CTAG 2 cut(s) 188, 263
Hin1II CATG 5 cut(s) 22, 28, 55, 86, 393
HindIII AAGCTT 1 cut(s) 152
HphI GGTGA 2 cut(s) 120, 239
Hpy188III TCNNGA 2 cut(s) 188, 238
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 309
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 5 cut(s) 22, 28, 55, 86, 393
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 3 cut(s) 59, 86, 251
LweI GCATC 1 cut(s) 374
MaeI CTAG 2 cut(s) 188, 263
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 265
MboII GAAGA 4 cut(s) 5, 98, 307, 395
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 1 cut(s) 63
MmeI TCCRAC 3 cut(s) 128, 228, 394
MnlI CCTC 3 cut(s) 70, 184, 218
MslI CAYNNNNRTG 3 cut(s) 23, 41, 87
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 219, 309
NdeI CATATG 1 cut(s) 218
NlaIII CATG 5 cut(s) 22, 28, 55, 86, 393
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 265
NspV TTCGAA 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 3 cut(s) 23, 41, 87
SacI GAGCTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 215
SetI ASST 7 cut(s) 81, 124, 156, 215, 229, 246, 264
SfaNI GCATC 1 cut(s) 374
SfuI TTCGAA 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 23, 41, 87
Sse9I AATT 1 cut(s) 63
SsiI CCGC 2 cut(s) 132, 222
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 188, 263
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 63
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 6 cut(s) 99, 159, 164, 267, 341, 363
XbaI TCTAGA 1 cut(s) 187
XspI CTAG 2 cut(s) 188, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.